Rh6DG184600

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000508
Physical Location & Seq
Reverse (-)
32970399 .. 32970789
391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG184600.1

Sequence Viewer

Length: 333 bp
ATGCTATTAGCAATTGCAGCTCTACTCACTTGCATATGTGAGCTCATTCACAAGGGTATAAAGGAAAGAGTTGTGCTGAGGCGTTGTGGAATGTTATGGTGGTTTCATTATCCCCGTTCCCGTTACGTACTTCTTGGTACCCTTCCCAATTGTTTCGGATTAGTTGGTGGCATCTTTCAGTGCATTTGCTCGACGATTCAGTATGTTTACTACATTCGGTATGGTAAAGATCCGATCAAAGTTTCCCTTTTGCCTGCCATCTTTCTTATATGTCTGGCTATTTCAAGATTGAATTGGACTTGTAGGGATGAGACCATTGAACAAAATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

110

Amino Acids

12.73

Weight (kDa)

8.86

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 137
AclWI GGATC 1 cut(s) 224
AfaI GTAC 2 cut(s) 129, 139
AgsI TTSAA 3 cut(s) 285, 292, 320
AluBI AGCT 2 cut(s) 20, 43
AluI AGCT 2 cut(s) 20, 43
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 17
Asp718I GGTACC 1 cut(s) 137
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 29
BccI CCATC 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 305
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 139
BmsI GCATC 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 77
BsaAI YACGTR 1 cut(s) 127
BsaI GGTCTC 1 cut(s) 305
BseGI GGATG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 305
Bso31I GGTCTC 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 229, 234
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 139
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 137
BspTNI GGTCTC 1 cut(s) 305
BssMI GATC 2 cut(s) 229, 234
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 2 cut(s) 232, 237
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 2 cut(s) 229, 234
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstSNI TACGTA 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 255
Csp6I GTAC 2 cut(s) 128, 138
CviJI RGCY 3 cut(s) 20, 43, 278
CviKI_1 RGCY 3 cut(s) 20, 43, 278
CviQI GTAC 2 cut(s) 128, 138
DdeI CTNAG 1 cut(s) 77
DpnI GATC 2 cut(s) 231, 236
DpnII GATC 2 cut(s) 229, 234
Ecl136II GAGCTC 1 cut(s) 43
Eco105I TACGTA 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 305
Eco53kI GAGCTC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 45
FaiI YATR 8 cut(s) 35, 37, 59, 97, 204, 222, 269, 271
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FauNDI CATATG 1 cut(s) 35
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 18
HinfI GANTC 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 158, 234
Hpy188III TCNNGA 1 cut(s) 285
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 17, 33, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 126
KpnI GGTACC 1 cut(s) 141
Kzo9I GATC 2 cut(s) 229, 234
LpnPI CCDG 2 cut(s) 260, 267
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 180
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 122
MalI GATC 2 cut(s) 231, 236
MboI GATC 2 cut(s) 229, 234
MfeI CAATTG 2 cut(s) 12, 148
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 3 cut(s) 12, 148, 292
MnlI CCTC 1 cut(s) 72
MseI TTAA 1 cut(s) 331
MunI CAATTG 2 cut(s) 12, 148
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeI CATATG 1 cut(s) 35
NdeII GATC 2 cut(s) 229, 234
NlaIV GGNNCC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 139
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 2 cut(s) 129, 139
RsaNI GTAC 2 cut(s) 128, 138
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 331
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 2 cut(s) 229, 234
SduI GDGCHC 1 cut(s) 45
SetI ASST 3 cut(s) 22, 45, 129
SfaNI GCATC 1 cut(s) 180
SnaBI TACGTA 1 cut(s) 127
Sse9I AATT 3 cut(s) 12, 148, 292
SstI GAGCTC 1 cut(s) 45
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 191
TasI AATT 3 cut(s) 12, 148, 292
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TscAI CASTG 1 cut(s) 185
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.