RchiOBHm_Chr1g0372601

Serine threonine-protein kinase PBS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000508
Physical Location & Seq
Reverse (-)
61237120 .. 61237685
566 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59657

Sequence Viewer

Length: 321 bp
ATGTTGATTTCACATCACACCAGTTCAAATGGGACCAACGATGACTATCATGACATGTTGAAGCAGAAGATAAAGTTAGCTAATTTTGAAGACTGGATCTTTTTAATCGTGAGCATCATCCTAGAGCTTCTGTCAGCTGCTTTTGATCAGGCTTCCTCCCCAAGTAAATCAAACTATGCACTAATTGGTATGTTGTTTGCTATTGTTGCTGTAATCAGTTGCATCTGCGAGCTCATTCACAAGGTTAAGAGGGAAGGAGCTAAATTGGGGAGGTGGGGAATGCTGTGGTGGTTTTATCATCCACCTCCCACTATTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.05

Weight (kDa)

6.95

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 3 cut(s) 27, 61, 89
AluBI AGCT 5 cut(s) 80, 127, 137, 232, 260
AluI AGCT 5 cut(s) 80, 127, 137, 232, 260
Alw21I GWGCWC 1 cut(s) 234
AlwI GGATC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 33
AvaII GGWCC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 124
BclI TGATCA 1 cut(s) 145
BfaI CTAG 1 cut(s) 122
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 34
BmsI GCATC 2 cut(s) 123, 231
BpiI GAAGAC 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 45
Bse1I ACTGG 2 cut(s) 21, 98
Bse8I GATNNNNATC 1 cut(s) 45
BseGI GGATG 2 cut(s) 117, 298
BseJI GATNNNNATC 1 cut(s) 45
BseNI ACTGG 2 cut(s) 21, 98
BseXI GCAGC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 234
BslFI GGGAC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 96, 145
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 1 cut(s) 104
BsrI ACTGG 2 cut(s) 21, 98
BssMI GATC 2 cut(s) 96, 145
BstC8I GCNNGC 1 cut(s) 230
BstF5I GGATG 2 cut(s) 117, 298
BstKTI GATC 2 cut(s) 99, 148
BstMBI GATC 2 cut(s) 96, 145
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
BtsCI GGATG 2 cut(s) 117, 298
Cac8I GCNNGC 1 cut(s) 230
CciI TCATGA 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 33
CviAII CATG 2 cut(s) 50, 55
CviJI RGCY 6 cut(s) 80, 127, 137, 152, 232, 260
CviKI_1 RGCY 6 cut(s) 80, 127, 137, 152, 232, 260
DpnI GATC 2 cut(s) 98, 147
DpnII GATC 2 cut(s) 96, 145
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 2 cut(s) 53, 58
FaiI YATR 4 cut(s) 51, 56, 177, 191
FaqI GGGAC 1 cut(s) 46
FatI CATG 2 cut(s) 49, 54
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 2 cut(s) 104, 285
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 1 cut(s) 122
GluI GCNGC 1 cut(s) 138
Hin1II CATG 2 cut(s) 53, 58
Hpy188III TCNNGA 2 cut(s) 50, 109
HpyAV CCTTC 1 cut(s) 248
HpyCH4V TGCA 2 cut(s) 179, 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
Hsp92II CATG 2 cut(s) 53, 58
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 2 cut(s) 96, 145
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 3 cut(s) 34, 79, 134
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 2 cut(s) 123, 231
MaeI CTAG 1 cut(s) 122
MalI GATC 2 cut(s) 98, 147
MboI GATC 2 cut(s) 96, 145
MboII GAAGA 2 cut(s) 79, 101
MflI RGATCY 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 3 cut(s) 82, 183, 263
MnlI CCTC 4 cut(s) 166, 243, 264, 315
MseI TTAA 3 cut(s) 104, 246, 319
MspA1I CMGCKG 1 cut(s) 137
Mva1269I GAATGC 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 2 cut(s) 96, 145
NlaIII CATG 2 cut(s) 53, 58
NlaIV GGNNCC 1 cut(s) 34
NspI RCATGY 1 cut(s) 58
PagI TCATGA 1 cut(s) 49
PciI ACATGT 1 cut(s) 54
PctI GAATGC 1 cut(s) 285
PkrI GCNGC 1 cut(s) 139
PscI ACATGT 1 cut(s) 54
Psp124BI GAGCTC 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 33
PsuI RGATCY 1 cut(s) 96
PvuII CAGCTG 1 cut(s) 137
SacI GAGCTC 1 cut(s) 234
SaqAI TTAA 3 cut(s) 104, 246, 319
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 2 cut(s) 96, 145
Sau96I GGNCC 1 cut(s) 33
SduI GDGCHC 1 cut(s) 234
SetI ASST 8 cut(s) 82, 129, 139, 234, 246, 262, 275, 307
SfaNI GCATC 2 cut(s) 123, 231
SinI GGWCC 1 cut(s) 33
Sse9I AATT 3 cut(s) 82, 183, 263
SspMI CTAG 1 cut(s) 122
SstI GAGCTC 1 cut(s) 234
TasI AATT 3 cut(s) 82, 183, 263
Tru1I TTAA 3 cut(s) 104, 246, 319
Tru9I TTAA 3 cut(s) 104, 246, 319
TseI GCWGC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 33
XceI RCATGY 1 cut(s) 58
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.