Rh6DG207700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
36900023 .. 36918446
18424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG207700.1

Sequence Viewer

Length: 360 bp
ATGCCGAGATTGGGAAGATCGGCGGAGTCGTTCTCGTTCAGGTCACAGGTTGAACTCCATGAAGAAGGCAAAGAAGCTCTGGTCCGAGCTACCTCGCCAGAGGCGAACTCGGGCCTTGATGCAAAGGAAGAAGTCGCATTCACTAGCGTTAATGTTAATGAGGACTACCGTGACCATAACCATCCAATACACATTACAGATATGACGGTCGCATTCACTAGCATTAGTGTTGTCTACCGTGATCATAACCATCCAATACACATTACATATATGACGGGCACTACCAAATCCAACAAGCTAAAAGGCTTTAGGTTTATCAAATCCACATTCAAACTTCCTAGTAGACATATTCAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.61

Weight (kDa)

8.1

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 234, 343
AciI CCGC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 11
AgsI TTSAA 3 cut(s) 53, 331, 353
AluBI AGCT 3 cut(s) 77, 89, 298
AluI AGCT 3 cut(s) 77, 89, 298
Ama87I CYCGRG 1 cut(s) 109
AoxI GGCC 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 82, 112
AvaI CYCGRG 1 cut(s) 109
AvaII GGWCC 1 cut(s) 82
BaeGI GKGCMC 1 cut(s) 281
BccI CCATC 2 cut(s) 189, 258
BclI TGATCA 1 cut(s) 241
BfaI CTAG 3 cut(s) 144, 219, 339
Bme18I GGWCC 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 2 cut(s) 82, 112
BmsI GCATC 1 cut(s) 109
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 92, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 11
BseGI GGATG 2 cut(s) 181, 250
BseLI CCNNNNNNNGG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 281
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 114
BsiEI CGRYCG 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 11
BsmI GAATGC 2 cut(s) 137, 212
BsnI GGCC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 17, 241
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 114
BssMI GATC 2 cut(s) 17, 241
Bst4CI ACNGT 3 cut(s) 170, 208, 239
BstF5I GGATG 2 cut(s) 181, 250
BstKTI GATC 2 cut(s) 20, 244
BstMBI GATC 2 cut(s) 17, 241
BstMCI CGRYCG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 281
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 2 cut(s) 181, 250
Cfr13I GGNCC 2 cut(s) 82, 112
CviAII CATG 1 cut(s) 59
CviJI RGCY 5 cut(s) 77, 89, 114, 298, 306
CviKI_1 RGCY 5 cut(s) 77, 89, 114, 298, 306
DpnI GATC 2 cut(s) 19, 243
DpnII GATC 2 cut(s) 17, 241
EciI GGCGGA 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 109
FaeI CATG 1 cut(s) 62
FaiI YATR 8 cut(s) 60, 177, 203, 246, 268, 270, 272, 348
FatI CATG 1 cut(s) 58
FbaI TGATCA 1 cut(s) 241
FblI GTMKAC 2 cut(s) 234, 343
FokI GGATG 2 cut(s) 168, 237
FspBI CTAG 3 cut(s) 144, 219, 339
HaeIII GGCC 1 cut(s) 114
Hin1II CATG 1 cut(s) 62
HinfI GANTC 1 cut(s) 26
Hpy166II GTNNAC 2 cut(s) 235, 344
Hpy188I TCNGA 1 cut(s) 86
Hpy8I GTNNAC 2 cut(s) 235, 344
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 3 cut(s) 170, 208, 239
HpyCH4V TGCA 1 cut(s) 122
Hsp92II CATG 1 cut(s) 62
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 2 cut(s) 17, 241
LpnPI CCDG 4 cut(s) 25, 32, 65, 111
LweI GCATC 1 cut(s) 109
MaeI CTAG 3 cut(s) 144, 219, 339
MaeIII GTNAC 2 cut(s) 42, 170
MalI GATC 2 cut(s) 19, 243
MboI GATC 2 cut(s) 17, 241
MboII GAAGA 3 cut(s) 27, 74, 140
MhlI GDGCHC 1 cut(s) 281
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 3 cut(s) 94, 103, 154
MseI TTAA 2 cut(s) 150, 156
Mva1269I GAATGC 2 cut(s) 137, 212
NdeII GATC 2 cut(s) 17, 241
NlaIII CATG 1 cut(s) 62
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 2 cut(s) 42, 170
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 101
PctI GAATGC 2 cut(s) 137, 212
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PspPI GGNCC 2 cut(s) 82, 112
SaqAI TTAA 2 cut(s) 150, 156
Sau3AI GATC 2 cut(s) 17, 241
Sau96I GGNCC 2 cut(s) 82, 112
SchI GAGTC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 281
SetI ASST 7 cut(s) 44, 51, 79, 91, 95, 300, 314
SfaNI GCATC 1 cut(s) 109
SinI GGWCC 1 cut(s) 82
SsiI CCGC 1 cut(s) 23
SspMI CTAG 3 cut(s) 144, 219, 339
TaaI ACNGT 3 cut(s) 170, 208, 239
Tru1I TTAA 2 cut(s) 150, 156
Tru9I TTAA 2 cut(s) 150, 156
TseFI GTSAC 2 cut(s) 42, 170
Tsp45I GTSAC 2 cut(s) 42, 170
TspDTI ATGAA 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 82
XmiI GTMKAC 2 cut(s) 234, 343
XspI CTAG 3 cut(s) 144, 219, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.