RchiOBHm_Chr6g0276291

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000508
Physical Location & Seq
Reverse (-)
38285297 .. 38287528
2232 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24786

Sequence Viewer

Length: 1098 bp
ATGGTGTTGAACAAGCACATTCCATTACGGATATCTATTCCTTTTAATTCTCTATGGGCGTGTGATGTCTTCCTAAGTTGCGAGCATGAAGACATCTTCTCCGACCACTTGTACTACAAATTGCAGTCTCGAGGAATTAGTATTTTCCAGGATGACCAAGGATCCTTGCAAAGAAGCACAACTCCTCTTGAGCTCTTTGGTGCAATCGAAGAATCGAGGTTTGCCGTTATTGTTCTCTCGCAAAATTATGCTTCTTCGCCCCGGCGCTTGAATGAACTTTTAAAAATTCTAGAGTGCATGAAAGATCGGAACAGGATTCTGCCGGTATTTCGTGATGTTAATCTCTTGGATGTCCAAAAACAAAAAGGTATTTTTGAGAGAGCATTCGACAAGCATGAAGAAAGGTTTCAGGATGACTTGGAAAAGGTTCAAGCCTGGAGAGATGCTTTAACCAAAGTGTGCAATTTCGCTGGATGGACTACCAATGATAGGAATGAAGTACAGGTTATAGAAGAAATTACTGAAGCACTGTGGAACAAACTACATTCTAGAATCAGTCCAACGGAAAAACTGCAGCCGACATCCACACACAACTTGGTCGCATTCACTAGCGTTAATGTTAATGAGGACTACCGTGACCATAACCATCCAATACACATTACAGATATGACGCCTTCTTCAGTAGAGTGGAACTTTTTGATCACTAACCTTGGCCTAGAGATTTTGTCAGCTGCTTTTGATCAGGCTTCCTCGTCAAGTAAGCCACACTATGCACTATTTGGTATGCTGTTTTCTATTGCAGCCTTGTTCACTTGCATTTGGGAGCTCATTTACAAGGGCATAAAGAATAGAGTAGCATTGAAGAAGTTCGGAAAGCTCTGGTGGTTTTATTATCCACATCCCCACAATAGCATGCCTTTCGGTACTCTCCCTGAGATTTACGGATTAATTGGAAGCATCGCTCAGTGCATATGCTCTATAACTCAATACATTTACTTCTCTTGGCATGCTGATAGTCCCATAAAACTCTCACTTTTACCAGCAATCTTTCTTTTCTGTTTGGCTGGTTCAAGACTAAATAGGAATCAAAACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

365

Amino Acids

42.22

Weight (kDa)

6.53

Isoelectric Point (pI)

