pycom15g05370

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000508
Physical Location & Seq
Forward (+)
3202706 .. 3202996
291 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g05370.1

Sequence Viewer

Length: 291 bp
ATGATATTGGCTATTGCAGCTCTACTCATTTGCATCTGGGAGCTCGTTTACAAGGGTAAAAAGGAAGGAGTTGTATTGCGGCGGTGGGGAAAGTACTTGTGGTGGTTTTATTATCCGCATTCCACCCAGCTTTTTGGAACTCTTCCAGATTTTTATGGATTAATTGGTAGCACTTTGCAGTGTTTTTGCTCGACGATTCAATATGTTTGGTTCTCTCATCATGCTGACAATCCCATCAAAGTTTCCCTTTGGCCTGCAATATTTCTTGTATGCTGGGTGCCAAAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.24

Weight (kDa)

8.98

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 277
AciI CCGC 3 cut(s) 79, 82, 116
AfaI GTAC 1 cut(s) 95
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 3 cut(s) 20, 43, 130
AluI AGCT 3 cut(s) 20, 43, 130
Alw21I GWGCWC 1 cut(s) 45
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 17
AseI ATTAAT 1 cut(s) 161
BanI GGYRCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 29
BccI CCATC 1 cut(s) 242
BisI GCNGC 2 cut(s) 18, 80
BlsI GCNGC 2 cut(s) 19, 81
BmcAI AGTACT 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 1 cut(s) 42
BseXI GCAGC 1 cut(s) 29
BseYI CCCAGC 2 cut(s) 126, 273
BshFI GGCC 1 cut(s) 253
BshNI GGYRCC 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 45
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 45
BspACI CCGC 3 cut(s) 79, 82, 116
BspANI GGCC 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 255
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 29
BstXI CCANNNNNNTGG 1 cut(s) 134
BsuRI GGCC 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 94
CviAII CATG 1 cut(s) 221
CviJI RGCY 5 cut(s) 11, 20, 43, 130, 253
CviKI_1 RGCY 5 cut(s) 11, 20, 43, 130, 253
CviQI GTAC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 1 cut(s) 224
FaiI YATR 4 cut(s) 156, 204, 222, 271
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FatI CATG 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 18, 80
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 18, 80
GluI GCNGC 2 cut(s) 18, 80
GsaI CCCAGC 2 cut(s) 130, 277
HaeIII GGCC 1 cut(s) 253
Hin1II CATG 1 cut(s) 224
HinfI GANTC 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 17, 33, 178, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 224
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 5 cut(s) 22, 140, 159, 259, 267
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 42
MboII GAAGA 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 162
MseI TTAA 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 17
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 279
PctI GAATGC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 19, 81
PshBI ATTAAT 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 45
PspFI CCCAGC 2 cut(s) 126, 273
PspN4I GGNNCC 1 cut(s) 279
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 2 cut(s) 18, 80
ScaI AGTACT 1 cut(s) 95
SduI GDGCHC 1 cut(s) 45
SetI ASST 4 cut(s) 22, 45, 132, 289
SfaNI GCATC 1 cut(s) 42
Sse9I AATT 1 cut(s) 162
SsiI CCGC 3 cut(s) 79, 82, 116
SspI AATATT 1 cut(s) 261
SstI GAGCTC 1 cut(s) 45
TaqI TCGA 1 cut(s) 191
TasI AATT 1 cut(s) 162
TatI WGTACW 1 cut(s) 93
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 1 cut(s) 185
TseI GCWGC 1 cut(s) 17
TspRI CASTG 1 cut(s) 185
VspI ATTAAT 1 cut(s) 161
ZrmI AGTACT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.