Prupe.1G197200_v2.0.a1

Serine threonine-protein kinase PBS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000508
Physical Location & Seq
Forward (+)
18810471 .. 18813559
3089 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G197200.1

Sequence Viewer

Length: 822 bp
ATGAGCTCCTACAACTATAATCTTTATGACGAGCCCATAAAGGCTACTTCAGAATCAGCAGAGTGGATATTTTTTGCCACTATCCTTGGCCTACAGATGTCGTCAGCTGCTTGTGATCAGGCTTCCTCCCCAAGAAAATCCCAGTATGCACTGTTTGGTATGCTGTTGGCTATTGCAGCTGTGCTCATTTCCATCTGGGAGCTAACTTACAGAGGTAAAAAGGAAAGAGTTGTGTTGAGGAGATGGGGAATGCTCTGGTGGTTTTATCATCCACCTCCTCGTAATACGCTTTTTGGTACTCTTCCTGACGTTTATGGAGTAGCTGCTGGCATCTCACAGTGCATTTTCTGTATAGTTCAGTATGTTTACTGCCTTCGGCATGTTGATAATCCTTTCAAAGCATCCCTTTTGCCTGCCATATTTCTTCTGTGTTTAGGTGGTTCAAAACTAAGTAATAACCGAATGAACGCCAATACCACTGATAACAACATCTTGAGAAAGCCTTTGGATAGTCAGACTATTCATGTTCAAGATGACAAGGACTCCAAGGAAAATTCTTCAAGCACGGAAGAAACTTCTAAGCATGCAACCGCCAAGTATTATGCACCTACAAATATACCATCTCTGGATGACCAGGAGGTAGAGGTTGAGAGCAACATAGTTGATTGCCGACGAGTGGCTAGCCAGGAGGTGCTGGCTGGCGATGGGCACGTCGGTGGTGGCTGGGATGAGACGATGGCTAAGCAGGTGCTGCAAGTGGCTCAAGAATGGCAACAATGGCGGTGGCGATTGCAATGGCGGCAACGTGGACATTTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

31.04

Weight (kDa)

6.59

Isoelectric Point (pI)