54.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 23 - 185 2.3e-31 TIR domain
TIR_2 PF13676 23 - 115 2.5e-11 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 156, 169
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 2 cut(s) 543, 663
AcyI GRCGYC 1 cut(s) 671
AfaI GTAC 3 cut(s) 113, 501, 925
AfiI CCNNNNNNNGG 1 cut(s) 489
AgsI TTSAA 5 cut(s) 10, 271, 431, 862, 1071
AjnI CCWGG 2 cut(s) 147, 434
AluBI AGCT 4 cut(s) 193, 731, 826, 877
AluI AGCT 4 cut(s) 193, 731, 826, 877
Alw21I GWGCWC 2 cut(s) 195, 828
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 2 cut(s) 156, 169
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 1 cut(s) 712
ApeKI GCWGC 3 cut(s) 574, 731, 800
ApoI RAATTY 1 cut(s) 285
AseI ATTAAT 1 cut(s) 947
Asp700I GAANNNNTTC 3 cut(s) 405, 426, 866
AspLEI GCGC 1 cut(s) 267
AsuC2I CCSGG 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 129
BamHI GGATCC 1 cut(s) 161
BanII GRGCYC 2 cut(s) 195, 828
BbsI GAAGAC 2 cut(s) 61, 96
Bbv12I GWGCWC 2 cut(s) 195, 828
BbvI GCAGC 3 cut(s) 586, 718, 812
BccI CCATC 2 cut(s) 468, 654
BceAI ACGGC 1 cut(s) 209
BcgI CGANNNNNNTGC 2 cut(s) 901, 935
BciT130I CCWGG 2 cut(s) 149, 436
BclI TGATCA 2 cut(s) 699, 739
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 4 cut(s) 290, 549, 609, 716
BfmI CTRYAG 1 cut(s) 572
BfoI RGCGCY 1 cut(s) 268
BisI GCNGC 3 cut(s) 575, 732, 801
BlsI GCNGC 3 cut(s) 576, 733, 802
Bme1390I CCNGG 3 cut(s) 149, 262, 436
BmeT110I CYCGRG 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 3 cut(s) 149, 262, 436
BmsI GCATC 2 cut(s) 433, 966
BpiI GAAGAC 2 cut(s) 61, 96
BpmI CTGGAG 1 cut(s) 457
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 671
BsaJI CCNNGG 3 cut(s) 157, 260, 709
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 489
Bse118I RCCGGY 1 cut(s) 322
Bse8I GATNNNNATC 1 cut(s) 339
BseBI CCWGG 2 cut(s) 149, 436
BseDI CCNNGG 3 cut(s) 157, 260, 709
BseGI GGATG 7 cut(s) 157, 355, 418, 479, 581, 646, 898
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 489
BseMII CTCAG 2 cut(s) 924, 977
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 3 cut(s) 586, 718, 812
BshFI GGCC 1 cut(s) 714
BsiHKAI GWGCWC 2 cut(s) 195, 828
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 2 cut(s) 262, 323
BslFI GGGAC 1 cut(s) 1002
BslI CCNNNNNNNGG 1 cut(s) 489
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 1002
BsmI GAATGC 2 cut(s) 383, 602
BsnI GGCC 1 cut(s) 714
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 195, 828
Bsp143I GATC 4 cut(s) 161, 304, 699, 739
BspANI GGCC 1 cut(s) 714
BspCNI CTCAG 2 cut(s) 925, 976
BspLI GGNNCC 1 cut(s) 163
BspMAI CTGCAG 1 cut(s) 576
BspPI GGATC 2 cut(s) 156, 169
BsrFI RCCGGY 1 cut(s) 322
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 3 cut(s) 157, 260, 709
BssMI GATC 4 cut(s) 161, 304, 699, 739
BssNI GRCGYC 1 cut(s) 671
BssT1I CCWWGG 2 cut(s) 157, 709
