Rorug06G0074900

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000508
Physical Location & Seq
Reverse (-)
9928404 .. 9928937
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0074900.1

Sequence Viewer

Length: 534 bp
ATGGATGGAAAGTTCTTCATTGCCGCCAGTTTGCTTAAACCACAGCTCGAGCAAATTTTAGACGAACATCGTCCTCATTGTCTTGTTGCTGATGCTTTCTTTCCTTTTGCTACAGATGTTGCTGCTAAGTTTGGAATTCCAAGGCTATATTTTCATGGAACTAGTTTCTTCCCTTTGTGTGCTTCATTGAGTGTGATGATATATCAACCTCACAGGAAGTTGTCAACCGACTCAGAATCTTTCGTGATTCCTAATCTCCCATATGAAATCAAGATAACAAGAAACCAAATCCAAAATTTTTTTAAGCTAGATGCTGAAGTAGGATTCACCAAGTTCTTCAAAGCAGCCATAGAGAGTGAGGAAAGGAGCTATGGGGTCATTGTTAACAGCTTTTATGAACTTGAACCTGTTTATGCAGATCATTACAGGAAGGTGTTTGGGAGGAAGGCATGGCATATTGGCCCGGTTTCATTATGCAACAAGCCAACAGATAAAGCAGAGAAGGGACCGGAAGCCTCTGTTGATGAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

177

Amino Acids

20.21

Weight (kDa)

