FvH4_2g36100

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000508
Physical Location & Seq
Forward (+)
26497701 .. 26500457
2757 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36100.t1

Sequence Viewer

Length: 1125 bp
ATGGCCTCACTCATCGCCTCAGCTCCATGGAAGTACGACGTCTTCTTGAGCAGCTCAAGCCAGGACGCAGGCAACTTTTCATATCTTCTACACAAGGCTTTGAAGGATGAAGGAATTCTCACTCTCAGAGACAGCCAAGAGGTTGAGGGAGCAGAAAGCACAGCTTCCCTGGAGGTCGGAATCAGACAATCGAAGGTGGCCATAGTTATTATCTCGCCGGACTATGCTTCCTCCCCTCGGCTCTTGGAACAACTTGTGCAATTTCTTGAAGCAAACAGGGACTCAAGTAGTCTCATCTTCCCAGGCTTTCACCTTGTCGACCCCTCAGATGTCCGAAAACAAAAAGGAACTATTGGAGCAAGCTTCGCCAAGCATGAACAAGAACAAGACTCTGACAAGGTTAAACGTTGGAGGGCTGCTTTGACATCCGTGGCAAGTTTAACTGGATGGCATACTGAATCTCATAAGGATCAAACAGCGCTTATCAATGATATCGTGCAATCTTTACAACGATGCATCTTCAGGAAGGAAACGGAGAATATTATTGAGCAATCTGTAGACGAGGTCAGCACCAATACCAGTGTTGAGGAGAAGATTATTGAGCAACCAGTAGACGAGGTCAGCAGGAATACCAGTGTCAAGGACAAGATCATCACCGTTAAGCATGAGGAGCAAAAGGCCACAGTGGATGCTACTTCATCAGCAGAATGGAACTTCTTACTCTTTACCCTCATCCTCGAGATTCTTTCTGCTGGTTTCGATCAAGCTTCTTTGCCAAGCAAACCGCACTATGCATTAATTGCAATGCTGCTTGCTGCTGCAGCTGTATTCAATTGCATTTGGGAGCTGATTCAAAAGAAAAACCTAGTACTGAAGAGCTGGAAAAAACTACACTGTATATCTTATCCACATCTTTCGGACACTTACTTCGAAAGTCACTTAGACACATATGGATTAGCCAGTAGCATCTATCAATGCGTTTTCTCCACAGTTCAGTATATTTACTTCTTTTACAATGCTAATAGTCCTATCAGATTATGCGCCTTACCTGCCGTCTATCTCATGTGTTTGGCTGGTTCAAGACTATGGAAGAAGTACCATAAGAGTAAACCACTACCTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

375

Amino Acids

41.99

Weight (kDa)