Bst2UI CCWGG 2 cut(s) 149, 436
Bst4CI ACNGT 2 cut(s) 531, 635
BstACI GRCGYC 1 cut(s) 671
BstC8I GCNNGC 3 cut(s) 83, 914, 1008
BstDEI CTNAG 3 cut(s) 74, 933, 963
BstF5I GGATG 7 cut(s) 157, 355, 418, 479, 581, 646, 898
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 4 cut(s) 164, 307, 702, 742
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 4 cut(s) 161, 304, 699, 739
BstNI CCWGG 2 cut(s) 149, 436
BstNSI RCATGY 2 cut(s) 916, 1010
BstSCI CCNGG 3 cut(s) 147, 260, 434
BstSFI CTRYAG 1 cut(s) 572
BstV1I GCAGC 3 cut(s) 586, 718, 812
BstV2I GAAGAC 2 cut(s) 61, 96
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BsuRI GGCC 1 cut(s) 714
BtgZI GCGATG 1 cut(s) 943
BtsCI GGATG 7 cut(s) 157, 355, 418, 479, 581, 646, 898
BtsIMutI CAGTG 2 cut(s) 527, 971
Cac8I GCNNGC 3 cut(s) 83, 914, 1008
CfoI GCGC 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 322
CseI GACGC 1 cut(s) 679
Csp6I GTAC 3 cut(s) 112, 500, 924
CviAII CATG 5 cut(s) 86, 298, 395, 913, 1007
CviQI GTAC 3 cut(s) 112, 500, 924
DdeI CTNAG 3 cut(s) 74, 933, 963
DpnI GATC 4 cut(s) 163, 306, 701, 741
DpnII GATC 4 cut(s) 161, 304, 699, 739
DraI TTTAAA 1 cut(s) 282
Ecl136II GAGCTC 2 cut(s) 193, 826
Eco130I CCWWGG 2 cut(s) 157, 709
Eco24I GRGCYC 2 cut(s) 195, 828
Eco32I GATATC 1 cut(s) 33
Eco53kI GAGCTC 2 cut(s) 193, 826
Eco57I CTGAAG 2 cut(s) 543, 663
Eco88I CYCGRG 1 cut(s) 129
EcoICRI GAGCTC 2 cut(s) 193, 826
EcoRII CCWGG 2 cut(s) 147, 434
EcoRV GATATC 1 cut(s) 33
EcoT14I CCWWGG 2 cut(s) 157, 709
EcoT38I GRGCYC 2 cut(s) 195, 828
ErhI CCWWGG 2 cut(s) 157, 709
FaeI CATG 5 cut(s) 89, 301, 398, 916, 1010
FaqI GGGAC 1 cut(s) 1002
FatI CATG 5 cut(s) 85, 297, 394, 912, 1006
FauNDI CATATG 1 cut(s) 971
FbaI TGATCA 2 cut(s) 699, 739
Fnu4HI GCNGC 3 cut(s) 575, 732, 801
FokI GGATG 7 cut(s) 164, 362, 425, 486, 568, 633, 885
FriOI GRGCYC 2 cut(s) 195, 828
Fsp4HI GCNGC 3 cut(s) 575, 732, 801
FspBI CTAG 4 cut(s) 290, 549, 609, 716
GlaI GCGC 1 cut(s) 266
GluI GCNGC 3 cut(s) 575, 732, 801
GsuI CTGGAG 1 cut(s) 457
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 1 cut(s) 714
HapII CCGG 2 cut(s) 262, 323
HgaI GACGC 1 cut(s) 679
HhaI GCGC 1 cut(s) 267
Hin1I GRCGYC 1 cut(s) 671
Hin1II CATG 5 cut(s) 89, 301, 398, 916, 1010
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HinfI GANTC 4 cut(s) 212, 316, 552, 1084
HpaII CCGG 2 cut(s) 262, 323
Hpy166II GTNNAC 1 cut(s) 810
Hpy188I TCNGA 3 cut(s) 103, 309, 872
Hpy188III TCNNGA 7 cut(s) 129, 188, 290, 332, 410, 549, 1071
Hpy8I GTNNAC 1 cut(s) 810
HpyAV CCTTC 1 cut(s) 684
HpyCH4III ACNGT 2 cut(s) 531, 635
HpyF3I CTNAG 3 cut(s) 74, 933, 963
Hsp92I GRCGYC 1 cut(s) 671
Hsp92II CATG 5 cut(s) 89, 301, 398, 916, 1010
HspAI GCGC 1 cut(s) 265
Ksp22I TGATCA 2 cut(s) 699, 739
Kzo9I GATC 4 cut(s) 161, 304, 699, 739
LmnI GCTCC 1 cut(s) 823
Lsp1109I GCAGC 3 cut(s) 586, 718, 812
LweI GCATC 2 cut(s) 433, 966
MaeI CTAG 4 cut(s) 290, 549, 609, 716
