pycom02g13080

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000508
Physical Location & Seq
Forward (+)
9667317 .. 9668549
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g13080.2

Sequence Viewer

Length: 999 bp
ATGAGTGGAGCAGGCGGCCTTATCGGCGGGGCTGCTCTCGGAACAGCGTTCAATATGCTGTTTGATGTCATCGGTAAGCTGATCACAAGGAATGAAATGTTTGCACCCCACTTGAAACTCATCAAATCCAGGTTAGACTCTTTGGCACCATTGTTGAAAGATATAGAAAAATCCAACAAGAAATCGGATCTATCGGATGAGGAACTGGGAAACTTGAAAGAACAGTTGGAGAAGGGCATACAGCTCCTTCGAAAGTGCGCAAAGACTCAACGGTGGAGCCTATTCGAAAGGTACAAATACACCAACAAGCTGATTAAATGGGATGAATCTCTTCAACAACATTTGAAAATACTACGCGTTGAGGGAATAAGGGATGTGAAGGACACTGCAGTTACGGTGAAGACTATAGAGGAGGCGGTCAGAAGAAATGAATGGAATGAGAACACCATTGGTCTCTATAATTCAAGTTCCAGTGGGTCAGTTACACTAGACATTAGTTCCCAAGATGTAAATCATGAGGTATCTGAGCACCGCCACAAGATGAGGGCAACTTCATCAGAGTGGATCCCGTTACTCACTAACCTTGGCCTAGAGATTCTGTCTGCTGCTTTTGATCAGGTTTCCTCCCCACGTAAGCCTCACTATGCACTAATTGGTATGCTGTTGGCAATTGTGGCTATGCTTGCTTGCATCTGGGAGCTCGTTCACAATGGTATAAAGGAGGGAGTTGTATTGAGGAGGAAGGGAAAGTTATGGTGGTTTTATTATCCATCTCCAAGTAACATGCTTTATGGTACATTCCCCAAAATGCTTGGATTACTTCTTGCCATTGTTCAATGCATTTGCTCAGCAGTGCAGTATTATTACCTCTGTCGGCATGCTACTAATCCTATAAAAATGTCCCCTGTGCCTGTTGTATTCGTTTTCTGTTTGGTTGTTTTAAAATTAGTTGAGCATCGGAGGTACACTGTTGATGGCACCCTTGAGAATCGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

333

Amino Acids

37.62

Weight (kDa)

