Prupe.8G119700_v2.0.a1

Serine threonine-protein kinase PBS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000508
Physical Location & Seq
Reverse (-)
14656516 .. 14659243
2728 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G119700.1

Sequence Viewer

Length: 696 bp
ATGGAGCTTGAGCTTCAAGGTCAACCCGGTTCCAGTGGATCGGGCTCCAGCGGATCGCATGTGGTTAGCATCCATGATGAGGAGCTGCCCACACACACCCGATTTCTTAGCCCATCTCCTTCTGTGGACTACAATGCCTACTACAAGCTAAGGCCACCAGAGGTGCCAAAGGATGTTAACAAGGACATCATGTCTAGCTTACAAAAACAAGTAGATGACTATGACAATCCAAAACAAAAACAAGAAGACGACCATAACAAGCCAAAGCACAGGACAAAATTTACTTATTCAGAGAAGTGGATCTTTTTCCTCATTAGCCTTGGGCTAGAGACTATTTCAGCTTCTTTTGATCAGCTTTCGTCCCCAAGTAAGCCCCACTATGCACTATATGGTATGTTGTTGGCTATTGCGGCCGTACTCATTTGCATCTGTGAGCTCATTCACAAGGGTTACAGAGAAAGAGTTGAATTCAAGAGGTGGGGAAGGATATGGTGGTATTACCATCCATATCCACCAAACAGGCTTTTTGGTAATTTTCCTGACATTTGTGGGCTAGTTCTTGCCATCGCTCAAAGCATTTGCTCTGGGGTTCAGTATGATTACCTCCATCGACATGCTAATAATCCTATCAAACTATCCATTTTGCCTTTCATGTTTCTTTTATCTTTGGGTATTTCGAGATGTTGTAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.48

Weight (kDa)

