RLG00000013406

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000508
Physical Location & Seq
Forward (+)
31128198 .. 31130987
2790 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013406

Sequence Viewer

Length: 993 bp
ATGGCCTCCTCCTCAGTTCCTAAGTACAAGGTCTTCCTGAGCAGCTCTAGCAAGGATGCGGGCAATTTTTCATACCTTTTACACAAAGGTTTGGAGGATAAAGGAATTCTCACTCTCAGAGGCAACCAAGAGGTTGAGGGAGGAGGCACAGCTTCCCTGGACGTAATCAGACAATCGCGGTTGGCCATAGTCATTGTCTCGCCAGACTATGCTTCTTCCCCTCGGCTCTTGCAACAACTTGTACAGATTCTTCAAGCAAATAAACTACATGTTATGCAAGTTTTACCAGTTTTTCACCTTGTCAATCCCTCCGATGTCCGACACCAAAGGGGAACGATTGGAGAAAGCCTGAAGAAGCACGTACAATACCAGGTCGAAGAGATAAACGGATGGAGGCAGGCTTTGACAACGGTGGCAAATTTAAGTGGATGGAATACTGGGGACTTTAAGGATCAAACACGGCTTATAAAAGCAATCGAGGAATACGTCTTGGAACGTGTGCGTGTGCCACGACGCGGCAGCATCATTAGAAAGATACTATTCTCAAGTGAGGAAAAGGAGCAGATTATTGAGCAACCTGTAGACGAGGTCACCAGCAATATCAGTGTCGAGGAGGAGATTGAGCAACCTGGAGACGACGTCACCAGCAATATCAGCAACATCACTGCCGAGGAGGAGATTATTGAGCAACCTGTAGACGAGGTCAGCAGCAATAGCAGTGTCGAGGAGATTATTGAGCAACCTGTAGACGAGGTCAGCAGCAATAGCAGTGTCGAGGAGGAGATTATTGAGCAACATGTAGACGAGGAGGAGATCATTGAGCAACCTGTAGCCGAGGTCACCGGCAACACCAGTGTCAAGGAGGAGATTAAGCAACCAGTAGACGTGGTCGCTGGCAATACCTGCAGTGTCAAGGAGAAGATCATCAGCATTGGTGTCGATGGGCACATCAATAAGCATGAGGAGCAAAAGGGCACAGCGCATACTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

331

Amino Acids

36.62

Weight (kDa)

4.74

Isoelectric Point (pI)

