MD15G1057200.v1.1

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000508
Physical Location & Seq
Forward (+)
3833976 .. 3836567
2592 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1057200.v1.1.491

Sequence Viewer

Length: 1206 bp
ATGGGCATCACAGAAACAGTTATGGCGAAATCCATGAGCTTTGAAAGAAAAGAAGGAAGAGACCATTCAGAAACTAATAGCAGCTCCAATGGCTCTGATAAAGTTTACATAGAAAGGTCAACAAACTTCAAAAATTGGGTATCCACAGAACCGAAAATTGAAGCATCTGATTCAATATTTGAGAGTCCTGATTTAACCTCTTCGATCGGTAGAAATGGTGAAGTAGTGGAGATAAACAAGCCTACAATTTTGTTTCTTGAGCGCAATGCGGCGGCAACTAAGATTCAGAAAGTTTACAGGACGTACAGGACTACACGTACCAATGCTGCGGCAACTAGGATTCAGAAGGTTTATAAGCGTTACAGGACTAGACGAAACTTTGCAGATTGCGCTGTTGTAGTTGAGGAACTATGGTTGAAGGCCTTAGACCTCGGAGCTCGGAAACGAAGCTCAGAGGCCTTGGACATTGAGAAACACGAAACTATTGAGTCACTGCGGGCACGAACTAGGGCAAGGGCTTCTGGCCAGGCTGACAAACTAGAGCTGCAGCACTGGCTTGAATCTATTGATCCACGCCATCGGTACGGGCACAATTTAGAGTTCTACTACGATGTCTGGTGTGATTGCGACAGCAAGCAACCTTTCTTCTACTGGTTGGATATTGGTGATGGTAAAAACATAAATCTCAGTAAGTGTCCGAGGACCGAGCTACAACGTCAGTGCATCAGCAATCTTGGACAACGCCAGAACAGCAGATATCTTGTACCAACTATTTCAGTAGAATGGACATTTCTAGTCATTGGCCTCTGCCTAGAGATTTTGTCGATTGCTTTTGATCAGGCCGCCTCCCCAAGTAAGCCCCGATATGCACTATTTGGTATGACATTGGCTATTGCAGTTCTACTCATTTGCATATGGGAGCTCATTTACAAGGGTAAAAAGGAAGGAGTTGTGTTGCGGCGGTGGGGAAAGTTGTGGTGGTTTTATTATCCACATTCCGCCCAGATTTTTGGAACTCTTCCTGACTTTTATGGATTACTTGGTAGCACTTCGCAGTGTATATGCTCGACGGTTCAATATGTTTGCTTCTCTCATCATGCTGACAATCCCATCAAAGTATCCCTTTGGCCTGCCATCTTTCTTGTATGCTTGGGTGCAAAAAAATTAGTCGAGAAACGAAATGAGACCCATGGACACAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

402

Amino Acids

46.09

Weight (kDa)

