RchiOBHm_Chr6g0276281

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000508
Physical Location & Seq
Reverse (-)
38283443 .. 38284855
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24785

Sequence Viewer

Length: 405 bp
ATGAAAGATAGGAACAGGATTCTGGCAATATTTCATGATGTTAATCTATTCCATGTCCAAAAACAAAGAGGGACTTTTGAGAAAGCATTTGACGAGCATGAAGAAAGGTTTCAGGATGATTTGGAAAAGGTTCAAGCCTGGAGAGATGCTTTGACCAATGTGTGCAATTTTGCTGGATGGACTTCCAATGATAGGAATGAAGTACAGGTTATAGAAGAAATTACTGAAGCACTGTGGAACAAACTACATTCTAGACTCAGTCCAATGGAAAAACAGCATCCAACATCCACACACAACTTGGTCGCATTCACTAGCATTAGTGTTGTCTACCGTGATCATAACCATCCAATACACATTACATATATGACGGCTACTTCAGTAGAGTGGAACTTTTTTTATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

134

Amino Acids

16.0

Weight (kDa)

6.03

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 4 - 87 6.3e-13 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 327
AcuI CTGAAG 2 cut(s) 246, 360
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 1 cut(s) 134
AjnI CCWGG 1 cut(s) 137
Asp700I GAANNNNTTC 2 cut(s) 108, 129
BccI CCATC 2 cut(s) 171, 351
BceAI ACGGC 1 cut(s) 384
BciT130I CCWGG 1 cut(s) 139
BclI TGATCA 1 cut(s) 334
BfaI CTAG 2 cut(s) 252, 312
Bme1390I CCNGG 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 139
BmsI GCATC 2 cut(s) 136, 286
BpmI CTGGAG 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 42
BseBI CCWGG 1 cut(s) 139
BseGI GGATG 5 cut(s) 121, 182, 277, 284, 343
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 85
BsmI GAATGC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 334
BspCNI CTCAG 1 cut(s) 270
BspHI TCATGA 1 cut(s) 34
BssMI GATC 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 2 cut(s) 234, 332
BstDEI CTNAG 1 cut(s) 257
BstF5I GGATG 5 cut(s) 121, 182, 277, 284, 343
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 137
BtsCI GGATG 5 cut(s) 121, 182, 277, 284, 343
BtsIMutI CAGTG 1 cut(s) 230
CciI TCATGA 1 cut(s) 34
Csp6I GTAC 1 cut(s) 203
CviAII CATG 3 cut(s) 35, 53, 98
CviJI RGCY 2 cut(s) 137, 371
CviKI_1 RGCY 2 cut(s) 137, 371
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 1 cut(s) 257
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eco57I CTGAAG 2 cut(s) 246, 360
EcoRII CCWGG 1 cut(s) 137
FaeI CATG 3 cut(s) 38, 56, 101
FaiI YATR 8 cut(s) 36, 54, 99, 212, 339, 361, 363, 365
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FaqI GGGAC 1 cut(s) 85
FatI CATG 3 cut(s) 34, 52, 97
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 1 cut(s) 327
FokI GGATG 5 cut(s) 128, 189, 264, 271, 330
FspBI CTAG 2 cut(s) 252, 312
GsuI CTGGAG 1 cut(s) 160
Hin1II CATG 3 cut(s) 38, 56, 101
HinfI GANTC 2 cut(s) 19, 255
Hpy166II GTNNAC 1 cut(s) 328
Hpy188III TCNNGA 3 cut(s) 35, 113, 252
Hpy8I GTNNAC 1 cut(s) 328
HpyCH4III ACNGT 2 cut(s) 234, 332
HpyCH4V TGCA 1 cut(s) 165
HpyF3I CTNAG 1 cut(s) 257
Hsp92II CATG 3 cut(s) 38, 56, 101
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 1 cut(s) 334
LpnPI CCDG 6 cut(s) 8, 98, 124, 151, 159, 191
LweI GCATC 2 cut(s) 136, 286
MaeI CTAG 2 cut(s) 252, 312
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 2 cut(s) 113, 227
MluCI AATT 2 cut(s) 166, 219
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 1 cut(s) 62
MroXI GAANNNNTTC 2 cut(s) 108, 129
MseI TTAA 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 139
Mva1269I GAATGC 1 cut(s) 305
MvaI CCWGG 1 cut(s) 139
NdeII GATC 1 cut(s) 334
NlaIII CATG 3 cut(s) 38, 56, 101
PagI TCATGA 1 cut(s) 34
PctI GAATGC 1 cut(s) 305
PdmI GAANNNNTTC 2 cut(s) 108, 129
PfeI GAWTC 1 cut(s) 19
PflFI GACNNNGTC 1 cut(s) 258
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PsyI GACNNNGTC 1 cut(s) 258
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 1 cut(s) 334
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 1 cut(s) 139
SetI ASST 3 cut(s) 110, 132, 210
SfaNI GCATC 2 cut(s) 136, 286
Sse9I AATT 2 cut(s) 166, 219
SspI AATATT 1 cut(s) 30
SspMI CTAG 2 cut(s) 252, 312
StyD4I CCNGG 1 cut(s) 137
TaaI ACNGT 2 cut(s) 234, 332
TasI AATT 2 cut(s) 166, 219
TatI WGTACW 1 cut(s) 202
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 1 cut(s) 237
TspDTI ATGAA 4 cut(s) 17, 23, 114, 213
TspRI CASTG 1 cut(s) 237
Tth111I GACNNNGTC 1 cut(s) 258
XbaI TCTAGA 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 327
XmnI GAANNNNTTC 2 cut(s) 108, 129
XspI CTAG 2 cut(s) 252, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.