MD11G1218200.v1.1

Serine threonine-protein kinase PBS1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
31811594 .. 31812771
1178 bp
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UTR
Exon/CDS
Intron
MD11G1218200.v1.1.491

Sequence Viewer

Length: 342 bp
ATGCTATTGGCAATCGTGGCTGTGCTTGTTTGCATCTGGGAGCTCGTTCACAATGGTAAAAAGGAAAGAATTGTATTGAGGAGGAGGGGAATACTATGGTGTTTTTACTATCCACCTCCAAACAACACGCTTTTTGGTACATTCGCTGAAATTACTGGATTATGCCTTGCCACTGCTCAATGCATTTGCTCGGCAGTGCAGTATCATTTCATCCGTCGTCATGCTACTAATCCTATGAAACTGTCCCCTTTGGCTGCCGTATTCTTTTTGGGTTTGGTTGTTTCAAAATTAGTTCAGAATCAGCGGTTCACCGTTGATGACACGCTTCAGAATGGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.77

Weight (kDa)

9.4

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 304
AcuI CTGAAG 1 cut(s) 311
AfaI GTAC 2 cut(s) 139, 337
AgsI TTSAA 1 cut(s) 285
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw21I GWGCWC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 301
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 241
BceAI ACGGC 1 cut(s) 242
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
BmsI GCATC 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 2 cut(s) 94, 97
BseXI GCAGC 1 cut(s) 241
BsgI GTGCAG 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 45
BslFI GGGAC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 45
BspACI CCGC 1 cut(s) 304
BsrI ACTGG 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 243, 313
BstF5I GGATG 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 241
BtsCI GGATG 1 cut(s) 210
BtsI GCAGTG 2 cut(s) 171, 201
BtsIMutI CAGTG 2 cut(s) 171, 201
Csp6I GTAC 2 cut(s) 138, 336
CviAII CATG 1 cut(s) 221
CviJI RGCY 3 cut(s) 20, 43, 254
CviKI_1 RGCY 3 cut(s) 20, 43, 254
CviQI GTAC 2 cut(s) 138, 336
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 43
EcoT22I ATGCAT 1 cut(s) 185
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 1 cut(s) 224
FaiI YATR 4 cut(s) 97, 163, 222, 236
FaqI GGGAC 1 cut(s) 229
FatI CATG 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 255
Hin1II CATG 1 cut(s) 224
HinfI GANTC 1 cut(s) 298
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 2 cut(s) 49, 309
Hpy188I TCNGA 2 cut(s) 297, 330
Hpy8I GTNNAC 2 cut(s) 49, 309
Hpy99I CGWCG 1 cut(s) 219
HpyCH4III ACNGT 2 cut(s) 243, 313
HpyCH4V TGCA 3 cut(s) 33, 183, 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 224
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 2 cut(s) 22, 141
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 3 cut(s) 69, 150, 287
MnlI CCTC 4 cut(s) 72, 75, 78, 126
Mph1103I ATGCAT 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 17
NlaIII CATG 1 cut(s) 224
NmeAIII GCCGAG 1 cut(s) 170
NsiI ATGCAT 1 cut(s) 185
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 1 cut(s) 256
Psp124BI GAGCTC 1 cut(s) 45
RsaI GTAC 2 cut(s) 139, 337
RsaNI GTAC 2 cut(s) 138, 336
SacI GAGCTC 1 cut(s) 45
SatI GCNGC 1 cut(s) 255
SduI GDGCHC 1 cut(s) 45
SetI ASST 2 cut(s) 45, 118
SfaNI GCATC 1 cut(s) 42
Sse9I AATT 3 cut(s) 69, 150, 287
SsiI CCGC 1 cut(s) 304
SstI GAGCTC 1 cut(s) 45
TaaI ACNGT 2 cut(s) 243, 313
TasI AATT 3 cut(s) 69, 150, 287
TfiI GAWTC 1 cut(s) 298
TscAI CASTG 2 cut(s) 178, 201
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 199, 251
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 2 cut(s) 178, 201
Zsp2I ATGCAT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.