68.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 8 - 166 3.1e-30 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AatII GACGTC 1 cut(s) 642
Acc36I ACCTGC 1 cut(s) 911
AccI GTMKAC 5 cut(s) 582, 696, 747, 801, 882
AccII CGCG 2 cut(s) 178, 516
AciI CCGC 3 cut(s) 59, 178, 516
AclWI GGATC 1 cut(s) 459
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 2 cut(s) 105, 418
AcuI CTGAAG 1 cut(s) 371
AcyI GRCGYC 1 cut(s) 639
AfaI GTAC 3 cut(s) 26, 243, 363
AfiI CCNNNNNNNGG 1 cut(s) 515
AflIII ACRYGT 3 cut(s) 268, 496, 796
AgsI TTSAA 1 cut(s) 254
AjiI CACGTC 1 cut(s) 886
AjnI CCWGG 3 cut(s) 156, 369, 628
AluBI AGCT 2 cut(s) 45, 152
AluI AGCT 2 cut(s) 45, 152
Alw26I GTCTC 2 cut(s) 202, 627
AlwI GGATC 1 cut(s) 459
AoxI GGCC 2 cut(s) 3, 183
ApeKI GCWGC 4 cut(s) 42, 519, 708, 759
ApoI RAATTY 2 cut(s) 105, 418
AspLEI GCGC 1 cut(s) 982
AsuHPI GGTGA 4 cut(s) 287, 583, 634, 832
BaeGI GKGCMC 2 cut(s) 948, 977
BalI TGGCCA 1 cut(s) 185
BarI GAAGNNNNNNTAC 4 cut(s) 17, 49, 234, 266
BbsI GAAGAC 1 cut(s) 25
BbvI GCAGC 4 cut(s) 54, 531, 720, 771
BccI CCATC 3 cut(s) 384, 423, 935
BceAI ACGGC 1 cut(s) 476
BcgI CGANNNNNNTGC 2 cut(s) 919, 953
BciT130I CCWGG 3 cut(s) 158, 371, 630
BcoDI GTCTC 2 cut(s) 202, 627
BfaI CTAG 1 cut(s) 48
BfmI CTRYAG 5 cut(s) 579, 693, 744, 828, 904
BfuAI ACCTGC 1 cut(s) 911
BisI GCNGC 5 cut(s) 43, 517, 520, 709, 760
BlsI GCNGC 5 cut(s) 44, 518, 521, 710, 761
Bme1390I CCNGG 3 cut(s) 158, 371, 630
BmgBI CACGTC 1 cut(s) 886
BmrFI CCNGG 3 cut(s) 158, 371, 630
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 2 cut(s) 46, 531
BmuI ACTGGG 1 cut(s) 447
BpiI GAAGAC 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 651
Bpu10I CCTNAGC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 529
BsaAI YACGTR 1 cut(s) 361
BsaHI GRCGYC 1 cut(s) 639
BsaJI CCNNGG 4 cut(s) 156, 221, 669, 834
BsaXI ACNNNNNCTCC 2 cut(s) 624, 654
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse118I RCCGGY 1 cut(s) 842
Bse1I ACTGG 4 cut(s) 287, 442, 852, 878
BseBI CCWGG 3 cut(s) 158, 371, 630
BseDI CCNNGG 4 cut(s) 156, 221, 669, 834
BseGI GGATG 3 cut(s) 61, 395, 434
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMII CTCAG 3 cut(s) 27, 29, 130
BseNI ACTGG 4 cut(s) 287, 442, 852, 878
BseSI GKGCMC 2 cut(s) 948, 977
BseXI GCAGC 4 cut(s) 54, 531, 720, 771
Bsh1236I CGCG 2 cut(s) 178, 516
BshFI GGCC 2 cut(s) 5, 185
BsiSI CCGG 1 cut(s) 843
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 2 cut(s) 202, 627
BsmBI CGTCTC 1 cut(s) 627
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 2 cut(s) 5, 185
Bsp1286I GDGCHC 2 cut(s) 948, 977
Bsp1407I TGTACA 1 cut(s) 241
Bsp143I GATC 3 cut(s) 451, 813, 921
BspACI CCGC 3 cut(s) 59, 178, 516
BspANI GGCC 2 cut(s) 5, 185
BspCNI CTCAG 3 cut(s) 26, 30, 129
BspFNI CGCG 2 cut(s) 178, 516
BspMAI CTGCAG 1 cut(s) 908
BspMI ACCTGC 1 cut(s) 911
BspPI GGATC 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 842
BsrGI TGTACA 1 cut(s) 241
BsrI ACTGG 4 cut(s) 287, 442, 852, 878
BssAI RCCGGY 1 cut(s) 842
BssECI CCNNGG 4 cut(s) 156, 221, 669, 834