7.66

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 163
AciI CCGC 2 cut(s) 51, 410
AclWI GGATC 3 cut(s) 46, 61, 308
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 2 cut(s) 278, 467
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 3 cut(s) 17, 467, 472
AhdI GACNNNNNGTC 1 cut(s) 190
AluBI AGCT 8 cut(s) 7, 13, 85, 148, 198, 341, 355, 436
AluI AGCT 8 cut(s) 7, 13, 85, 148, 198, 341, 355, 436
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 3 cut(s) 46, 61, 308
AoxI GGCC 2 cut(s) 152, 411
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 2 cut(s) 278, 467
AsuC2I CCSGG 1 cut(s) 27
BanI GGYRCC 1 cut(s) 163
BanII GRGCYC 2 cut(s) 47, 438
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 72
BccI CCATC 4 cut(s) 121, 510, 572, 615
BceAI ACGGC 1 cut(s) 398
BclI TGATCA 1 cut(s) 349
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 3 cut(s) 195, 326, 554
BisI GCNGC 2 cut(s) 86, 411
BlsI GCNGC 2 cut(s) 87, 412
Bme1390I CCNGG 1 cut(s) 27
BmeRI GACNNNNNGTC 1 cut(s) 190
BmiI GGNNCC 3 cut(s) 31, 46, 165
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 2 cut(s) 78, 435
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 3 cut(s) 69, 178, 502
BseLI CCNNNNNNNGG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 95
BseX3I CGGCCG 1 cut(s) 411
BseXI GCAGC 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 414
BshFI GGCC 2 cut(s) 154, 413
BshNI GGYRCC 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 438
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 323
BsmFI GGGAC 1 cut(s) 346
BsnI GGCC 2 cut(s) 154, 413
Bsp1286I GDGCHC 2 cut(s) 47, 438
Bsp143I GATC 4 cut(s) 38, 53, 300, 349
BspACI CCGC 2 cut(s) 51, 410
BspANI GGCC 2 cut(s) 154, 413
BspLI GGNNCC 3 cut(s) 31, 46, 165
BspPI GGATC 3 cut(s) 46, 61, 308
BspT107I GGYRCC 1 cut(s) 163
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 4 cut(s) 38, 53, 300, 349
BssT1I CCWWGG 1 cut(s) 319
BstDEI CTNAG 2 cut(s) 107, 149
BstF5I GGATG 3 cut(s) 69, 178, 502
BstKTI GATC 4 cut(s) 41, 56, 303, 352
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 4 cut(s) 38, 53, 300, 349
BstMCI CGRYCG 1 cut(s) 414
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNSI RCATGY 2 cut(s) 62, 617
BstSCI CCNGG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 300
BstYI RGATCY 1 cut(s) 300
BstZI CGGCCG 1 cut(s) 411
BsuRI GGCC 2 cut(s) 154, 413
BtgZI GCGATG 1 cut(s) 550
BtsCI GGATG 3 cut(s) 69, 178, 502
BtsIMutI CAGTG 1 cut(s) 40
Csp6I GTAC 1 cut(s) 416
CviAII CATG 5 cut(s) 59, 74, 190, 614, 652
CviQI GTAC 1 cut(s) 416
DdeI CTNAG 2 cut(s) 107, 149
DpnI GATC 4 cut(s) 40, 55, 302, 351
DpnII GATC 4 cut(s) 38, 53, 300, 349
DriI GACNNNNNGTC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 411
EagI CGGCCG 1 cut(s) 411
Eam1105I GACNNNNNGTC 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 436
EclXI CGGCCG 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 319
Eco24I GRGCYC 2 cut(s) 47, 438
Eco52I CGGCCG 1 cut(s) 411
Eco53kI GAGCTC 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 436
EcoRI GAATTC 1 cut(s) 467
EcoT14I CCWWGG 1 cut(s) 319
EcoT38I GRGCYC 2 cut(s) 47, 438
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 5 cut(s) 62, 77, 193, 617, 655
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 1 cut(s) 346
FatI CATG 5 cut(s) 58, 73, 189, 613, 651
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 2 cut(s) 86, 411
FokI GGATG 3 cut(s) 56, 185, 489
FriOI GRGCYC 2 cut(s) 47, 438
Fsp4HI GCNGC 2 cut(s) 86, 411
FspBI CTAG 3 cut(s) 195, 326, 554
GluI GCNGC 2 cut(s) 86, 411
GsuI CTGGAG 1 cut(s) 31
HaeIII GGCC 2 cut(s) 154, 413
HapII CCGG 1 cut(s) 27
Hin1II CATG 5 cut(s) 62, 77, 193, 617, 655
HincII GTYRAC 2 cut(s) 23, 178
HindII GTYRAC 2 cut(s) 23, 178
HpaI GTTAAC 1 cut(s) 178
HpaII CCGG 1 cut(s) 27
Hpy166II GTNNAC 3 cut(s) 23, 127, 178
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 3 cut(s) 472, 539, 678
Hpy8I GTNNAC 3 cut(s) 23, 127, 178
HpyAV CCTTC 2 cut(s) 129, 477
HpyCH4V TGCA 2 cut(s) 383, 426
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 2 cut(s) 107, 149
Hsp92II CATG 5 cut(s) 62, 77, 193, 617, 655
Ksp22I TGATCA 1 cut(s) 349
KspAI GTTAAC 1 cut(s) 178
Kzo9I GATC 4 cut(s) 38, 53, 300, 349
LmnI GCTCC 3 cut(s) 4, 50, 82
LpnPI CCDG 8 cut(s) 40, 46, 61, 171, 256, 505, 552, 570
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 2 cut(s) 78, 435
MaeI CTAG 3 cut(s) 195, 326, 554
MaeIII GTNAC 1 cut(s) 449
MalI GATC 4 cut(s) 40, 55, 302, 351
MboI GATC 4 cut(s) 38, 53, 300, 349
MboII GAAGA 1 cut(s) 257
MflI RGATCY 1 cut(s) 300
MhlI GDGCHC 2 cut(s) 47, 438
MluCI AATT 3 cut(s) 278, 467, 532
MnlI CCTC 5 cut(s) 73, 154, 320, 468, 614
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 51
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 410
NciI CCSGG 1 cut(s) 27
NdeII GATC 4 cut(s) 38, 53, 300, 349
NlaIII CATG 5 cut(s) 62, 77, 193, 617, 655
NlaIV GGNNCC 3 cut(s) 31, 46, 165
NspI RCATGY 2 cut(s) 62, 617
PkrI GCNGC 2 cut(s) 87, 412
Psp124BI GAGCTC 1 cut(s) 438
PspN4I GGNNCC 3 cut(s) 31, 46, 165
PsuI RGATCY 1 cut(s) 300
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
RseI CAYNNNNRTG 1 cut(s) 612
SacI GAGCTC 1 cut(s) 438
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 2 cut(s) 86, 411
Sau3AI GATC 4 cut(s) 38, 53, 300, 349
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 2 cut(s) 47, 438
SfaNI GCATC 2 cut(s) 78, 435
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 3 cut(s) 278, 467, 532
SsiI CCGC 2 cut(s) 51, 410
SspMI CTAG 3 cut(s) 195, 326, 554
SstI GAGCTC 1 cut(s) 438
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 319
TaqI TCGA 2 cut(s) 610, 677
TasI AATT 3 cut(s) 278, 467, 532
TauI GCSGC 1 cut(s) 413
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 40
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 640
TspRI CASTG 1 cut(s) 40
XapI RAATTY 2 cut(s) 278, 467
XceI RCATGY 2 cut(s) 62, 617
XspI CTAG 3 cut(s) 195, 326, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.