9.23

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 259
AccB1I GGYRCC 2 cut(s) 145, 977
AccII CGCG 1 cut(s) 357
AciI CCGC 4 cut(s) 15, 27, 416, 532
AclWI GGATC 3 cut(s) 195, 559, 572
AfaI GTAC 3 cut(s) 293, 796, 965
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 8 cut(s) 52, 115, 157, 217, 335, 346, 465, 836
AjnI CCWGG 1 cut(s) 128
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 4 cut(s) 79, 244, 310, 700
AluI AGCT 4 cut(s) 79, 244, 310, 700
Alw21I GWGCWC 2 cut(s) 531, 702
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 3 cut(s) 195, 559, 572
AoxI GGCC 2 cut(s) 16, 586
ApeKI GCWGC 2 cut(s) 32, 605
Asp700I GAANNNNTTC 1 cut(s) 330
AspLEI GCGC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 409
AsuII TTCGAA 2 cut(s) 250, 285
BamHI GGATCC 1 cut(s) 564
BanI GGYRCC 2 cut(s) 145, 977
BanII GRGCYC 1 cut(s) 702
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 2 cut(s) 531, 702
BbvI GCAGC 2 cut(s) 19, 592
BccI CCATC 2 cut(s) 778, 968
BciT130I CCWGG 1 cut(s) 130
BclI TGATCA 2 cut(s) 81, 613
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 2 cut(s) 488, 590
BfmI CTRYAG 2 cut(s) 387, 405
BglI GCCNNNNNGGC 1 cut(s) 24
BisI GCNGC 3 cut(s) 16, 33, 606
BlpI GCTNAGC 1 cut(s) 847
BlsI GCNGC 3 cut(s) 17, 34, 607
Bme1390I CCNGG 1 cut(s) 130
BmiI GGNNCC 4 cut(s) 147, 278, 566, 979
BmrFI CCNGG 1 cut(s) 130
BmrI ACTGGG 1 cut(s) 215
BmsI GCATC 2 cut(s) 699, 964
BmuI ACTGGG 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 407
Bpu1102I GCTNAGC 1 cut(s) 847
Bpu14I TTCGAA 2 cut(s) 250, 285
BsaAI YACGTR 1 cut(s) 632
BsaBI GATNNNNATC 1 cut(s) 510
BsaI GGTCTC 1 cut(s) 458
BsaJI CCNNGG 1 cut(s) 583
Bse1I ACTGG 2 cut(s) 210, 471
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 583
BseGI GGATG 3 cut(s) 202, 328, 379
BseJI GATNNNNATC 1 cut(s) 510
BseMII CTCAG 2 cut(s) 516, 861
BseNI ACTGG 2 cut(s) 210, 471
BseRI GAGGAG 2 cut(s) 425, 751
BseXI GCAGC 2 cut(s) 19, 592
BsgI GTGCAG 1 cut(s) 875
Bsh1236I CGCG 1 cut(s) 357
BshFI GGCC 2 cut(s) 18, 588
BshNI GGYRCC 2 cut(s) 145, 977
BsiHKAI GWGCWC 2 cut(s) 531, 702
BslFI GGGAC 1 cut(s) 886
BsmAI GTCTC 1 cut(s) 458
BsmFI GGGAC 1 cut(s) 886
BsnI GGCC 2 cut(s) 18, 588
Bso31I GGTCTC 1 cut(s) 458
Bsp119I TTCGAA 2 cut(s) 250, 285
Bsp1286I GDGCHC 2 cut(s) 531, 702
Bsp143I GATC 4 cut(s) 81, 187, 564, 613
Bsp1720I GCTNAGC 1 cut(s) 847
BspACI CCGC 4 cut(s) 15, 27, 416, 532
BspANI GGCC 2 cut(s) 18, 588
BspCNI CTCAG 2 cut(s) 517, 860
BspFNI CGCG 1 cut(s) 357
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 4 cut(s) 147, 278, 566, 979
BspMAI CTGCAG 1 cut(s) 391
BspPI GGATC 3 cut(s) 195, 559, 572
BspT104I TTCGAA 2 cut(s) 250, 285
BspT107I GGYRCC 2 cut(s) 145, 977
BspTNI GGTCTC 1 cut(s) 458
BsrI ACTGG 2 cut(s) 210, 471
BssECI CCNNGG 1 cut(s) 583
BssMI GATC 4 cut(s) 81, 187, 564, 613
BssT1I CCWWGG 1 cut(s) 583
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 4 cut(s) 225, 273, 397, 970
Bst6I CTCTTC 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 632
BstBI TTCGAA 2 cut(s) 250, 285
BstC8I GCNNGC 4 cut(s) 13, 684, 688, 879
BstDEI CTNAG 2 cut(s) 525, 847
BstF5I GGATG 3 cut(s) 202, 328, 379
BstFNI CGCG 1 cut(s) 357
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 4 cut(s) 84, 190, 567, 616
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 4 cut(s) 81, 187, 564, 613
BstMWI GCNNNNNNNGC 3 cut(s) 24, 674, 683
BstNI CCWGG 1 cut(s) 130
BstNSI RCATGY 2 cut(s) 787, 881
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 2 cut(s) 387, 405
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 19, 592
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 2 cut(s) 187, 564
BstYI RGATCY 2 cut(s) 187, 564
BsuRI GGCC 2 cut(s) 18, 588
BtsCI GGATG 3 cut(s) 202, 328, 379
BtsI GCAGTG 2 cut(s) 384, 858
BtsIMutI CAGTG 4 cut(s) 384, 478, 858, 966
Cac8I GCNNGC 4 cut(s) 13, 684, 688, 879
CciI TCATGA 1 cut(s) 514
CfoI GCGC 1 cut(s) 260
Csp6I GTAC 3 cut(s) 292, 795, 964
CviAII CATG 3 cut(s) 515, 784, 878
CviQI GTAC 3 cut(s) 292, 795, 964
DdeI CTNAG 2 cut(s) 525, 847
DpnI GATC 4 cut(s) 83, 189, 566, 615
DpnII GATC 4 cut(s) 81, 187, 564, 613
DraI TTTAAA 1 cut(s) 942
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Ecl136II GAGCTC 1 cut(s) 700
Eco130I CCWWGG 1 cut(s) 583
Eco24I GRGCYC 1 cut(s) 702
