Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000508

Physical Location & Seq

Genomic Coordinates Reverse (-)

38234320 .. 38238674

Gene Structure 4355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24780

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAAGTTTTACCAGTTTTTCACCTTGTCAATCCCTCCGATGTCCGACACCAAAGGGGAACCATTGGGGAAAGCCTGAAGAAGCACGTACAATACCAGGTCGAAGAGATAAACAGATGGAGGCAAGCTTTGGCAACGGTGGCAAATTTCAGTGGATGGAATACTGGGGACGCCAAGGATCAAACACGGGTTATTAAAGAAATCGAGGAATACGTCTTGAAACGCATACCACGCTCCAGTGAGGAAAAGCTTGCGCCGTCCCCGCCGCCGCTCGTCGGCATCCGCCGCATCCGCCTCTTAGTCACCTGCCCCCACCCCCAGCCTCTGCCGCCCCCGCCCCCGCCCCGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009626 GO:0009628 GO:0009639 GO:0009870 GO:0009987 GO:0010114 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

117

Amino Acids

13.38

Weight (kDa)

10.09

Isoelectric Point (pI)

69.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	1 - 77	2.4e-14	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica	MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica	Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis	pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis	RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata	RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora	Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii	Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa	Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha	Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana	Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	271
AciI	CCGC	9 cut(s)	263, 266, 269, 283, 286, 292, 329, 335, 341
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	275, 345
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	2 cut(s)	128, 250
AluI	AGCT	2 cut(s)	128, 250
AlwI	GGATC	1 cut(s)	186
AlwNI	CAGNNNCTG	1 cut(s)	325
ApoI	RAATTY	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	14, 295
BccI	CCATC	2 cut(s)	111, 150
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	346
BfuAI	ACCTGC	1 cut(s)	314
BisI	GCNGC	4 cut(s)	266, 269, 286, 329
BlsI	GCNGC	4 cut(s)	267, 270, 287, 330
Bme1390I	CCNGG	2 cut(s)	98, 346
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	98, 346
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	288, 297
BmuI	ACTGGG	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	220
BpuMI	CCSGG	1 cut(s)	346
BsaAI	YACGTR	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	174, 344
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 345
Bse1I	ACTGG	3 cut(s)	14, 169, 237
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	174, 344
BseGI	GGATG	3 cut(s)	161, 279, 288
BseLI	CCNNNNNNNGG	2 cut(s)	275, 345
BseNI	ACTGG	3 cut(s)	14, 169, 237
BseYI	CCCAGC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	2 cut(s)	182, 244
BslI	CCNNNNNNNGG	2 cut(s)	275, 345
BsmFI	GGGAC	2 cut(s)	182, 244
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	9 cut(s)	263, 266, 269, 283, 286, 292, 329, 335, 341
BspLI	GGNNCC	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	186
BsrBI	CCGCTC	1 cut(s)	271
BsrI	ACTGG	3 cut(s)	14, 169, 237
BssECI	CCNNGG	2 cut(s)	174, 344
BssMI	GATC	1 cut(s)	178
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	126, 252
BstDEI	CTNAG	1 cut(s)	298
BstF5I	GGATG	3 cut(s)	161, 279, 288
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	7 cut(s)	140, 231, 262, 285, 291, 328, 334
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	2 cut(s)	96, 344
BtsCI	GGATG	3 cut(s)	161, 279, 288
BtsIMutI	CAGTG	2 cut(s)	157, 244
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	126, 252
CaiI	CAGNNNCTG	1 cut(s)	325
CfoI	GCGC	1 cut(s)	256
CseI	GACGC	1 cut(s)	179
CsiI	ACCWGGT	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	89
CviJI	RGCY	4 cut(s)	75, 128, 250, 322
CviKI_1	RGCY	4 cut(s)	75, 128, 250, 322
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	1 cut(s)	298
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EciI	GGCGGA	2 cut(s)	272, 281
Eco130I	CCWWGG	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaiI	YATR	1 cut(s)	227
FaqI	GGGAC	2 cut(s)	182, 244
FauI	CCCGC	3 cut(s)	270, 342, 348
Fnu4HI	GCNGC	4 cut(s)	266, 269, 286, 329
FokI	GGATG	3 cut(s)	168, 266, 275
Fsp4HI	GCNGC	4 cut(s)	266, 269, 286, 329
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	4 cut(s)	266, 269, 286, 329
GsaI	CCCAGC	1 cut(s)	322
GsuI	CTGGAG	1 cut(s)	220
HapII	CCGG	1 cut(s)	346
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HindIII	AAGCTT	2 cut(s)	126, 248
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	2 cut(s)	14, 295
Hpy188I	TCNGA	2 cut(s)	40, 47
Hpy188III	TCNNGA	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	87, 213
HpyF10VI	GCNNNNNNNGC	7 cut(s)	140, 231, 262, 285, 291, 328, 334
HpyF3I	CTNAG	1 cut(s)	298
HpySE526I	ACGT	2 cut(s)	87, 213
Hsp92I	GRCGYC	1 cut(s)	171
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	8 cut(s)	27, 83, 89, 110, 150, 250, 319, 332
LweI	GCATC	2 cut(s)	288, 297
MabI	ACCWGGT	1 cut(s)	96
MaeII	ACGT	2 cut(s)	87, 213
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	1 cut(s)	180
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	1 cut(s)	178
MboII	GAAGA	2 cut(s)	91, 116
MluCI	AATT	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	6 cut(s)	46, 114, 199, 235, 305, 333
MseI	TTAA	1 cut(s)	195
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	2 cut(s)	98, 346
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	7 cut(s)	140, 231, 262, 285, 291, 328, 334
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	301
PaqCI	CACCTGC	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PkrI	GCNGC	4 cut(s)	267, 270, 287, 330
Ppu21I	YACGTR	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	325
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	4 cut(s)	266, 269, 286, 329
Sau3AI	GATC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	98, 346
SetI	ASST	7 cut(s)	27, 90, 102, 130, 216, 252, 308
SexAI	ACCWGGT	1 cut(s)	96
SfaNI	GCATC	2 cut(s)	288, 297
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	9 cut(s)	263, 266, 269, 283, 286, 292, 329, 335, 341
StyD4I	CCNGG	2 cut(s)	96, 344
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	2 cut(s)	90, 216
TaqI	TCGA	2 cut(s)	102, 204
TasI	AATT	1 cut(s)	145
TauI	GCSGC	4 cut(s)	268, 271, 288, 331
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	2 cut(s)	157, 244
TseFI	GTSAC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	157, 244
XapI	RAATTY	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.