9.04

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AciI CCGC 8 cut(s) 269, 272, 329, 496, 843, 958, 961, 999
AclWI GGATC 1 cut(s) 563
AcoI YGGCCR 1 cut(s) 523
AfaI GTAC 4 cut(s) 305, 319, 584, 765
AflIII ACRYGT 1 cut(s) 314
AgsI TTSAA 7 cut(s) 44, 130, 161, 174, 418, 560, 1076
AjnI CCWGG 1 cut(s) 525
AluBI AGCT 7 cut(s) 39, 84, 437, 450, 544, 709, 922
AluI AGCT 7 cut(s) 39, 84, 437, 450, 544, 709, 922
Alw21I GWGCWC 2 cut(s) 439, 924
Alw26I GTCTC 2 cut(s) 54, 1178
AlwI GGATC 1 cut(s) 563
AoxI GGCC 6 cut(s) 420, 456, 523, 802, 840, 1127
ApeKI GCWGC 4 cut(s) 81, 326, 544, 547
AspLEI GCGC 2 cut(s) 264, 392
AspS9I GGNCC 1 cut(s) 702
AsuHPI GGTGA 2 cut(s) 230, 677
AvaII GGWCC 1 cut(s) 702
BaeGI GKGCMC 2 cut(s) 502, 591
BalI TGGCCA 1 cut(s) 525
BanII GRGCYC 2 cut(s) 439, 924
Bbv12I GWGCWC 2 cut(s) 439, 924
BbvI GCAGC 4 cut(s) 93, 313, 531, 559
BccI CCATC 4 cut(s) 585, 662, 1118, 1142
BciT130I CCWGG 1 cut(s) 527
BciVI GTATCC 2 cut(s) 151, 1129
BclI TGATCA 1 cut(s) 835
BcoDI GTCTC 2 cut(s) 54, 1178
BfaI CTAG 6 cut(s) 336, 369, 507, 539, 794, 812
BfmI CTRYAG 1 cut(s) 545
BfuI GTATCC 2 cut(s) 151, 1129
BisI GCNGC 9 cut(s) 82, 270, 273, 327, 330, 545, 548, 843, 959
BlsI GCNGC 9 cut(s) 83, 271, 274, 328, 331, 546, 549, 844, 960
Bme1390I CCNGG 1 cut(s) 527
Bme18I GGWCC 1 cut(s) 702
BmgT120I GGNCC 1 cut(s) 702
BmrFI CCNGG 1 cut(s) 527
BmsI GCATC 3 cut(s) 15, 173, 732
BpuEI CTTGAG 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 317
BsaI GGTCTC 2 cut(s) 54, 1178
BsaJI CCNNGG 4 cut(s) 430, 459, 698, 1189
Bse1I ACTGG 2 cut(s) 557, 656
Bse3DI GCAATG 1 cut(s) 271
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 4 cut(s) 430, 459, 698, 1189
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 465, 700
BseNI ACTGG 2 cut(s) 557, 656
BseSI GKGCMC 2 cut(s) 502, 591
BseXI GCAGC 4 cut(s) 93, 313, 531, 559
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 6 cut(s) 422, 458, 525, 804, 842, 1129
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 439, 924
BsmAI GTCTC 2 cut(s) 54, 1178
BsnI GGCC 6 cut(s) 422, 458, 525, 804, 842, 1129
Bso31I GGTCTC 2 cut(s) 54, 1178
Bsp1286I GDGCHC 4 cut(s) 439, 502, 591, 924
Bsp143I GATC 3 cut(s) 204, 568, 835
Bsp19I CCATGG 1 cut(s) 1189
BspACI CCGC 8 cut(s) 269, 272, 329, 496, 843, 958, 961, 999
BspANI GGCC 6 cut(s) 422, 458, 525, 804, 842, 1129
BspCNI CTCAG 2 cut(s) 464, 699
BspMAI CTGCAG 1 cut(s) 549
BspPI GGATC 1 cut(s) 563
BspTNI GGTCTC 2 cut(s) 54, 1178
BsrDI GCAATG 1 cut(s) 271
BsrI ACTGG 2 cut(s) 557, 656
BssECI CCNNGG 4 cut(s) 430, 459, 698, 1189
BssMI GATC 3 cut(s) 204, 568, 835
BssT1I CCWWGG 2 cut(s) 459, 1189
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 2 cut(s) 19, 1072
Bst6I CTCTTC 3 cut(s) 52, 205, 1023
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 3 cut(s) 498, 635, 1131
BstDEI CTNAG 4 cut(s) 279, 424, 451, 686
BstDSI CCRYGG 1 cut(s) 1189