6.14

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 182 5.4e-34 TIR domain
TIR_2 PF13676 14 - 102 1.8e-07 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 1057
AccI GTMKAC 3 cut(s) 318, 558, 612
AciI CCGC 1 cut(s) 785
AclI AACGTT 1 cut(s) 406
AclWI GGATC 1 cut(s) 477
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 1 cut(s) 114
AcuI CTGAAG 2 cut(s) 505, 893
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 3 cut(s) 35, 870, 1097
AfeI AGCGCT 1 cut(s) 480
AfiI CCNNNNNNNGG 1 cut(s) 237
AgsI TTSAA 5 cut(s) 103, 269, 832, 854, 1080
AjnI CCWGG 3 cut(s) 60, 168, 301
AluBI AGCT 8 cut(s) 23, 54, 164, 363, 767, 824, 847, 879
AluI AGCT 8 cut(s) 23, 54, 164, 363, 767, 824, 847, 879
Alw26I GTCTC 2 cut(s) 123, 296
AlwI GGATC 1 cut(s) 477
Ama87I CYCGRG 1 cut(s) 737
Aor51HI AGCGCT 1 cut(s) 480
AoxI GGCC 3 cut(s) 3, 198, 678
ApeKI GCWGC 6 cut(s) 51, 416, 808, 815, 818, 821
ApoI RAATTY 1 cut(s) 114
ArsI GACNNNNNNTTYG 2 cut(s) 911, 943
AseI ATTAAT 1 cut(s) 797
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 2 cut(s) 481, 1043
AsuHPI GGTGA 2 cut(s) 302, 646
AsuII TTCGAA 1 cut(s) 930
AvaI CYCGRG 1 cut(s) 737
BalI TGGCCA 1 cut(s) 200
BarI GAAGNNNNNNTAC 4 cut(s) 26, 58, 989, 1021
BbsI GAAGAC 1 cut(s) 34
BbvCI CCTCAGC 1 cut(s) 19
BbvI GCAGC 6 cut(s) 63, 403, 795, 802, 805, 833
BccI CCATC 1 cut(s) 441
BceAI ACGGC 1 cut(s) 1037
BciT130I CCWGG 3 cut(s) 62, 170, 303
BcoDI GTCTC 2 cut(s) 123, 296
BfaI CTAG 2 cut(s) 866, 1123
BfmI CTRYAG 2 cut(s) 555, 819
BfoI RGCGCY 1 cut(s) 482
BfuAI ACCTGC 1 cut(s) 1057
BisI GCNGC 6 cut(s) 52, 417, 809, 816, 819, 822
BlsI GCNGC 6 cut(s) 53, 418, 810, 817, 820, 823
BmcAI AGTACT 1 cut(s) 870
Bme1390I CCNGG 3 cut(s) 62, 170, 303
BmeT110I CYCGRG 1 cut(s) 737
BmrFI CCNGG 3 cut(s) 62, 170, 303
BmsI GCATC 4 cut(s) 503, 525, 679, 975
BpiI GAAGAC 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 19
Bpu14I TTCGAA 1 cut(s) 930
BpuEI CTTGAG 3 cut(s) 40, 67, 268
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 5 cut(s) 26, 168, 236, 301, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 237
Bse1I ACTGG 5 cut(s) 448, 579, 608, 633, 960
Bse3DI GCAATG 1 cut(s) 810
BseBI CCWGG 3 cut(s) 62, 170, 303
BseDI CCNNGG 5 cut(s) 26, 168, 236, 301, 429
BseGI GGATG 5 cut(s) 112, 425, 452, 694, 732
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMI GCAATG 1 cut(s) 810
BseMII CTCAG 3 cut(s) 33, 139, 339
BseNI ACTGG 5 cut(s) 448, 579, 608, 633, 960
BseRI GAGGAG 2 cut(s) 602, 683
BseXI GCAGC 6 cut(s) 63, 403, 795, 802, 805, 833
BshFI GGCC 3 cut(s) 5, 200, 680
BsiHKCI CYCGRG 1 cut(s) 737
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 237
BsmAI GTCTC 2 cut(s) 123, 296
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 3 cut(s) 5, 200, 680
BsoBI CYCGRG 1 cut(s) 737
Bsp119I TTCGAA 1 cut(s) 930
Bsp143I GATC 3 cut(s) 469, 648, 760
Bsp19I CCATGG 1 cut(s) 26
BspACI CCGC 1 cut(s) 785
BspANI GGCC 3 cut(s) 5, 200, 680
BspCNI CTCAG 3 cut(s) 32, 138, 338
BspMAI CTGCAG 1 cut(s) 823
BspMI ACCTGC 1 cut(s) 1057
BspPI GGATC 1 cut(s) 477
BspQI GCTCTTC 1 cut(s) 869
BspT104I TTCGAA 1 cut(s) 930
BsrDI GCAATG 1 cut(s) 810
BsrI ACTGG 5 cut(s) 448, 579, 608, 633, 960
BssECI CCNNGG 5 cut(s) 26, 168, 236, 301, 429
BssMI GATC 3 cut(s) 469, 648, 760
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 26
Bst2UI CCWGG 3 cut(s) 62, 170, 303