BssMI GATC 3 cut(s) 451, 813, 921
BssNI GRCGYC 1 cut(s) 639
Bst2UI CCWGG 3 cut(s) 158, 371, 630
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 372
BstACI GRCGYC 1 cut(s) 639
BstAPI GCANNNNNTGC 1 cut(s) 903
BstAUI TGTACA 1 cut(s) 241
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 61, 399, 895
BstDEI CTNAG 4 cut(s) 13, 21, 38, 116
BstEII GGTNACC 2 cut(s) 589, 838
BstF5I GGATG 3 cut(s) 61, 395, 434
BstFNI CGCG 2 cut(s) 178, 516
BstHHI GCGC 1 cut(s) 982
BstKTI GATC 3 cut(s) 454, 816, 924
BstMAI GTCTC 2 cut(s) 202, 627
BstMBI GATC 3 cut(s) 451, 813, 921
BstMWI GCNNNNNNNGC 6 cut(s) 48, 654, 714, 765, 903, 964
BstNI CCWGG 3 cut(s) 158, 371, 630
BstNSI RCATGY 2 cut(s) 272, 800
BstPI GGTNACC 2 cut(s) 589, 838
BstSCI CCNGG 3 cut(s) 156, 369, 628
BstSFI CTRYAG 5 cut(s) 579, 693, 744, 828, 904
BstSLI GKGCMC 2 cut(s) 948, 977
BstUI CGCG 2 cut(s) 178, 516
BstV1I GCAGC 4 cut(s) 54, 531, 720, 771
BstV2I GAAGAC 1 cut(s) 25
BsuRI GGCC 2 cut(s) 5, 185
BtrI CACGTC 1 cut(s) 886
BtsCI GGATG 3 cut(s) 61, 395, 434
BtsI GCAGTG 4 cut(s) 663, 724, 775, 913
BtsIMutI CAGTG 6 cut(s) 610, 663, 724, 775, 859, 913
BveI ACCTGC 1 cut(s) 911
Cac8I GCNNGC 3 cut(s) 61, 399, 895
CfoI GCGC 1 cut(s) 982
Cfr10I RCCGGY 1 cut(s) 842
CseI GACGC 1 cut(s) 522
CsiI ACCWGGT 1 cut(s) 369
Csp6I GTAC 3 cut(s) 25, 242, 362
CviAII CATG 3 cut(s) 269, 797, 959
CviJI RGCY 9 cut(s) 5, 45, 152, 185, 226, 348, 401, 463, 833
CviKI_1 RGCY 9 cut(s) 5, 45, 152, 185, 226, 348, 401, 463, 833
CviQI GTAC 3 cut(s) 25, 242, 362
DdeI CTNAG 4 cut(s) 13, 21, 38, 116
DpnI GATC 3 cut(s) 453, 815, 923
DpnII GATC 3 cut(s) 451, 813, 921
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 371
Eco91I GGTNACC 2 cut(s) 589, 838
EcoO65I GGTNACC 2 cut(s) 589, 838
EcoRI GAATTC 1 cut(s) 105
EcoRII CCWGG 3 cut(s) 156, 369, 628
Esp3I CGTCTC 1 cut(s) 627
FaeI CATG 3 cut(s) 272, 800, 962
FaiI YATR 9 cut(s) 73, 188, 210, 270, 275, 467, 798, 960, 984
FaqI GGGAC 1 cut(s) 455
FatI CATG 3 cut(s) 268, 796, 958
FauI CCCGC 1 cut(s) 52
FblI GTMKAC 5 cut(s) 582, 696, 747, 801, 882
Fnu4HI GCNGC 5 cut(s) 43, 517, 520, 709, 760
FokI GGATG 3 cut(s) 68, 402, 441
Fsp4HI GCNGC 5 cut(s) 43, 517, 520, 709, 760
FspBI CTAG 1 cut(s) 48
GlaI GCGC 1 cut(s) 981
GluI GCNGC 5 cut(s) 43, 517, 520, 709, 760
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 2 cut(s) 5, 185
HapII CCGG 1 cut(s) 843
HgaI GACGC 1 cut(s) 522
HhaI GCGC 1 cut(s) 982
Hin1I GRCGYC 1 cut(s) 639
Hin1II CATG 3 cut(s) 272, 800, 962
Hin6I GCGC 1 cut(s) 980
HinP1I GCGC 1 cut(s) 980
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 843
HphI GGTGA 4 cut(s) 287, 583, 634, 832
Hpy166II GTNNAC 5 cut(s) 583, 697, 748, 802, 883
Hpy188I TCNGA 4 cut(s) 119, 170, 313, 320
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 5 cut(s) 583, 697, 748, 802, 883
Hpy99I CGWCG 2 cut(s) 516, 641
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 6 cut(s) 162, 360, 486, 496, 639, 885
HpyCH4V TGCA 3 cut(s) 232, 277, 906
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 654, 714, 765, 903, 964
