RchiOBHm_Chr6g0258611

Serine threonine-protein kinase PBS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000508
Physical Location & Seq
Forward (+)
13969247 .. 13969771
525 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23187

Sequence Viewer

Length: 450 bp
ATGGCCACTTCAACCGCGTGGATCTTTTTACTCACCAATGTTGGTCTAGAAATTTCTTCAGCTATGTTTGATCAATTTTCCTCCCCAAGTAATAAGCCCCATTTTTCACTAATTAGCATGGTGTTGGCTATTTTGGCTGTGATCATTTCCATCTGGGAGCTCATTCACAAGGGTATAAAGGAGAGAGTGAAATATAGGAGGCAACTGGGAATGTGTGGGTGGTTTTATTCACGTTCCGGTAACAAAATCTTTGGTAGTGTTCCTGACATGTGTGGTTTATTTGGTGGCATCTCTCAGTGGGTCTACTCAACAGTTCAGTATGCTTGCATCCTTCGGCACATTGAGAATCCTTACAAAATATACCTTTGGCCTATCATATTCCTCCTATGCTTGGGTGCTTCAAGGTTACATTGGAACCAAAGAAACATGACCAAAAAATTGAAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.17

Weight (kDa)

9.83

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 303
AccII CGCG 1 cut(s) 17
AciI CCGC 1 cut(s) 15
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 391
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 3 cut(s) 12, 402, 442
AluBI AGCT 2 cut(s) 62, 160
AluI AGCT 2 cut(s) 62, 160
Alw21I GWGCWC 1 cut(s) 162
AlwI GGATC 1 cut(s) 29
AoxI GGCC 2 cut(s) 3, 368
ApoI RAATTY 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 25
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 162
BccI CCATC 1 cut(s) 158
BclI TGATCA 2 cut(s) 70, 141
BfaI CTAG 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 416
BmrI ACTGGG 1 cut(s) 215
BmsI GCATC 2 cut(s) 297, 336
BmuI ACTGGG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 391
Bse1I ACTGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 5, 370
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 391
BsnI GGCC 2 cut(s) 5, 370
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 3 cut(s) 21, 70, 141
BspACI CCGC 1 cut(s) 15
BspANI GGCC 2 cut(s) 5, 370
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 416
BspPI GGATC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 210
BssMI GATC 3 cut(s) 21, 70, 141
Bst4CI ACNGT 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 3 cut(s) 24, 73, 144
BstMBI GATC 3 cut(s) 21, 70, 141
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 271
BstUI CGCG 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BsuRI GGCC 2 cut(s) 5, 370
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 302
Cac8I GCNNGC 1 cut(s) 325
CviAII CATG 3 cut(s) 118, 268, 427
CviJI RGCY 7 cut(s) 5, 62, 97, 128, 137, 160, 370
CviKI_1 RGCY 7 cut(s) 5, 62, 97, 128, 137, 160, 370
DdeI CTNAG 1 cut(s) 294
DpnI GATC 3 cut(s) 23, 72, 143
DpnII GATC 3 cut(s) 21, 70, 141
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 3 cut(s) 121, 271, 430
FatI CATG 3 cut(s) 117, 267, 426
FbaI TGATCA 2 cut(s) 70, 141
FblI GTMKAC 1 cut(s) 303
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 162
FspBI CTAG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 5, 370
HapII CCGG 1 cut(s) 237
Hin1II CATG 3 cut(s) 121, 271, 430
HinfI GANTC 1 cut(s) 346
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 304
Hpy188III TCNNGA 2 cut(s) 47, 263
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 3 cut(s) 121, 271, 430
Ksp22I TGATCA 2 cut(s) 70, 141
Kzo9I GATC 3 cut(s) 21, 70, 141
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 4 cut(s) 139, 191, 250, 276
LweI GCATC 2 cut(s) 297, 336
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 2 cut(s) 239, 405
MalI GATC 3 cut(s) 23, 72, 143
MboI GATC 3 cut(s) 21, 70, 141
MboII GAAGA 1 cut(s) 48
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 162
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 51, 74, 111, 437
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 91, 192, 392
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 237
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 3 cut(s) 21, 70, 141
NlaIII CATG 3 cut(s) 121, 271, 430
NlaIV GGNNCC 1 cut(s) 416
NspI RCATGY 1 cut(s) 271
PciI ACATGT 1 cut(s) 267
PfeI GAWTC 1 cut(s) 346
PscI ACATGT 1 cut(s) 267
Psp124BI GAGCTC 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 416
PsuI RGATCY 1 cut(s) 21
SacI GAGCTC 1 cut(s) 162
Sau3AI GATC 3 cut(s) 21, 70, 141
SduI GDGCHC 1 cut(s) 162
SetI ASST 5 cut(s) 64, 162, 235, 366, 407
SfaNI GCATC 2 cut(s) 297, 336
Sse9I AATT 4 cut(s) 51, 74, 111, 437
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 47
SstI GAGCTC 1 cut(s) 162
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 235
TasI AATT 4 cut(s) 51, 74, 111, 437
TfiI GAWTC 1 cut(s) 346
TscAI CASTG 1 cut(s) 302
TspRI CASTG 1 cut(s) 302
XapI RAATTY 1 cut(s) 51
XbaI TCTAGA 1 cut(s) 46
XceI RCATGY 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.