Bst4CI ACNGT 4 cut(s) 658, 685, 896, 991
Bst6I CTCTTC 1 cut(s) 869
BstACI GRCGYC 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 800
BstBI TTCGAA 1 cut(s) 930
BstC8I GCNNGC 3 cut(s) 70, 361, 813
BstDEI CTNAG 4 cut(s) 19, 125, 325, 940
BstDSI CCRYGG 2 cut(s) 26, 429
BstF5I GGATG 5 cut(s) 112, 425, 452, 694, 732
BstH2I RGCGCY 1 cut(s) 482
BstHHI GCGC 2 cut(s) 481, 1043
BstKTI GATC 3 cut(s) 472, 651, 763
BstMAI GTCTC 2 cut(s) 123, 296
BstMBI GATC 3 cut(s) 469, 648, 760
BstMWI GCNNNNNNNGC 6 cut(s) 57, 365, 670, 800, 821, 1049
BstNI CCWGG 3 cut(s) 62, 170, 303
BstSCI CCNGG 3 cut(s) 60, 168, 301
BstSFI CTRYAG 2 cut(s) 555, 819
BstV1I GCAGC 6 cut(s) 63, 403, 795, 802, 805, 833
BstV2I GAAGAC 1 cut(s) 34
BsuRI GGCC 3 cut(s) 5, 200, 680
BtgI CCRYGG 2 cut(s) 26, 429
BtsCI GGATG 5 cut(s) 112, 425, 452, 694, 732
BtsIMutI CAGTG 4 cut(s) 586, 640, 690, 892
BveI ACCTGC 1 cut(s) 1057
Cac8I GCNNGC 3 cut(s) 70, 361, 813
CfoI GCGC 2 cut(s) 481, 1043
CseI GACGC 1 cut(s) 74
Csp6I GTAC 3 cut(s) 34, 869, 1096
CviAII CATG 4 cut(s) 27, 374, 665, 1063
CviQI GTAC 3 cut(s) 34, 869, 1096
DdeI CTNAG 4 cut(s) 19, 125, 325, 940
DpnI GATC 3 cut(s) 471, 650, 762
DpnII GATC 3 cut(s) 469, 648, 760
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 869
EarI CTCTTC 1 cut(s) 869
Eco130I CCWWGG 1 cut(s) 26
Eco32I GATATC 1 cut(s) 493
Eco47III AGCGCT 1 cut(s) 480
Eco57I CTGAAG 2 cut(s) 505, 893
Eco88I CYCGRG 1 cut(s) 737
EcoRI GAATTC 1 cut(s) 114
EcoRII CCWGG 3 cut(s) 60, 168, 301
EcoRV GATATC 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 26
EcoT22I ATGCAT 2 cut(s) 518, 796
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 4 cut(s) 30, 377, 668, 1066
FalI AAGNNNNNCTT 2 cut(s) 148, 180
FaqI GGGAC 1 cut(s) 293
FatI CATG 4 cut(s) 26, 373, 664, 1062
FauNDI CATATG 1 cut(s) 949
FblI GTMKAC 3 cut(s) 318, 558, 612
Fnu4HI GCNGC 6 cut(s) 52, 417, 809, 816, 819, 822
FokI GGATG 5 cut(s) 119, 412, 459, 701, 719
Fsp4HI GCNGC 6 cut(s) 52, 417, 809, 816, 819, 822
FspBI CTAG 2 cut(s) 866, 1123
GlaI GCGC 2 cut(s) 480, 1042
GluI GCNGC 6 cut(s) 52, 417, 809, 816, 819, 822
GsuI CTGGAG 1 cut(s) 191
HaeII RGCGCY 1 cut(s) 482
HaeIII GGCC 3 cut(s) 5, 200, 680
HapII CCGG 1 cut(s) 218
HgaI GACGC 1 cut(s) 74
HhaI GCGC 2 cut(s) 481, 1043
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 4 cut(s) 30, 377, 668, 1066
Hin6I GCGC 2 cut(s) 479, 1041
HinP1I GCGC 2 cut(s) 479, 1041
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 2 cut(s) 361, 765
HinfI GANTC 6 cut(s) 180, 281, 389, 458, 742, 850
HpaII CCGG 1 cut(s) 218
HphI GGTGA 2 cut(s) 302, 646
Hpy166II GTNNAC 4 cut(s) 319, 559, 613, 1109
Hpy188I TCNGA 8 cut(s) 128, 179, 185, 328, 335, 394, 919, 1034
Hpy188III TCNNGA 5 cut(s) 46, 266, 523, 739, 1080
Hpy8I GTNNAC 4 cut(s) 319, 559, 613, 1109
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 4 cut(s) 97, 104, 187, 520
HpyCH4III ACNGT 4 cut(s) 658, 685, 896, 991
HpyCH4IV ACGT 2 cut(s) 39, 406
HpyCH4V TGCA 7 cut(s) 259, 499, 516, 794, 803, 821, 837
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 365, 670, 800, 821, 1049
HpyF3I CTNAG 4 cut(s) 19, 125, 325, 940
HpySE526I ACGT 2 cut(s) 39, 406
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 4 cut(s) 30, 377, 668, 1066
HspAI GCGC 2 cut(s) 479, 1041
Kzo9I GATC 3 cut(s) 469, 648, 760
LguI GCTCTTC 1 cut(s) 869
LmnI GCTCC 5 cut(s) 28, 149, 356, 670, 844
