RchiOBHm_Chr6g0276221

Serine threonine-protein kinase PBS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000508
Physical Location & Seq
Reverse (-)
38233628 .. 38234053
426 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24779

Sequence Viewer

Length: 327 bp
ATGCTGCTTGCTGTTGCAGCTGTATTCACTTGCATTTGGGAGCTCATTCATAAGAACAGCCTAGTACCGAAGAGGTGGCAAAAACTGCAGTATATATATTATCTACGTCCTTCTGACACTTTCTTCGAAAGTCACCTAGACATTTATGGAGTAGTTAGTAGCATCTCTCAATGCGTTTTCTCCACAGTACAGTATATATACTTCTTTCAGCATGCTGATAGTCCTATCAGATTATCCGCCTTACCTGCCCTCTATCTCATGTGTTTGGTTGGTTCAAGACTCTGGAAGAACCGTTGGAGTGAACGACCTACCCTTGTAGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.64

Weight (kDa)

9.12

Isoelectric Point (pI)

56.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 253
AciI CCGC 1 cut(s) 237
AfaI GTAC 2 cut(s) 66, 189
AgsI TTSAA 1 cut(s) 276
AluBI AGCT 4 cut(s) 20, 43, 320, 324
AluI AGCT 4 cut(s) 20, 43, 320, 324
Alw21I GWGCWC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 4, 17
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AsuHPI GGTGA 1 cut(s) 125
AsuII TTCGAA 1 cut(s) 126
AsuNHI GCTAGC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 45
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 29
BfaI CTAG 4 cut(s) 62, 137, 321, 325
BfmI CTRYAG 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 253
BisI GCNGC 2 cut(s) 5, 18
BlsI GCNGC 2 cut(s) 6, 19
BmsI GCATC 1 cut(s) 171
BmtI GCTAGC 1 cut(s) 324
Bpu14I TTCGAA 1 cut(s) 126
BseXI GCAGC 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 45
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 45
BspACI CCGC 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 90
BspMI ACCTGC 1 cut(s) 253
BspOI GCTAGC 1 cut(s) 324
BspT104I TTCGAA 1 cut(s) 126
Bst4CI ACNGT 3 cut(s) 187, 192, 293
Bst6I CTCTTC 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 3 cut(s) 9, 213, 322
BstMWI GCNNNNNNNGC 3 cut(s) 17, 85, 245
BstNSI RCATGY 1 cut(s) 215
BstSFI CTRYAG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 29
BveI ACCTGC 1 cut(s) 253
Cac8I GCNNGC 3 cut(s) 9, 213, 322
Csp6I GTAC 2 cut(s) 65, 188
CviAII CATG 2 cut(s) 212, 259
CviJI RGCY 5 cut(s) 20, 43, 60, 320, 324
CviKI_1 RGCY 5 cut(s) 20, 43, 60, 320, 324
CviQI GTAC 2 cut(s) 65, 188
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 226
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 2 cut(s) 215, 262
FatI CATG 2 cut(s) 211, 258
Fnu4HI GCNGC 2 cut(s) 5, 18
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 5, 18
FspBI CTAG 4 cut(s) 62, 137, 321, 325
GluI GCNGC 2 cut(s) 5, 18
Hin1II CATG 2 cut(s) 215, 262
HinfI GANTC 1 cut(s) 279
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 2 cut(s) 115, 230
Hpy188III TCNNGA 2 cut(s) 276, 283
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 3 cut(s) 187, 192, 293
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 17, 33, 88
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 85, 245
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 2 cut(s) 215, 262
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 2 cut(s) 258, 268
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 171
MaeI CTAG 4 cut(s) 62, 137, 321, 325
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 131
MboII GAAGA 3 cut(s) 82, 115, 298
MhlI GDGCHC 1 cut(s) 45
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 2 cut(s) 66, 260
MspA1I CMGCKG 1 cut(s) 20
MwoI GCNNNNNNNGC 3 cut(s) 17, 85, 245
NheI GCTAGC 1 cut(s) 320
NlaIII CATG 2 cut(s) 215, 262
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 1 cut(s) 215
NspV TTCGAA 1 cut(s) 126
PaeI GCATGC 1 cut(s) 215
PkrI GCNGC 2 cut(s) 6, 19
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 45
PstI CTGCAG 1 cut(s) 90
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 2 cut(s) 66, 189
RsaNI GTAC 2 cut(s) 65, 188
SacI GAGCTC 1 cut(s) 45
SatI GCNGC 2 cut(s) 5, 18
SchI GAGTC 1 cut(s) 273
SduI GDGCHC 1 cut(s) 45
SetI ASST 9 cut(s) 22, 45, 77, 109, 138, 247, 310, 322, 326
SfaNI GCATC 1 cut(s) 171
SfcI CTRYAG 1 cut(s) 86
SfuI TTCGAA 1 cut(s) 126
SgeI CNNG 9 cut(s) 20, 42, 74, 149, 224, 257, 271, 288, 295
SphI GCATGC 1 cut(s) 215
SsiI CCGC 1 cut(s) 237
SspMI CTAG 4 cut(s) 62, 137, 321, 325
SstI GAGCTC 1 cut(s) 45
TaaI ACNGT 3 cut(s) 187, 192, 293
TaiI ACGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 126
TatI WGTACW 1 cut(s) 187
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 2 cut(s) 4, 17
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 38
XceI RCATGY 1 cut(s) 215
XspI CTAG 4 cut(s) 62, 137, 321, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.