Rmu_ssc0000213.1_g000005

Serine threonine-protein kinase PBS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000213.1
OG0000508
Physical Location & Seq
Reverse (-)
23742 .. 31105
7364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000213.1_g000005.1.cds

Sequence Viewer

Length: 1086 bp
atggagagccaagaagcttgtgtgattgagatccgaccttctttttcttcaaagagggctttggagaattggaggaagctatctgctggcctcaagaagcccaacaaacgacagtttctcttcaaccctgcggctcgcgccctttggcttaaggagcaggaggaacacattcagaccgtattgcaatttgtgaatgctcgccaggagtctaacagcaggttgtctttgcttggcagtagttccggtgacgagtcaaggcacacaacaaaggctacttcaacagtatgggtcattttactcaccaaccttggcctagagacattatcggccgtctttgatcaaattgcctctccaagcaagcctgactatgcactattcggaatggtgttggcgattttagctgtgctaatttgcatcttggagctcattcacaagggcaaaaaggaaggagttgagctgaaaagatggggaaagttgtgctggttttattatccacctcctaatgaatcactttttgctcccttagagcaagtccacctattgggggtaaatgttaaggtcgaaaagtcaaggggtcgacaagtcaagaaactatttactgccactggacatgactactatctcactgatggtatctatcctacatgggcgactttcgtgaaatcaattccaaggcctacacaacccaaagatctgaagttttcccaggctcaagaggggtacaggaaggatgtggaaagatgtttcagcattttacagtcgcgctttagtattgttcgagaagcggcttatgggtgggatagagaagaccttcgatacatcatgttgacttgtattatattacacaacatgataatcaaggatgaaagaccagatgacagcgatgagcatttggagtccgatgaagaagaggataacaatatgaggcacaggttggctattatttgggaaggaccgactggtgatgactttgatcctgttggtagaaatggttattatttcaacggattcatagatcaatttgatgccattagatgtgcaaacagtcactcaaaccttcaagaatatctgatagagcatttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

361

Amino Acids

41.61

Weight (kDa)