MaeIII GTNAC 1 cut(s) 635
MalI GATC 4 cut(s) 163, 306, 701, 741
MboI GATC 4 cut(s) 161, 304, 699, 739
MboII GAAGA 9 cut(s) 61, 88, 101, 221, 246, 410, 524, 669, 874
MflI RGATCY 1 cut(s) 161
MhlI GDGCHC 2 cut(s) 195, 828
MluCI AATT 8 cut(s) 46, 119, 135, 244, 285, 463, 516, 948
MmeI TCCRAC 2 cut(s) 126, 584
MnlI CCTC 5 cut(s) 125, 195, 210, 619, 760
MroXI GAANNNNTTC 3 cut(s) 405, 426, 866
MseI TTAA 7 cut(s) 45, 281, 339, 449, 615, 621, 947
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 2 cut(s) 262, 323
MspR9I CCNGG 3 cut(s) 149, 262, 436
Mva1269I GAATGC 2 cut(s) 383, 602
MvaI CCWGG 2 cut(s) 149, 436
NciI CCSGG 1 cut(s) 262
NdeI CATATG 1 cut(s) 971
NdeII GATC 4 cut(s) 161, 304, 699, 739
NlaIII CATG 5 cut(s) 89, 301, 398, 916, 1010
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 635
NspI RCATGY 2 cut(s) 916, 1010
PaeI GCATGC 2 cut(s) 916, 1010
PaeR7I CTCGAG 1 cut(s) 129
PctI GAATGC 2 cut(s) 383, 602
PdmI GAANNNNTTC 3 cut(s) 405, 426, 866
PfeI GAWTC 4 cut(s) 212, 316, 552, 1084
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 3 cut(s) 576, 733, 802
PshBI ATTAAT 1 cut(s) 947
Psp124BI GAGCTC 2 cut(s) 195, 828
Psp6I CCWGG 2 cut(s) 147, 434
PspGI CCWGG 2 cut(s) 147, 434
PspN4I GGNNCC 1 cut(s) 163
PstI CTGCAG 1 cut(s) 576
PsuI RGATCY 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 3 cut(s) 113, 501, 925
RsaNI GTAC 3 cut(s) 112, 500, 924
SacI GAGCTC 2 cut(s) 195, 828
SaqAI TTAA 7 cut(s) 45, 281, 339, 449, 615, 621, 947
SatI GCNGC 3 cut(s) 575, 732, 801
Sau3AI GATC 4 cut(s) 161, 304, 699, 739
ScrFI CCNGG 3 cut(s) 149, 262, 436
SduI GDGCHC 2 cut(s) 195, 828
SfaNI GCATC 2 cut(s) 433, 966
SfcI CTRYAG 1 cut(s) 572
Sfr274I CTCGAG 1 cut(s) 129
SlaI CTCGAG 1 cut(s) 129
SmlI CTYRAG 2 cut(s) 129, 188
SmoI CTYRAG 2 cut(s) 129, 188
SphI GCATGC 2 cut(s) 916, 1010
Sse9I AATT 8 cut(s) 46, 119, 135, 244, 285, 463, 516, 948
SspMI CTAG 4 cut(s) 290, 549, 609, 716
SstI GAGCTC 2 cut(s) 195, 828
StyD4I CCNGG 3 cut(s) 147, 260, 434
StyI CCWWGG 2 cut(s) 157, 709
TaaI ACNGT 2 cut(s) 531, 635
TaqI TCGA 4 cut(s) 130, 207, 215, 387
TasI AATT 8 cut(s) 46, 119, 135, 244, 285, 463, 516, 948
TatI WGTACW 2 cut(s) 111, 499
TfiI GAWTC 4 cut(s) 212, 316, 552, 1084
Tru1I TTAA 7 cut(s) 45, 281, 339, 449, 615, 621, 947
Tru9I TTAA 7 cut(s) 45, 281, 339, 449, 615, 621, 947
TscAI CASTG 2 cut(s) 534, 971
TseFI GTSAC 1 cut(s) 635
TseI GCWGC 3 cut(s) 574, 731, 800
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 5 cut(s) 102, 288, 314, 411, 510
TspGWI ACGGA 3 cut(s) 43, 578, 957
TspRI CASTG 2 cut(s) 534, 971
VspI ATTAAT 1 cut(s) 947
XapI RAATTY 1 cut(s) 285
XbaI TCTAGA 2 cut(s) 289, 548
XceI RCATGY 2 cut(s) 916, 1010
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XhoI CTCGAG 1 cut(s) 129
XmnI GAANNNNTTC 3 cut(s) 405, 426, 866
XspI CTAG 4 cut(s) 290, 549, 609, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.