Rh6BG215100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000508
Physical Location & Seq
Reverse (-)
40584795 .. 40600331
15537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG215100.1

Sequence Viewer

Length: 489 bp
ATGGATATCAGTAAGACTATCTTCTGGAATGAAGTACAGGTTATAGAAGAAATTGCTGAAGCACTGTGGAACAAGCTACATTCTAGACTCAGTCCAATGGAAAAACTGCATCCAACATCTACACACAACTTGATGTCTTTGGGTACACACGACGCGTTTCGCAGCAGTTCTTCGATCTCCATTGTTTCTACTCCTGAGTTCTCAATCAGGGTTGATGAGCTGAAGCTGAGTCAGGTTGGCGATGCTCCTCGGAATCTCGCCAGAGAAAGTGTTCGAAGAGAGATCGAGGTACAACAAACTCGGAGGGAGCTCGCCGGAGATTTCGGCGACATCGAGCATCATCGACGGAGTTTGGGAGTTCTTCTTCACGTGGTGACGATGCTTGGAATCGGAGACGGCGAACCACAACTCTCCAAGCTCACAATTCAGGCAGACCATCAAACTCGCCGAGTTTCTGTTTCTATGAATCTTCCGACGCCGTCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.27

Weight (kDa)

6.23

Isoelectric Point (pI)

59.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 155
AcuI CTGAAG 2 cut(s) 78, 242
AcvI CACGTG 1 cut(s) 370
AcyI GRCGYC 1 cut(s) 476
AdeI CACNNNGTG 1 cut(s) 373
AfaI GTAC 3 cut(s) 36, 145, 291
AflIII ACRYGT 1 cut(s) 153
AluBI AGCT 5 cut(s) 76, 220, 226, 310, 418
AluI AGCT 5 cut(s) 76, 220, 226, 310, 418
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 162
Asp700I GAANNNNTTC 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 385
AsuII TTCGAA 1 cut(s) 274
BanII GRGCYC 1 cut(s) 312
BbrPI CACGTG 1 cut(s) 370
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 444
BceAI ACGGC 2 cut(s) 412, 463
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
BmsI GCATC 4 cut(s) 118, 232, 346, 369
Bpu14I TTCGAA 1 cut(s) 274
BsaAI YACGTR 1 cut(s) 370
BsaHI GRCGYC 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 3 cut(s) 103, 186, 218
BseRI GAGGAG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 387
BsmBI CGTCTC 1 cut(s) 387
Bsp119I TTCGAA 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 2 cut(s) 174, 282
BspCNI CTCAG 3 cut(s) 102, 187, 219
BspFNI CGCG 1 cut(s) 155
BspT104I TTCGAA 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 2 cut(s) 174, 282
BssNI GRCGYC 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 271
BstACI GRCGYC 1 cut(s) 476
BstBAI YACGTR 1 cut(s) 370
BstBI TTCGAA 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 3 cut(s) 89, 195, 227
BstF5I GGATG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 155
BstKTI GATC 2 cut(s) 177, 285
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 2 cut(s) 174, 282
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 174
BtgZI GCGATG 1 cut(s) 255
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 312
CseI GACGC 2 cut(s) 161, 484
Csp6I GTAC 3 cut(s) 35, 144, 290
CviJI RGCY 5 cut(s) 76, 220, 226, 310, 418
CviKI_1 RGCY 5 cut(s) 76, 220, 226, 310, 418
CviQI GTAC 3 cut(s) 35, 144, 290
DdeI CTNAG 3 cut(s) 89, 195, 227
DpnI GATC 2 cut(s) 176, 284
DpnII GATC 2 cut(s) 174, 282
DraIII CACNNNGTG 1 cut(s) 373
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 312
Eco32I GATATC 1 cut(s) 7
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 2 cut(s) 78, 242
Eco72I CACGTG 1 cut(s) 370
EcoICRI GAGCTC 1 cut(s) 310
EcoRV GATATC 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 387
FaiI YATR 2 cut(s) 44, 464
FalI AAGNNNNNCTT 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 163
FokI GGATG 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 163
FspBI CTAG 1 cut(s) 84
GluI GCNGC 1 cut(s) 163
HapII CCGG 1 cut(s) 315
HgaI GACGC 2 cut(s) 161, 484
Hin1I GRCGYC 1 cut(s) 476
HinfI GANTC 5 cut(s) 87, 229, 253, 387, 466
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 5 cut(s) 252, 303, 392, 474, 488
Hpy188III TCNNGA 3 cut(s) 25, 84, 194
Hpy8I GTNNAC 1 cut(s) 146
Hpy99I CGWCG 3 cut(s) 155, 348, 478
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 1 cut(s) 109
HpyF3I CTNAG 3 cut(s) 89, 195, 227
HpySE526I ACGT 1 cut(s) 369
Hsp92I GRCGYC 1 cut(s) 476
Kzo9I GATC 2 cut(s) 174, 282
LmnI GCTCC 2 cut(s) 250, 307
LpnPI CCDG 8 cut(s) 10, 23, 193, 207, 218, 274, 328, 413
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 4 cut(s) 118, 232, 346, 369
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 373
MalI GATC 2 cut(s) 176, 284
MboI GATC 2 cut(s) 174, 282
MboII GAAGA 7 cut(s) 13, 59, 162, 288, 353, 356, 461
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 2 cut(s) 51, 423
MluI ACGCGT 1 cut(s) 153
MlyI GAGTC 2 cut(s) 81, 238
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 3 cut(s) 258, 280, 297
MroXI GAANNNNTTC 1 cut(s) 270
MspI CCGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 155
NdeII GATC 2 cut(s) 174, 282
NmeAIII GCCGAG 1 cut(s) 473
NmuCI GTSAC 1 cut(s) 373
NspV TTCGAA 1 cut(s) 274
PcsI WCGNNNNNNNCGW 2 cut(s) 330, 396
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 3 cut(s) 253, 387, 466
PflFI GACNNNGTC 2 cut(s) 90, 478
PkrI GCNGC 1 cut(s) 164
PleI GAGTC 2 cut(s) 81, 237
PmaCI CACGTG 1 cut(s) 370
PmlI CACGTG 1 cut(s) 370
PpsI GAGTC 2 cut(s) 81, 237
Ppu21I YACGTR 1 cut(s) 370
Psp124BI GAGCTC 1 cut(s) 312
PspCI CACGTG 1 cut(s) 370
PsyI GACNNNGTC 2 cut(s) 90, 478
RsaI GTAC 3 cut(s) 36, 145, 291
RsaNI GTAC 3 cut(s) 35, 144, 290
SacI GAGCTC 1 cut(s) 312
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 2 cut(s) 174, 282
SchI GAGTC 2 cut(s) 81, 238
SduI GDGCHC 1 cut(s) 312
SetI ASST 9 cut(s) 42, 78, 222, 228, 237, 291, 312, 372, 420
SfaNI GCATC 4 cut(s) 118, 232, 346, 369
SfuI TTCGAA 1 cut(s) 274
Sse9I AATT 2 cut(s) 51, 423
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 312
TaaI ACNGT 1 cut(s) 66
TaiI ACGT 1 cut(s) 372
TaqI TCGA 5 cut(s) 173, 274, 285, 333, 343
TasI AATT 2 cut(s) 51, 423
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 3 cut(s) 253, 387, 466
TscAI CASTG 1 cut(s) 69
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 2 cut(s) 45, 479
TspGWI ACGGA 1 cut(s) 361
TspRI CASTG 1 cut(s) 69
Tth111I GACNNNGTC 2 cut(s) 90, 478
XbaI TCTAGA 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.