6.24

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
AccB7I CCANNNNNTGG 1 cut(s) 541
AccI GTMKAC 1 cut(s) 577
AccII CGCG 2 cut(s) 138, 763
AciI CCGC 2 cut(s) 131, 785
AclWI GGATC 2 cut(s) 25, 968
AcoI YGGCCR 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 716
AfaI GTAC 1 cut(s) 722
AfiI CCNNNNNNNGG 2 cut(s) 541, 544
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 5 cut(s) 51, 124, 279, 1003, 1061
AjnI CCWGG 2 cut(s) 201, 705
AluBI AGCT 5 cut(s) 17, 79, 401, 424, 457
AluI AGCT 5 cut(s) 17, 79, 401, 424, 457
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 2 cut(s) 25, 968
AoxI GGCC 4 cut(s) 88, 310, 327, 674
Asp700I GAANNNNTTC 2 cut(s) 168, 810
AspLEI GCGC 2 cut(s) 140, 765
AspS9I GGNCC 1 cut(s) 953
AsuHPI GGTGA 3 cut(s) 257, 292, 974
AvaII GGWCC 1 cut(s) 953
BanII GRGCYC 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 813
Bbv12I GWGCWC 1 cut(s) 426
BccI CCATC 2 cut(s) 459, 623
BceAI ACGGC 1 cut(s) 314
BciT130I CCWGG 2 cut(s) 203, 707
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 2 cut(s) 314, 1084
BfrI CTTAAG 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 207
BglII AGATCT 1 cut(s) 691
BisI GCNGC 2 cut(s) 132, 786
BlsI GCNGC 2 cut(s) 133, 787
Bme1390I CCNGG 2 cut(s) 203, 707
Bme18I GGWCC 1 cut(s) 953
BmgT120I GGNCC 1 cut(s) 953
BmrFI CCNGG 2 cut(s) 203, 707
BmsI GCATC 2 cut(s) 423, 1015
BpiI GAAGAC 1 cut(s) 813
BpuEI CTTGAG 2 cut(s) 77, 696
BsaBI GATNNNNATC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 307, 671, 705
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 541, 544
Bse1I ACTGG 2 cut(s) 610, 964
Bse8I GATNNNNATC 1 cut(s) 29
BseBI CCWGG 2 cut(s) 203, 707
BseDI CCNNGG 3 cut(s) 307, 671, 705
BseGI GGATG 2 cut(s) 736, 868
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 2 cut(s) 541, 544
BseNI ACTGG 2 cut(s) 610, 964
BseX3I CGGCCG 1 cut(s) 327
Bsh1236I CGCG 2 cut(s) 138, 763
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 4 cut(s) 90, 312, 329, 676
BsiEI CGRYCG 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 426
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 541, 544
BsmAI GTCTC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 4 cut(s) 90, 312, 329, 676
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 5 cut(s) 30, 337, 691, 973, 1015
BspACI CCGC 2 cut(s) 131, 785
BspANI GGCC 4 cut(s) 90, 312, 329, 676
BspFNI CGCG 2 cut(s) 138, 763
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 2 cut(s) 25, 968
BspTI CTTAAG 1 cut(s) 149
BsrI ACTGG 2 cut(s) 610, 964
BssECI CCNNGG 3 cut(s) 307, 671, 705
BssMI GATC 5 cut(s) 30, 337, 691, 973, 1015
BssT1I CCWWGG 2 cut(s) 307, 671
Bst2UI CCWGG 2 cut(s) 203, 707
Bst4CI ACNGT 5 cut(s) 114, 178, 283, 759, 1046
Bst6I CTCTTC 2 cut(s) 125, 903
BstAFI CTTAAG 1 cut(s) 149
BstC8I GCNNGC 4 cut(s) 88, 136, 199, 359
BstDEI CTNAG 1 cut(s) 523
BstF5I GGATG 2 cut(s) 736, 868
BstFNI CGCG 2 cut(s) 138, 763
BstHHI GCGC 2 cut(s) 140, 765
BstKTI GATC 5 cut(s) 33, 340, 694, 976, 1018
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 5 cut(s) 30, 337, 691, 973, 1015
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 3 cut(s) 137, 154, 398
BstNI CCWGG 2 cut(s) 203, 707
BstSCI CCNGG 2 cut(s) 201, 705
BstUI CGCG 2 cut(s) 138, 763
BstV2I GAAGAC 1 cut(s) 813
BstX2I RGATCY 2 cut(s) 30, 691
BstYI RGATCY 2 cut(s) 30, 691
BstZI CGGCCG 1 cut(s) 327
BsuRI GGCC 4 cut(s) 90, 312, 329, 676
BtgZI GCGATG 1 cut(s) 897
BtsCI GGATG 2 cut(s) 736, 868
BtsIMutI CAGTG 2 cut(s) 603, 624
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 4 cut(s) 88, 136, 199, 359
CfoI GCGC 2 cut(s) 140, 765
Cfr13I GGNCC 1 cut(s) 953
Csp6I GTAC 1 cut(s) 721
CviAII CATG 4 cut(s) 611, 645, 823, 850
CviQI GTAC 1 cut(s) 721
DdeI CTNAG 1 cut(s) 523
DpnI GATC 5 cut(s) 32, 339, 693, 975, 1017
DpnII GATC 5 cut(s) 30, 337, 691, 973, 1015
EaeI YGGCCR 1 cut(s) 327
EagI CGGCCG 1 cut(s) 327
Eam1104I CTCTTC 2 cut(s) 125, 903
EarI CTCTTC 2 cut(s) 125, 903
Ecl136II GAGCTC 1 cut(s) 424
EclXI CGGCCG 1 cut(s) 327
Eco130I CCWWGG 2 cut(s) 307, 671
Eco147I AGGCCT 1 cut(s) 676
Eco24I GRGCYC 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 953
Eco52I CGGCCG 1 cut(s) 327
Eco53kI GAGCTC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 716