59.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 736
Acc36I ACCTGC 1 cut(s) 736
AciI CCGC 3 cut(s) 591, 781, 799
AcsI RAATTY 1 cut(s) 553
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 1 cut(s) 676
AgsI TTSAA 4 cut(s) 397, 444, 530, 561
AjiI CACGTC 1 cut(s) 712
AjnI CCWGG 2 cut(s) 633, 684
AleI CACNNNNGTG 1 cut(s) 714
AluBI AGCT 5 cut(s) 6, 107, 179, 202, 323
AluI AGCT 5 cut(s) 6, 107, 179, 202, 323
Alw21I GWGCWC 2 cut(s) 8, 186
Alw26I GTCTC 1 cut(s) 725
AlwNI CAGNNNCTG 1 cut(s) 751
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 4 cut(s) 107, 176, 323, 751
ApoI RAATTY 1 cut(s) 553
AsuNHI GCTAGC 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 711
BanII GRGCYC 2 cut(s) 8, 36
Bbv12I GWGCWC 2 cut(s) 8, 186
BbvI GCAGC 4 cut(s) 94, 188, 310, 738
BccI CCATC 5 cut(s) 200, 237, 628, 698, 730
BciT130I CCWGG 2 cut(s) 635, 686
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 725
BfaI CTAG 1 cut(s) 681
BfmI CTRYAG 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 736
BisI GCNGC 5 cut(s) 108, 177, 324, 752, 800
BlpI GCTNAGC 1 cut(s) 741
BlsI GCNGC 5 cut(s) 109, 178, 325, 753, 801
Bme1390I CCNGG 2 cut(s) 635, 686
BmgBI CACGTC 1 cut(s) 712
BmrFI CCNGG 2 cut(s) 635, 686
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 2 cut(s) 339, 410
BmtI GCTAGC 1 cut(s) 684
BmuI ACTGGG 1 cut(s) 136
Bpu1102I GCTNAGC 1 cut(s) 741
BpuEI CTTGAG 2 cut(s) 514, 747
BsaJI CCNNGG 2 cut(s) 85, 546
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 1 cut(s) 676
Bse1I ACTGG 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 800
BseBI CCWGG 2 cut(s) 635, 686
BseDI CCNNGG 2 cut(s) 85, 546
BseGI GGATG 4 cut(s) 268, 401, 634, 733
BseLI CCNNNNNNNGG 1 cut(s) 676
BseMI GCAATG 1 cut(s) 800
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 2 cut(s) 253, 267
BseSI GKGCMC 1 cut(s) 711
BseXI GCAGC 4 cut(s) 94, 188, 310, 738
BseYI CCCAGC 1 cut(s) 723
BshFI GGCC 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 8, 186
BslI CCNNNNNNNGG 1 cut(s) 676
BsmAI GTCTC 1 cut(s) 725
BsmBI CGTCTC 1 cut(s) 725
BsmI GAATGC 1 cut(s) 255
BsnI GGCC 1 cut(s) 90
Bsp1286I GDGCHC 4 cut(s) 8, 36, 186, 711
Bsp143I GATC 1 cut(s) 115
Bsp1720I GCTNAGC 1 cut(s) 741
BspACI CCGC 3 cut(s) 591, 781, 799
BspANI GGCC 1 cut(s) 90
BspMI ACCTGC 1 cut(s) 736
BspOI GCTAGC 1 cut(s) 684
BsrDI GCAATG 1 cut(s) 800
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 85, 546
BssMI GATC 1 cut(s) 115
BssT1I CCWWGG 2 cut(s) 85, 546
Bst2UI CCWGG 2 cut(s) 635, 686
Bst4CI ACNGT 2 cut(s) 153, 339
Bst6I CTCTTC 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 751
BstC8I GCNNGC 6 cut(s) 328, 414, 585, 682, 696, 700
BstDEI CTNAG 3 cut(s) 449, 579, 741
BstF5I GGATG 4 cut(s) 268, 401, 634, 733
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 725
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 4 cut(s) 176, 751, 778, 799
BstNI CCWGG 2 cut(s) 635, 686
BstNSI RCATGY 2 cut(s) 383, 587
BstSCI CCNGG 2 cut(s) 633, 684
BstSFI CTRYAG 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 711
BstV1I GCAGC 4 cut(s) 94, 188, 310, 738
BsuRI GGCC 1 cut(s) 90
BtgZI GCGATG 1 cut(s) 717
BtrI CACGTC 1 cut(s) 712
BtsCI GGATG 4 cut(s) 268, 401, 634, 733
BtsIMutI CAGTG 3 cut(s) 149, 344, 477
BveI ACCTGC 1 cut(s) 736
Cac8I GCNNGC 6 cut(s) 328, 414, 585, 682, 696, 700
CaiI CAGNNNCTG 1 cut(s) 751
Csp6I GTAC 1 cut(s) 297
CspCI CAANNNNNGTGG 4 cut(s) 67, 102, 764, 799
CviAII CATG 3 cut(s) 380, 524, 584
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 3 cut(s) 449, 579, 741
