Rh6AG210900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000508
Physical Location & Seq
Reverse (-)
37579576 .. 37588793
9218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG210900.1

Sequence Viewer

Length: 342 bp
ATGGCTAGGTCGGAGGCCAGCAGCGGTCGAGGCTCCACCAGGAGAGATCAGATATTGAAGCGGAAAAAAACCGGACTTTGGGCATTTAGGGTTTCATTAGGAAGACTAATGTTACTCATGAGTTTCGTGAACAAATGGAATGAAGTACAGGTTATAGAAGAAATTACTGAAGCACTGTGGAACAAACTACATTCTAGACTCAGTCCAACCGAAAAGCTGCACCCAACATCCACACACAACTTGGTCGCATTCACTAGCATTAGTGTTAATGAGGACCACCGTGACCATAACCATCCAATAAACATTACAGATGTGACGGTAAAAACTCCGAATTGTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.92

Weight (kDa)

9.89

Isoelectric Point (pI)

62.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 24, 61
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 1 cut(s) 58
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 2 cut(s) 21, 217
AspS9I GGNCC 1 cut(s) 274
AvaII GGWCC 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 109
BbvI GCAGC 2 cut(s) 33, 204
BccI CCATC 1 cut(s) 300
BciT130I CCWGG 1 cut(s) 40
BfaI CTAG 3 cut(s) 6, 195, 255
BisI GCNGC 2 cut(s) 22, 218
BlsI GCNGC 2 cut(s) 23, 219
Bme1390I CCNGG 1 cut(s) 40
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 40
BseGI GGATG 2 cut(s) 227, 292
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 214
BseXI GCAGC 2 cut(s) 33, 204
BsgI GTGCAG 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 1 cut(s) 17
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 78
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 1 cut(s) 17
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 2 cut(s) 24, 61
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 213
BspHI TCATGA 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 34
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 3 cut(s) 177, 281, 319
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 227, 292
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 33, 204
BstV2I GAAGAC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 17
BtsCI GGATG 2 cut(s) 227, 292
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 19
CciI TCATGA 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 146
CviAII CATG 1 cut(s) 118
CviJI RGCY 4 cut(s) 5, 17, 33, 217
CviKI_1 RGCY 4 cut(s) 5, 17, 33, 217
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 1 cut(s) 200
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 38
FaeI CATG 1 cut(s) 121
FaiI YATR 3 cut(s) 119, 155, 288
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 22, 218
FokI GGATG 2 cut(s) 214, 279
Fsp4HI GCNGC 2 cut(s) 22, 218
FspBI CTAG 3 cut(s) 6, 195, 255
GluI GCNGC 2 cut(s) 22, 218
HaeIII GGCC 1 cut(s) 17
HapII CCGG 1 cut(s) 72
Hin1II CATG 1 cut(s) 121
HinfI GANTC 1 cut(s) 198
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 3 cut(s) 13, 51, 330
Hpy188III TCNNGA 3 cut(s) 118, 127, 195
Hpy8I GTNNAC 1 cut(s) 130
HpyCH4III ACNGT 3 cut(s) 177, 281, 319
HpyCH4V TGCA 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 1 cut(s) 121
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 5 cut(s) 25, 31, 52, 85, 134
Lsp1109I GCAGC 2 cut(s) 33, 204
MaeI CTAG 3 cut(s) 6, 195, 255
MaeIII GTNAC 3 cut(s) 111, 281, 313
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 114, 170
MluCI AATT 2 cut(s) 162, 331
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 3 cut(s) 7, 23, 265
MseI TTAA 2 cut(s) 267, 340
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 248
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 30
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 34
NmuCI GTSAC 2 cut(s) 281, 313
PagI TCATGA 1 cut(s) 117
PctI GAATGC 1 cut(s) 248
PflFI GACNNNGTC 1 cut(s) 201
PkrI GCNGC 2 cut(s) 23, 219
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 274
PsyI GACNNNGTC 1 cut(s) 201
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 267, 340
SatI GCNGC 2 cut(s) 22, 218
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 40
SetI ASST 3 cut(s) 11, 153, 219
SinI GGWCC 1 cut(s) 274
Sse9I AATT 2 cut(s) 162, 331
SsiI CCGC 2 cut(s) 24, 61
SspMI CTAG 3 cut(s) 6, 195, 255
StyD4I CCNGG 1 cut(s) 38
TaaI ACNGT 3 cut(s) 177, 281, 319
TaqI TCGA 1 cut(s) 28
TasI AATT 2 cut(s) 162, 331
TatI WGTACW 1 cut(s) 145
Tru1I TTAA 2 cut(s) 267, 340
Tru9I TTAA 2 cut(s) 267, 340
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 2 cut(s) 281, 313
TseI GCWGC 2 cut(s) 21, 217
Tsp45I GTSAC 2 cut(s) 281, 313
TspDTI ATGAA 2 cut(s) 84, 156
TspRI CASTG 1 cut(s) 180
Tth111I GACNNNGTC 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 274
XbaI TCTAGA 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XspI CTAG 3 cut(s) 6, 195, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.