HpyF3I CTNAG 4 cut(s) 13, 21, 38, 116
HpySE526I ACGT 6 cut(s) 162, 360, 486, 496, 639, 885
Hsp92I GRCGYC 1 cut(s) 639
Hsp92II CATG 3 cut(s) 272, 800, 962
HspAI GCGC 1 cut(s) 980
Kzo9I GATC 3 cut(s) 451, 813, 921
LmnI GCTCC 2 cut(s) 559, 964
Lsp1109I GCAGC 4 cut(s) 54, 531, 720, 771
LweI GCATC 2 cut(s) 46, 531
MabI ACCWGGT 1 cut(s) 369
MaeI CTAG 1 cut(s) 48
MaeII ACGT 6 cut(s) 162, 360, 486, 496, 639, 885
MaeIII GTNAC 3 cut(s) 589, 640, 838
MalI GATC 3 cut(s) 453, 815, 923
MboI GATC 3 cut(s) 451, 813, 921
MboII GAAGA 6 cut(s) 25, 207, 242, 364, 389, 931
MhlI GDGCHC 2 cut(s) 948, 977
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 3 cut(s) 64, 105, 418
MluNI TGGCCA 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 343
Mox20I TGGCCA 1 cut(s) 185
MscI TGGCCA 1 cut(s) 185
MseI TTAA 3 cut(s) 422, 447, 870
Msp20I TGGCCA 1 cut(s) 185
MspI CCGG 1 cut(s) 843
MspR9I CCNGG 3 cut(s) 158, 371, 630
MvaI CCWGG 3 cut(s) 158, 371, 630
MvnI CGCG 2 cut(s) 178, 516
MwoI GCNNNNNNNGC 6 cut(s) 48, 654, 714, 765, 903, 964
NdeII GATC 3 cut(s) 451, 813, 921
NlaIII CATG 3 cut(s) 272, 800, 962
NmeAIII GCCGAG 3 cut(s) 202, 694, 859
NmuCI GTSAC 3 cut(s) 589, 640, 838
NspI RCATGY 2 cut(s) 272, 800
PciI ACATGT 2 cut(s) 268, 796
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PfeI GAWTC 1 cut(s) 247
PflFI GACNNNGTC 5 cut(s) 587, 638, 701, 752, 887
PkrI GCNGC 5 cut(s) 44, 518, 521, 710, 761
Ppu21I YACGTR 1 cut(s) 361
PscI ACATGT 2 cut(s) 268, 796
PsiI TTATAA 1 cut(s) 467
Psp6I CCWGG 3 cut(s) 156, 369, 628
PspEI GGTNACC 2 cut(s) 589, 838
PspGI CCWGG 3 cut(s) 156, 369, 628
PstI CTGCAG 1 cut(s) 908
PsyI GACNNNGTC 5 cut(s) 587, 638, 701, 752, 887
RsaI GTAC 3 cut(s) 26, 243, 363
RsaNI GTAC 3 cut(s) 25, 242, 362
SaqAI TTAA 3 cut(s) 422, 447, 870
SatI GCNGC 5 cut(s) 43, 517, 520, 709, 760
Sau3AI GATC 3 cut(s) 451, 813, 921
ScrFI CCNGG 3 cut(s) 158, 371, 630
SduI GDGCHC 2 cut(s) 948, 977
SexAI ACCWGGT 1 cut(s) 369
SfaNI GCATC 2 cut(s) 46, 531
SfcI CTRYAG 5 cut(s) 579, 693, 744, 828, 904
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
Sse9I AATT 3 cut(s) 64, 105, 418
SsiI CCGC 3 cut(s) 59, 178, 516
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 3 cut(s) 156, 369, 628
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 6 cut(s) 165, 363, 489, 499, 642, 888
TaqI TCGA 6 cut(s) 375, 477, 609, 723, 774, 939
TasI AATT 3 cut(s) 64, 105, 418
TatI WGTACW 2 cut(s) 24, 241
TauI GCSGC 1 cut(s) 519
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 3 cut(s) 422, 447, 870
Tru9I TTAA 3 cut(s) 422, 447, 870
TscAI CASTG 6 cut(s) 610, 670, 724, 775, 859, 913
TseFI GTSAC 3 cut(s) 589, 640, 838
TseI GCWGC 4 cut(s) 42, 519, 708, 759
Tsp45I GTSAC 3 cut(s) 589, 640, 838
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 6 cut(s) 610, 670, 724, 775, 859, 913
Tth111I GACNNNGTC 5 cut(s) 587, 638, 701, 752, 887
XapI RAATTY 2 cut(s) 105, 418
XceI RCATGY 2 cut(s) 272, 800
XmiI GTMKAC 5 cut(s) 582, 696, 747, 801, 882
XspI CTAG 1 cut(s) 48
ZraI GACGTC 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.