RLG00000013617

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000508
Physical Location & Seq
Forward (+)
34076597 .. 34078514
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013617

Sequence Viewer

Length: 546 bp
ATGGAAAACACTGATACAAATAGACTGAATTCATTGAAAGACATCGTGATCAAGATGCCCAGACCAGATGATTTATACTTGACTGCTAAAAGTTTCTCAAAGGCTACTTCAGCGGATTGGGCCTTTTTACTCGTTGGTCTCTTCCTAGAGATTTCTTCAGTATCCGTTGACCAGGAATCATCTCCAAGTAAGCCCTTGTATGCTTTCGTTGGTATGCTATTAGCAATTGCAGCTCTACTCACTTGCATATGTGAGCTCATTCACAAGGGTATAAAGGAAAGAGTTGTGCTGAGGCGTTGTGGAATGTTATGGTGGTTTCATTATCCCCGTTCCCGTTACGTACTTTTTGGTACCCTTCCCAATTGCTTCGGATTAGTTGGTGGCATCTTTCAGTGCATTTGCTCGACGATTCAGTATGTTTACTACATTCGGTATGGTAAAGATCCGATCAAAGTTTCCCTTTTGCCTGCCATCTTTCTTATATGTCTGGCTATTTCAAGATTGAATTGGACTCGTAGGGATGAGACCATTGAACAAAATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

182

Amino Acids

20.67

Weight (kDa)

8.68

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 350
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 2 cut(s) 93, 141
AfaI GTAC 2 cut(s) 342, 352
AgsI TTSAA 4 cut(s) 37, 498, 505, 533
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 233, 256
AluI AGCT 2 cut(s) 233, 256
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 2 cut(s) 143, 518
AlwI GGATC 1 cut(s) 437
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 28
Asp718I GGTACC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 120
BanI GGYRCC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 258
BbvCI CCTCAGC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 242
BccI CCATC 1 cut(s) 479
BciT130I CCWGG 1 cut(s) 173
BciVI GTATCC 1 cut(s) 172
BclI TGATCA 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 143, 518
BfaI CTAG 1 cut(s) 146
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 2 cut(s) 45, 393
Bpu10I CCTNAGC 1 cut(s) 290
BsaAI YACGTR 1 cut(s) 340
BsaI GGTCTC 2 cut(s) 143, 518
BseBI CCWGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 258
BsmAI GTCTC 2 cut(s) 143, 518
BsnI GGCC 1 cut(s) 122
Bso31I GGTCTC 2 cut(s) 143, 518
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 3 cut(s) 48, 442, 447
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 350
BspTNI GGTCTC 2 cut(s) 143, 518
BssMI GATC 3 cut(s) 48, 442, 447
Bst2UI CCWGG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 1 cut(s) 290
BstF5I GGATG 1 cut(s) 526
BstKTI GATC 3 cut(s) 51, 445, 450
BstMAI GTCTC 2 cut(s) 143, 518
BstMBI GATC 3 cut(s) 48, 442, 447
BstMWI GCNNNNNNNGC 3 cut(s) 110, 119, 230
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstSNI TACGTA 1 cut(s) 340
BstV1I GCAGC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 526
BtsIMutI CAGTG 2 cut(s) 9, 398
Cac8I GCNNGC 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 120
Csp6I GTAC 2 cut(s) 341, 351
CviJI RGCY 6 cut(s) 104, 122, 193, 233, 256, 491
CviKI_1 RGCY 6 cut(s) 104, 122, 193, 233, 256, 491
CviQI GTAC 2 cut(s) 341, 351
DdeI CTNAG 1 cut(s) 290
DpnI GATC 3 cut(s) 50, 444, 449
DpnII GATC 3 cut(s) 48, 442, 447
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Ecl136II GAGCTC 1 cut(s) 256
Eco105I TACGTA 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 258
Eco31I GGTCTC 2 cut(s) 143, 518
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 2 cut(s) 93, 141
EcoICRI GAGCTC 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 258
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FauNDI CATATG 1 cut(s) 248
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 533
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 1 cut(s) 146
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 1 cut(s) 122
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 3 cut(s) 176, 409, 511
Hpy166II GTNNAC 2 cut(s) 169, 421
Hpy188I TCNGA 2 cut(s) 371, 447
Hpy188III TCNNGA 3 cut(s) 46, 52, 498
Hpy8I GTNNAC 2 cut(s) 169, 421
Hpy99I CGWCG 1 cut(s) 409
HpyAV CCTTC 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 3 cut(s) 230, 246, 396
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 119, 230
HpyF3I CTNAG 1 cut(s) 290
HpySE526I ACGT 1 cut(s) 339
KpnI GGTACC 1 cut(s) 354
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 3 cut(s) 48, 442, 447
LpnPI CCDG 6 cut(s) 73, 78, 158, 185, 473, 480
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 2 cut(s) 45, 393
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 335
MalI GATC 3 cut(s) 50, 444, 449
MboI GATC 3 cut(s) 48, 442, 447
MboII GAAGA 2 cut(s) 133, 147
MfeI CAATTG 2 cut(s) 225, 361
MflI RGATCY 1 cut(s) 442
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 4 cut(s) 28, 225, 361, 505
MlyI GAGTC 1 cut(s) 505
MnlI CCTC 1 cut(s) 285
MseI TTAA 1 cut(s) 544
MspA1I CMGCKG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 173
MunI CAATTG 2 cut(s) 225, 361
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 3 cut(s) 110, 119, 230
NdeI CATATG 1 cut(s) 248
NdeII GATC 3 cut(s) 48, 442, 447
NlaIV GGNNCC 1 cut(s) 352
PfeI GAWTC 2 cut(s) 176, 409
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
Ppu21I YACGTR 1 cut(s) 340
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 120
PsuI RGATCY 1 cut(s) 442
RsaI GTAC 2 cut(s) 342, 352
RsaNI GTAC 2 cut(s) 341, 351
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 544
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 3 cut(s) 48, 442, 447
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 1 cut(s) 505
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 258
SetI ASST 3 cut(s) 235, 258, 342
SfaNI GCATC 2 cut(s) 45, 393
SnaBI TACGTA 1 cut(s) 340
Sse9I AATT 4 cut(s) 28, 225, 361, 505
SsiI CCGC 1 cut(s) 113
SspMI CTAG 1 cut(s) 146
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 171
TaiI ACGT 1 cut(s) 342
TaqI TCGA 1 cut(s) 404
TasI AATT 4 cut(s) 28, 225, 361, 505
TfiI GAWTC 2 cut(s) 176, 409
Tru1I TTAA 1 cut(s) 544
Tru9I TTAA 1 cut(s) 544
TscAI CASTG 2 cut(s) 16, 398
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 21, 308
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 2 cut(s) 16, 398
XapI RAATTY 1 cut(s) 28
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.