6.38

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 24
AcsI RAATTY 3 cut(s) 54, 135, 295
AcuI CTGAAG 1 cut(s) 336
AgsI TTSAA 2 cut(s) 340, 404
AhlI ACTAGT 1 cut(s) 161
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 4 cut(s) 46, 307, 369, 390
AluI AGCT 4 cut(s) 46, 307, 369, 390
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 1 cut(s) 460
ApeKI GCWGC 2 cut(s) 122, 344
ApoI RAATTY 3 cut(s) 54, 135, 295
AspS9I GGNCC 2 cut(s) 461, 506
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 1 cut(s) 319
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 1 cut(s) 506
BbvI GCAGC 2 cut(s) 109, 356
BcnI CCSGG 1 cut(s) 464
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 3 cut(s) 162, 308, 532
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 3 cut(s) 24, 123, 345
BlsI GCNGC 3 cut(s) 25, 124, 346
Bme1390I CCNGG 1 cut(s) 464
Bme18I GGWCC 1 cut(s) 506
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 2 cut(s) 461, 506
BmiI GGNNCC 1 cut(s) 507
BmrFI CCNGG 1 cut(s) 464
BmsI GCATC 2 cut(s) 82, 301
BpuMI CCSGG 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 508
Bse1I ACTGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 27
BseXI GCAGC 2 cut(s) 109, 356
BshFI GGCC 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 2 cut(s) 464, 509
BslFI GGGAC 1 cut(s) 519
BsmFI GGGAC 1 cut(s) 519
BsnI GGCC 1 cut(s) 462
BsoBI CYCGRG 1 cut(s) 47
Bsp143I GATC 1 cut(s) 418
BspACI CCGC 1 cut(s) 24
BspANI GGCC 1 cut(s) 462
BspCNI CTCAG 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 507
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 1 cut(s) 418
BssT1I CCWWGG 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 126, 232
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 421
BstMBI GATC 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 462
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 109, 356
BsuRI GGCC 1 cut(s) 462
BtsCI GGATG 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 461, 506
CviAII CATG 2 cut(s) 155, 450
CviJI RGCY 9 cut(s) 46, 145, 307, 347, 369, 390, 462, 484, 515
CviKI_1 RGCY 9 cut(s) 46, 145, 307, 347, 369, 390, 462, 484, 515
DdeI CTNAG 2 cut(s) 126, 232
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 506
Eco57I CTGAAG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 47
EcoRI GAATTC 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 2 cut(s) 158, 453
FaqI GGGAC 1 cut(s) 519
FatI CATG 2 cut(s) 154, 449
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 24, 123, 345
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 24, 123, 345
FspBI CTAG 3 cut(s) 162, 308, 532
GluI GCNGC 3 cut(s) 24, 123, 345
HaeIII GGCC 1 cut(s) 462
HapII CCGG 2 cut(s) 464, 509
Hin1II CATG 2 cut(s) 158, 453
HincII GTYRAC 2 cut(s) 225, 385
HindII GTYRAC 2 cut(s) 225, 385
HinfI GANTC 4 cut(s) 230, 236, 247, 324
HpaI GTTAAC 1 cut(s) 385
HpaII CCGG 2 cut(s) 464, 509
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 2 cut(s) 225, 385
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 2 cut(s) 244, 271
Hpy8I GTNNAC 2 cut(s) 225, 385
HpyAV CCTTC 3 cut(s) 424, 439, 496
HpyCH4V TGCA 2 cut(s) 416, 477
HpyF3I CTNAG 2 cut(s) 126, 232
Hsp92II CATG 2 cut(s) 158, 453
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 1 cut(s) 418
LmnI GCTCC 1 cut(s) 366
LpnPI CCDG 6 cut(s) 40, 199, 412, 420, 477, 522
Lsp1109I GCAGC 2 cut(s) 109, 356
LweI GCATC 2 cut(s) 82, 301
MaeI CTAG 3 cut(s) 162, 308, 532
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 3 cut(s) 7, 160, 328
MluCI AATT 3 cut(s) 54, 135, 295
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 5 cut(s) 84, 219, 352, 435, 526
MseI TTAA 3 cut(s) 36, 303, 384
MspI CCGG 2 cut(s) 464, 509
MspR9I CCNGG 1 cut(s) 464
NciI CCSGG 1 cut(s) 464
NdeI CATATG 1 cut(s) 262
NdeII GATC 1 cut(s) 418
NlaIII CATG 2 cut(s) 158, 453
NlaIV GGNNCC 1 cut(s) 507
PaeR7I CTCGAG 1 cut(s) 47
PfeI GAWTC 3 cut(s) 236, 247, 324
PkrI GCNGC 3 cut(s) 25, 124, 346
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 2 cut(s) 461, 506
PspXI VCTCGAGB 1 cut(s) 47
SaqAI TTAA 3 cut(s) 36, 303, 384
SatI GCNGC 3 cut(s) 24, 123, 345
Sau3AI GATC 1 cut(s) 418
Sau96I GGNCC 2 cut(s) 461, 506
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 464
SetI ASST 7 cut(s) 48, 211, 309, 371, 392, 409, 435
SfaNI GCATC 2 cut(s) 82, 301
SfcI CTRYAG 1 cut(s) 111
Sfr274I CTCGAG 1 cut(s) 47
SinI GGWCC 1 cut(s) 506
SlaI CTCGAG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
SpeI ACTAGT 1 cut(s) 161
Sse9I AATT 3 cut(s) 54, 135, 295
SsiI CCGC 1 cut(s) 24
SspMI CTAG 3 cut(s) 162, 308, 532
StyD4I CCNGG 1 cut(s) 462
StyI CCWWGG 1 cut(s) 140
TaqI TCGA 1 cut(s) 48
TasI AATT 3 cut(s) 54, 135, 295
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 3 cut(s) 236, 247, 324
Tru1I TTAA 3 cut(s) 36, 303, 384
Tru9I TTAA 3 cut(s) 36, 303, 384
TseI GCWGC 2 cut(s) 122, 344
TspDTI ATGAA 6 cut(s) 7, 143, 174, 279, 411, 459
VpaK11BI GGWCC 1 cut(s) 506
XapI RAATTY 3 cut(s) 54, 135, 295
XhoI CTCGAG 1 cut(s) 47
XspI CTAG 3 cut(s) 162, 308, 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.