BstHHI GCGC 2 cut(s) 264, 392
BstKTI GATC 3 cut(s) 207, 571, 838
BstMAI GTCTC 2 cut(s) 54, 1178
BstMBI GATC 3 cut(s) 204, 568, 835
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 4 cut(s) 90, 389, 553, 750
BstNI CCWGG 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 525
BstSFI CTRYAG 1 cut(s) 545
BstSLI GKGCMC 2 cut(s) 502, 591
BstV1I GCAGC 4 cut(s) 93, 313, 531, 559
BstXI CCANNNNNNTGG 1 cut(s) 1010
BsuI GTATCC 2 cut(s) 151, 1129
BsuRI GGCC 6 cut(s) 422, 458, 525, 804, 842, 1129
BtgI CCRYGG 1 cut(s) 1189
BtsI GCAGTG 2 cut(s) 491, 1061
BtsIMutI CAGTG 4 cut(s) 491, 550, 725, 1061
Cac8I GCNNGC 3 cut(s) 498, 635, 1131
CfoI GCGC 2 cut(s) 264, 392
Cfr13I GGNCC 1 cut(s) 702
Csp6I GTAC 4 cut(s) 304, 318, 583, 764
CviAII CATG 3 cut(s) 34, 1097, 1190
CviQI GTAC 4 cut(s) 304, 318, 583, 764
DdeI CTNAG 4 cut(s) 279, 424, 451, 686
DpnI GATC 3 cut(s) 206, 570, 837
DpnII GATC 3 cut(s) 204, 568, 835
EaeI YGGCCR 1 cut(s) 523
Eam1104I CTCTTC 3 cut(s) 52, 205, 1023
EarI CTCTTC 3 cut(s) 52, 205, 1023
EciI GGCGGA 1 cut(s) 988
Ecl136II GAGCTC 2 cut(s) 437, 922
Eco130I CCWWGG 2 cut(s) 459, 1189
Eco147I AGGCCT 2 cut(s) 422, 458
Eco24I GRGCYC 2 cut(s) 439, 924
Eco31I GGTCTC 2 cut(s) 54, 1178
Eco32I GATATC 1 cut(s) 758
Eco47I GGWCC 1 cut(s) 702
Eco53kI GAGCTC 2 cut(s) 437, 922
EcoICRI GAGCTC 2 cut(s) 437, 922
EcoRII CCWGG 1 cut(s) 525
EcoRV GATATC 1 cut(s) 758
EcoT14I CCWWGG 2 cut(s) 459, 1189
EcoT38I GRGCYC 2 cut(s) 439, 924
ErhI CCWWGG 2 cut(s) 459, 1189
FaeI CATG 3 cut(s) 37, 1100, 1193
FalI AAGNNNNNCTT 2 cut(s) 1107, 1139
FatI CATG 3 cut(s) 33, 1096, 1189
FauI CCCGC 1 cut(s) 489
FauNDI CATATG 1 cut(s) 914
FbaI TGATCA 1 cut(s) 835
Fnu4HI GCNGC 9 cut(s) 82, 270, 273, 327, 330, 545, 548, 843, 959
FriOI GRGCYC 2 cut(s) 439, 924
Fsp4HI GCNGC 9 cut(s) 82, 270, 273, 327, 330, 545, 548, 843, 959
FspBI CTAG 6 cut(s) 336, 369, 507, 539, 794, 812
GlaI GCGC 2 cut(s) 263, 391
GluI GCNGC 9 cut(s) 82, 270, 273, 327, 330, 545, 548, 843, 959
HaeIII GGCC 6 cut(s) 422, 458, 525, 804, 842, 1129
HhaI GCGC 2 cut(s) 264, 392
Hin1II CATG 3 cut(s) 37, 1100, 1193
Hin6I GCGC 2 cut(s) 262, 390
HinP1I GCGC 2 cut(s) 262, 390
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 6 cut(s) 170, 184, 283, 340, 488, 560
HphI GGTGA 2 cut(s) 230, 677
Hpy166II GTNNAC 3 cut(s) 106, 120, 295
Hpy188I TCNGA 9 cut(s) 70, 97, 169, 288, 345, 434, 441, 454, 699
Hpy188III TCNNGA 4 cut(s) 188, 257, 1022, 1171
Hpy8I GTNNAC 3 cut(s) 106, 120, 295
Hpy99I CGWCG 1 cut(s) 1072
HpyAV CCTTC 4 cut(s) 47, 340, 412, 938
HpyCH4III ACNGT 2 cut(s) 19, 1072
HpyCH4IV ACGT 3 cut(s) 302, 316, 715
HpyCH4V TGCA 7 cut(s) 383, 547, 723, 869, 896, 912, 1157
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 389, 553, 750
HpyF3I CTNAG 4 cut(s) 279, 424, 451, 686
HpySE526I ACGT 3 cut(s) 302, 316, 715
Hsp92II CATG 3 cut(s) 37, 1100, 1193
HspAI GCGC 2 cut(s) 262, 390