Lsp1109I GCAGC 6 cut(s) 63, 403, 795, 802, 805, 833
LweI GCATC 4 cut(s) 503, 525, 679, 975
MaeI CTAG 2 cut(s) 866, 1123
MaeII ACGT 2 cut(s) 39, 406
MaeIII GTNAC 1 cut(s) 935
MalI GATC 3 cut(s) 471, 650, 762
MboI GATC 3 cut(s) 469, 648, 760
MboII GAAGA 7 cut(s) 34, 77, 289, 511, 604, 886, 1102
MfeI CAATTG 1 cut(s) 832
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 4 cut(s) 114, 260, 798, 832
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 2 cut(s) 275, 383
MmeI TCCRAC 2 cut(s) 157, 389
Mox20I TGGCCA 1 cut(s) 200
Mph1103I ATGCAT 2 cut(s) 518, 796
MroXI GAANNNNTTC 1 cut(s) 114
MscI TGGCCA 1 cut(s) 200
MseI TTAA 4 cut(s) 402, 440, 660, 797
Msp20I TGGCCA 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 824
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 3 cut(s) 62, 170, 303
MunI CAATTG 1 cut(s) 832
MvaI CCWGG 3 cut(s) 62, 170, 303
MwoI GCNNNNNNNGC 6 cut(s) 57, 365, 670, 800, 821, 1049
NcoI CCATGG 1 cut(s) 26
NdeI CATATG 1 cut(s) 949
NdeII GATC 3 cut(s) 469, 648, 760
NlaIII CATG 4 cut(s) 30, 377, 668, 1066
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 935
NsiI ATGCAT 2 cut(s) 518, 796
NspV TTCGAA 1 cut(s) 930
PaeR7I CTCGAG 1 cut(s) 737
PciSI GCTCTTC 1 cut(s) 869
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 4 cut(s) 180, 458, 742, 850
PflFI GACNNNGTC 2 cut(s) 563, 617
PkrI GCNGC 6 cut(s) 53, 418, 810, 817, 820, 823
PleI GAGTC 2 cut(s) 275, 383
PpsI GAGTC 2 cut(s) 275, 383
PshBI ATTAAT 1 cut(s) 797
Psp1406I AACGTT 1 cut(s) 406
Psp6I CCWGG 3 cut(s) 60, 168, 301
PspGI CCWGG 3 cut(s) 60, 168, 301
PstI CTGCAG 1 cut(s) 823
PsyI GACNNNGTC 2 cut(s) 563, 617
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 3 cut(s) 35, 870, 1097
RsaNI GTAC 3 cut(s) 34, 869, 1096
SalI GTCGAC 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 869
SaqAI TTAA 4 cut(s) 402, 440, 660, 797
SatI GCNGC 6 cut(s) 52, 417, 809, 816, 819, 822
Sau3AI GATC 3 cut(s) 469, 648, 760
ScaI AGTACT 1 cut(s) 870
SchI GAGTC 2 cut(s) 275, 383
ScrFI CCNGG 3 cut(s) 62, 170, 303
SfaNI GCATC 4 cut(s) 503, 525, 679, 975
SfcI CTRYAG 2 cut(s) 555, 819
Sfr274I CTCGAG 1 cut(s) 737
SfuI TTCGAA 1 cut(s) 930
SlaI CTCGAG 1 cut(s) 737
SmlI CTYRAG 4 cut(s) 46, 55, 283, 737
SmoI CTYRAG 4 cut(s) 46, 55, 283, 737
Sse9I AATT 4 cut(s) 114, 260, 798, 832
SsiI CCGC 1 cut(s) 785
SspI AATATT 1 cut(s) 541
SspMI CTAG 2 cut(s) 866, 1123
StyD4I CCNGG 3 cut(s) 60, 168, 301
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 4 cut(s) 658, 685, 896, 991
TaiI ACGT 2 cut(s) 42, 409
TaqI TCGA 5 cut(s) 191, 318, 738, 759, 930
TasI AATT 4 cut(s) 114, 260, 798, 832
TatI WGTACW 1 cut(s) 868
TfiI GAWTC 4 cut(s) 180, 458, 742, 850
Tru1I TTAA 4 cut(s) 402, 440, 660, 797
Tru9I TTAA 4 cut(s) 402, 440, 660, 797
TscAI CASTG 4 cut(s) 586, 640, 690, 899
TseFI GTSAC 1 cut(s) 935
TseI GCWGC 6 cut(s) 51, 416, 808, 815, 818, 821
Tsp45I GTSAC 1 cut(s) 935
TspDTI ATGAA 4 cut(s) 69, 123, 390, 687
TspGWI ACGGA 2 cut(s) 418, 548
TspRI CASTG 4 cut(s) 586, 640, 690, 899
Tth111I GACNNNGTC 2 cut(s) 563, 617
VspI ATTAAT 1 cut(s) 797
XapI RAATTY 1 cut(s) 114
XhoI CTCGAG 1 cut(s) 737
XmiI GTMKAC 3 cut(s) 318, 558, 612
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 2 cut(s) 866, 1123
ZraI GACGTC 1 cut(s) 40
ZrmI AGTACT 1 cut(s) 870
Zsp2I ATGCAT 2 cut(s) 518, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.