Eco31I GGTCTC 1 cut(s) 458
Eco53kI GAGCTC 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 700
EcoRII CCWGG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 583
EcoT22I ATGCAT 1 cut(s) 842
EcoT38I GRGCYC 1 cut(s) 702
ErhI CCWWGG 1 cut(s) 583
FaeI CATG 3 cut(s) 518, 787, 881
FaqI GGGAC 1 cut(s) 886
FatI CATG 3 cut(s) 514, 783, 877
FauI CCCGC 1 cut(s) 20
FbaI TGATCA 2 cut(s) 81, 613
Fnu4HI GCNGC 3 cut(s) 16, 33, 606
FokI GGATG 3 cut(s) 209, 335, 386
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 3 cut(s) 16, 33, 606
FspBI CTAG 2 cut(s) 488, 590
FspI TGCGCA 1 cut(s) 259
GlaI GCGC 1 cut(s) 259
GluI GCNGC 3 cut(s) 16, 33, 606
HaeIII GGCC 2 cut(s) 18, 588
HhaI GCGC 1 cut(s) 260
Hin1II CATG 3 cut(s) 518, 787, 881
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HinfI GANTC 5 cut(s) 137, 265, 326, 595, 988
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 2 cut(s) 706, 966
Hpy188I TCNGA 7 cut(s) 41, 187, 196, 422, 526, 559, 960
Hpy188III TCNNGA 1 cut(s) 515
Hpy8I GTNNAC 2 cut(s) 706, 966
HpyAV CCTTC 4 cut(s) 226, 257, 373, 736
HpyCH4III ACNGT 4 cut(s) 225, 273, 397, 970
HpyCH4IV ACGT 1 cut(s) 631
HpyCH4V TGCA 6 cut(s) 104, 389, 647, 690, 840, 856
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 674, 683
HpyF3I CTNAG 2 cut(s) 525, 847
HpySE526I ACGT 1 cut(s) 631
Hsp92II CATG 3 cut(s) 518, 787, 881
HspAI GCGC 1 cut(s) 258
Ksp22I TGATCA 2 cut(s) 81, 613
Kzo9I GATC 4 cut(s) 81, 187, 564, 613
LmnI GCTCC 4 cut(s) 8, 249, 276, 697
LpnPI CCDG 8 cut(s) 115, 142, 191, 484, 602, 679, 918, 924
Lsp1109I GCAGC 2 cut(s) 19, 592
LweI GCATC 2 cut(s) 699, 964
MaeI CTAG 2 cut(s) 488, 590
MaeII ACGT 1 cut(s) 631
MaeIII GTNAC 4 cut(s) 391, 481, 570, 779
MalI GATC 4 cut(s) 83, 189, 566, 615
MboI GATC 4 cut(s) 81, 187, 564, 613
MboII GAAGA 3 cut(s) 323, 412, 435
MfeI CAATTG 1 cut(s) 669
MflI RGATCY 2 cut(s) 187, 564
MhlI GDGCHC 2 cut(s) 531, 702
MluCI AATT 4 cut(s) 460, 651, 669, 944
MluI ACGCGT 1 cut(s) 355
MlyI GAGTC 2 cut(s) 131, 259
MmeI TCCRAC 2 cut(s) 198, 207
Mph1103I ATGCAT 1 cut(s) 842
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 3 cut(s) 315, 941, 997
MslI CAYNNNNRTG 1 cut(s) 559
MspR9I CCNGG 1 cut(s) 130
MunI CAATTG 1 cut(s) 669
MvaI CCWGG 1 cut(s) 130
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 24, 674, 683
NdeII GATC 4 cut(s) 81, 187, 564, 613
NlaIII CATG 3 cut(s) 518, 787, 881
NlaIV GGNNCC 4 cut(s) 147, 278, 566, 979
NsbI TGCGCA 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 842
NspI RCATGY 2 cut(s) 787, 881
NspV TTCGAA 2 cut(s) 250, 285
PaeI GCATGC 1 cut(s) 881
PagI TCATGA 1 cut(s) 514
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 3 cut(s) 326, 595, 988
PkrI GCNGC 3 cut(s) 17, 34, 607
PleI GAGTC 2 cut(s) 131, 259
PpsI GAGTC 2 cut(s) 131, 259
Ppu21I YACGTR 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 702
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 4 cut(s) 147, 278, 566, 979
PstI CTGCAG 1 cut(s) 391
PsuI RGATCY 2 cut(s) 187, 564
RsaI GTAC 3 cut(s) 293, 796, 965
RsaNI GTAC 3 cut(s) 292, 795, 964
RseI CAYNNNNRTG 1 cut(s) 559
SacI GAGCTC 1 cut(s) 702
SaqAI TTAA 3 cut(s) 315, 941, 997
SatI GCNGC 3 cut(s) 16, 33, 606
Sau3AI GATC 4 cut(s) 81, 187, 564, 613
SchI GAGTC 2 cut(s) 131, 259
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 2 cut(s) 531, 702
SfaNI GCATC 2 cut(s) 699, 964
SfcI CTRYAG 2 cut(s) 387, 405
SfuI TTCGAA 2 cut(s) 250, 285
SmiMI CAYNNNNRTG 1 cut(s) 559
SmlI CTYRAG 1 cut(s) 983
SmoI CTYRAG 1 cut(s) 983
SphI GCATGC 1 cut(s) 881
Sse9I AATT 4 cut(s) 460, 651, 669, 944
SsiI CCGC 4 cut(s) 15, 27, 416, 532
SspMI CTAG 2 cut(s) 488, 590
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 4 cut(s) 225, 273, 397, 970
TaiI ACGT 1 cut(s) 634
TaqI TCGA 2 cut(s) 250, 285
TasI AATT 4 cut(s) 460, 651, 669, 944
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 3 cut(s) 326, 595, 988
Tru1I TTAA 3 cut(s) 315, 941, 997
Tru9I TTAA 3 cut(s) 315, 941, 997
TscAI CASTG 4 cut(s) 391, 478, 858, 973
TseI GCWGC 2 cut(s) 32, 605
TspDTI ATGAA 4 cut(s) 108, 339, 444, 543
TspRI CASTG 4 cut(s) 391, 478, 858, 973
XceI RCATGY 2 cut(s) 787, 881
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 2 cut(s) 488, 590
Zsp2I ATGCAT 1 cut(s) 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.