Ksp22I TGATCA 1 cut(s) 835
Kzo9I GATC 3 cut(s) 204, 568, 835
LmnI GCTCC 3 cut(s) 89, 434, 919
Lsp1109I GCAGC 4 cut(s) 93, 313, 531, 559
LweI GCATC 3 cut(s) 15, 173, 732
MaeI CTAG 6 cut(s) 336, 369, 507, 539, 794, 812
MaeII ACGT 3 cut(s) 302, 316, 715
MaeIII GTNAC 2 cut(s) 359, 489
MalI GATC 3 cut(s) 206, 570, 837
MboI GATC 3 cut(s) 204, 568, 835
MboII GAAGA 4 cut(s) 69, 192, 637, 1010
MhlI GDGCHC 4 cut(s) 439, 502, 591, 924
MlsI TGGCCA 1 cut(s) 525
MluCI AATT 5 cut(s) 133, 156, 246, 592, 1163
MluNI TGGCCA 1 cut(s) 525
MlyI GAGTC 2 cut(s) 193, 497
MmeI TCCRAC 1 cut(s) 636
MnlI CCTC 7 cut(s) 208, 397, 440, 448, 693, 815, 856
Mox20I TGGCCA 1 cut(s) 525
MscI TGGCCA 1 cut(s) 525
MseI TTAA 1 cut(s) 194
Msp20I TGGCCA 1 cut(s) 525
MspR9I CCNGG 1 cut(s) 527
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 4 cut(s) 90, 389, 553, 750
NcoI CCATGG 1 cut(s) 1189
NdeI CATATG 1 cut(s) 914
NdeII GATC 3 cut(s) 204, 568, 835
NlaIII CATG 3 cut(s) 37, 1100, 1193
NmuCI GTSAC 1 cut(s) 489
PceI AGGCCT 2 cut(s) 422, 458
PfeI GAWTC 4 cut(s) 170, 283, 340, 560
PkrI GCNGC 9 cut(s) 83, 271, 274, 328, 331, 546, 549, 844, 960
Ple19I CGATCG 1 cut(s) 207
PleI GAGTC 2 cut(s) 192, 496
PpsI GAGTC 2 cut(s) 192, 496
Ppu21I YACGTR 1 cut(s) 317
PsiI TTATAA 1 cut(s) 354
Psp124BI GAGCTC 2 cut(s) 439, 924
Psp6I CCWGG 1 cut(s) 525
PspGI CCWGG 1 cut(s) 525
PspPI GGNCC 1 cut(s) 702
PstI CTGCAG 1 cut(s) 549
PvuI CGATCG 1 cut(s) 207
RsaI GTAC 4 cut(s) 305, 319, 584, 765
RsaNI GTAC 4 cut(s) 304, 318, 583, 764
SacI GAGCTC 2 cut(s) 439, 924
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 9 cut(s) 82, 270, 273, 327, 330, 545, 548, 843, 959
Sau3AI GATC 3 cut(s) 204, 568, 835
Sau96I GGNCC 1 cut(s) 702
SchI GAGTC 2 cut(s) 193, 497
ScrFI CCNGG 1 cut(s) 527
SduI GDGCHC 4 cut(s) 439, 502, 591, 924
SfaNI GCATC 3 cut(s) 15, 173, 732
SfcI CTRYAG 1 cut(s) 545
SinI GGWCC 1 cut(s) 702
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 5 cut(s) 133, 156, 246, 592, 1163
SseBI AGGCCT 2 cut(s) 422, 458
SsiI CCGC 8 cut(s) 269, 272, 329, 496, 843, 958, 961, 999
SspI AATATT 1 cut(s) 177
SspMI CTAG 6 cut(s) 336, 369, 507, 539, 794, 812
SstI GAGCTC 2 cut(s) 439, 924
StuI AGGCCT 2 cut(s) 422, 458
StyD4I CCNGG 1 cut(s) 525
StyI CCWWGG 2 cut(s) 459, 1189
TaaI ACNGT 2 cut(s) 19, 1072
TaiI ACGT 3 cut(s) 305, 319, 718
TaqI TCGA 4 cut(s) 203, 824, 1067, 1170
TaqII GACCGA 1 cut(s) 719
TasI AATT 5 cut(s) 133, 156, 246, 592, 1163
TauI GCSGC 5 cut(s) 272, 275, 332, 845, 961
TfiI GAWTC 4 cut(s) 170, 283, 340, 560
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 4 cut(s) 498, 557, 725, 1061
TseFI GTSAC 1 cut(s) 489
TseI GCWGC 4 cut(s) 81, 326, 544, 547
Tsp45I GTSAC 1 cut(s) 489
TspRI CASTG 4 cut(s) 498, 557, 725, 1061
VpaK11BI GGWCC 1 cut(s) 702
XspI CTAG 6 cut(s) 336, 369, 507, 539, 794, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.