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 85, 546
Eco24I GRGCYC 2 cut(s) 8, 36
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 633, 684
EcoT14I CCWWGG 2 cut(s) 85, 546
EcoT38I GRGCYC 2 cut(s) 8, 36
ErhI CCWWGG 2 cut(s) 85, 546
Esp3I CGTCTC 1 cut(s) 725
FaeI CATG 3 cut(s) 383, 527, 587
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FatI CATG 3 cut(s) 379, 523, 583
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 5 cut(s) 108, 177, 324, 752, 800
FokI GGATG 4 cut(s) 255, 388, 641, 740
FriOI GRGCYC 2 cut(s) 8, 36
Fsp4HI GCNGC 5 cut(s) 108, 177, 324, 752, 800
FspBI CTAG 1 cut(s) 681
GluI GCNGC 5 cut(s) 108, 177, 324, 752, 800
GsaI CCCAGC 1 cut(s) 727
HaeIII GGCC 1 cut(s) 90
Hin1II CATG 3 cut(s) 383, 527, 587
HinfI GANTC 2 cut(s) 53, 542
Hpy166II GTNNAC 2 cut(s) 367, 809
Hpy188I TCNGA 2 cut(s) 52, 516
Hpy188III TCNNGA 5 cut(s) 305, 493, 530, 626, 764
Hpy8I GTNNAC 2 cut(s) 367, 809
Hpy99I CGWCG 2 cut(s) 675, 716
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 2 cut(s) 153, 339
HpyCH4IV ACGT 3 cut(s) 309, 711, 805
HpyCH4V TGCA 7 cut(s) 149, 176, 342, 587, 605, 754, 793
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 751, 778, 799
HpyF3I CTNAG 3 cut(s) 449, 579, 741
HpySE526I ACGT 3 cut(s) 309, 711, 805
Hsp92II CATG 3 cut(s) 383, 527, 587
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 2 cut(s) 11, 199
Lsp1109I GCAGC 4 cut(s) 94, 188, 310, 738
LweI GCATC 2 cut(s) 339, 410
MaeI CTAG 1 cut(s) 681
MaeII ACGT 3 cut(s) 309, 711, 805
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 4 cut(s) 293, 416, 549, 581
MhlI GDGCHC 4 cut(s) 8, 36, 186, 711
MluCI AATT 1 cut(s) 553
MlyI GAGTC 1 cut(s) 536
MnlI CCTC 8 cut(s) 136, 206, 231, 285, 288, 631, 637, 682
MslI CAYNNNNRTG 1 cut(s) 714
MspA1I CMGCKG 2 cut(s) 107, 179
MspR9I CCNGG 2 cut(s) 635, 686
Mva1269I GAATGC 1 cut(s) 255
MvaI CCWGG 2 cut(s) 635, 686
MwoI GCNNNNNNNGC 4 cut(s) 176, 751, 778, 799
NdeII GATC 1 cut(s) 115
NheI GCTAGC 1 cut(s) 680
NlaIII CATG 3 cut(s) 383, 527, 587
NspI RCATGY 2 cut(s) 383, 587
OliI CACNNNNGTG 1 cut(s) 714
PaeI GCATGC 1 cut(s) 587
PaqCI CACCTGC 1 cut(s) 736
PctI GAATGC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 53
PkrI GCNGC 5 cut(s) 109, 178, 325, 753, 801
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 633, 684
PspFI CCCAGC 1 cut(s) 723
PspGI CCWGG 2 cut(s) 633, 684
PstNI CAGNNNCTG 1 cut(s) 751
PvuII CAGCTG 2 cut(s) 107, 179
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
RseI CAYNNNNRTG 1 cut(s) 714
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 5 cut(s) 108, 177, 324, 752, 800
Sau3AI GATC 1 cut(s) 115
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 2 cut(s) 635, 686
SduI GDGCHC 4 cut(s) 8, 36, 186, 711
SfaNI GCATC 2 cut(s) 339, 410
SfcI CTRYAG 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 714
SmlI CTYRAG 2 cut(s) 493, 762
SmoI CTYRAG 2 cut(s) 493, 762
SphI GCATGC 1 cut(s) 587
Sse9I AATT 1 cut(s) 553
SsiI CCGC 3 cut(s) 591, 781, 799
SspMI CTAG 1 cut(s) 681
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 633, 684
StyI CCWWGG 2 cut(s) 85, 546
TaaI ACNGT 2 cut(s) 153, 339
TaiI ACGT 3 cut(s) 312, 714, 808
TasI AATT 1 cut(s) 553
TauI GCSGC 1 cut(s) 802
TfiI GAWTC 1 cut(s) 53
TscAI CASTG 3 cut(s) 156, 344, 484
TseI GCWGC 4 cut(s) 107, 176, 323, 751
TspDTI ATGAA 2 cut(s) 479, 512
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 3 cut(s) 156, 344, 484
XapI RAATTY 1 cut(s) 553
XceI RCATGY 2 cut(s) 383, 587
XspI CTAG 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.