EcoICRI GAGCTC 1 cut(s) 424
EcoRII CCWGG 2 cut(s) 201, 705
EcoT14I CCWWGG 2 cut(s) 307, 671
EcoT38I GRGCYC 1 cut(s) 426
ErhI CCWWGG 2 cut(s) 307, 671
FaeI CATG 4 cut(s) 614, 648, 826, 853
FatI CATG 4 cut(s) 610, 644, 822, 849
FbaI TGATCA 1 cut(s) 337
FblI GTMKAC 1 cut(s) 577
Fnu4HI GCNGC 2 cut(s) 132, 786
FokI GGATG 2 cut(s) 743, 875
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 2 cut(s) 132, 786
FspBI CTAG 2 cut(s) 314, 1084
GlaI GCGC 2 cut(s) 139, 764
GluI GCNGC 2 cut(s) 132, 786
HaeIII GGCC 4 cut(s) 90, 312, 329, 676
HapII CCGG 1 cut(s) 243
HhaI GCGC 2 cut(s) 140, 765
Hin1II CATG 4 cut(s) 614, 648, 826, 853
Hin6I GCGC 2 cut(s) 138, 763
HinP1I GCGC 2 cut(s) 138, 763
HincII GTYRAC 2 cut(s) 578, 828
HindII GTYRAC 2 cut(s) 578, 828
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 5 cut(s) 206, 251, 506, 896, 1008
HpaII CCGG 1 cut(s) 243
HphI GGTGA 3 cut(s) 257, 292, 974
Hpy166II GTNNAC 3 cut(s) 535, 578, 828
Hpy188I TCNGA 6 cut(s) 35, 174, 380, 696, 901, 1071
Hpy188III TCNNGA 6 cut(s) 94, 586, 658, 713, 779, 1061
Hpy8I GTNNAC 3 cut(s) 535, 578, 828
HpyAV CCTTC 6 cut(s) 48, 440, 721, 821, 944, 1067
HpyCH4III ACNGT 5 cut(s) 114, 178, 283, 759, 1046
HpyCH4V TGCA 4 cut(s) 184, 371, 414, 1040
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 154, 398
HpyF3I CTNAG 1 cut(s) 523
Hsp92II CATG 4 cut(s) 614, 648, 826, 853
HspAI GCGC 2 cut(s) 138, 763
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 5 cut(s) 30, 337, 691, 973, 1015
LmnI GCTCC 3 cut(s) 154, 421, 523
LweI GCATC 2 cut(s) 423, 1015
MaeI CTAG 2 cut(s) 314, 1084
MaeIII GTNAC 2 cut(s) 245, 1046
MalI GATC 5 cut(s) 32, 339, 693, 975, 1017
MboI GATC 5 cut(s) 30, 337, 691, 973, 1015
MboII GAAGA 5 cut(s) 39, 112, 818, 917, 920
MflI RGATCY 2 cut(s) 30, 691
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 6 cut(s) 67, 185, 342, 408, 666, 1019
MlyI GAGTC 3 cut(s) 215, 260, 905
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 9 cut(s) 48, 66, 101, 154, 358, 507, 709, 904, 918
MroXI GAANNNNTTC 2 cut(s) 168, 810
MseI TTAA 2 cut(s) 150, 555
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 2 cut(s) 203, 707
Mva1269I GAATGC 1 cut(s) 199
MvaI CCWGG 2 cut(s) 203, 707
MvnI CGCG 2 cut(s) 138, 763
MwoI GCNNNNNNNGC 3 cut(s) 137, 154, 398
NdeII GATC 5 cut(s) 30, 337, 691, 973, 1015
NlaIII CATG 4 cut(s) 614, 648, 826, 853
NmuCI GTSAC 2 cut(s) 245, 1046
PceI AGGCCT 1 cut(s) 676
PctI GAATGC 1 cut(s) 199
PdmI GAANNNNTTC 2 cut(s) 168, 810
PfeI GAWTC 2 cut(s) 506, 1008
PflMI CCANNNNNTGG 1 cut(s) 541
PkrI GCNGC 2 cut(s) 133, 787
PleI GAGTC 3 cut(s) 214, 259, 904
PpsI GAGTC 3 cut(s) 214, 259, 904
Psp124BI GAGCTC 1 cut(s) 426
Psp6I CCWGG 2 cut(s) 201, 705
PspGI CCWGG 2 cut(s) 201, 705
PspPI GGNCC 1 cut(s) 953
PsuI RGATCY 2 cut(s) 30, 691
RsaI GTAC 1 cut(s) 722
RsaNI GTAC 1 cut(s) 721
SacI GAGCTC 1 cut(s) 426
SalI GTCGAC 1 cut(s) 576
SaqAI TTAA 2 cut(s) 150, 555
SatI GCNGC 2 cut(s) 132, 786
Sau3AI GATC 5 cut(s) 30, 337, 691, 973, 1015
Sau96I GGNCC 1 cut(s) 953
SchI GAGTC 3 cut(s) 215, 260, 905
ScrFI CCNGG 2 cut(s) 203, 707
SduI GDGCHC 1 cut(s) 426
SfaNI GCATC 2 cut(s) 423, 1015
SinI GGWCC 1 cut(s) 953
SmlI CTYRAG 3 cut(s) 92, 149, 711
SmoI CTYRAG 3 cut(s) 92, 149, 711
Sse9I AATT 6 cut(s) 67, 185, 342, 408, 666, 1019
SseBI AGGCCT 1 cut(s) 676
SsiI CCGC 2 cut(s) 131, 785
SspMI CTAG 2 cut(s) 314, 1084
SstI GAGCTC 1 cut(s) 426
StuI AGGCCT 1 cut(s) 676
StyD4I CCNGG 2 cut(s) 201, 705
StyI CCWWGG 2 cut(s) 307, 671
TaaI ACNGT 5 cut(s) 114, 178, 283, 759, 1046
TaqI TCGA 4 cut(s) 561, 577, 778, 814
TaqII GACCGA 1 cut(s) 970
TasI AATT 6 cut(s) 67, 185, 342, 408, 666, 1019
TauI GCSGC 2 cut(s) 134, 788
TfiI GAWTC 2 cut(s) 506, 1008
Tru1I TTAA 2 cut(s) 150, 555
Tru9I TTAA 2 cut(s) 150, 555
TscAI CASTG 2 cut(s) 610, 631
TseFI GTSAC 2 cut(s) 245, 1046
Tsp45I GTSAC 2 cut(s) 245, 1046
TspDTI ATGAA 4 cut(s) 519, 879, 918, 1000
TspGWI ACGGA 1 cut(s) 1020
TspRI CASTG 2 cut(s) 610, 631
Van91I CCANNNNNTGG 1 cut(s) 541
Vha464I CTTAAG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 953
XmiI GTMKAC 1 cut(s) 577
XmnI GAANNNNTTC 2 cut(s) 168, 810
XspI CTAG 2 cut(s) 314, 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.