pycom15g05380

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000508
Physical Location & Seq
Forward (+)
3208338 .. 3210178
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g05380.4

Sequence Viewer

Length: 1185 bp
ATGGCGAATTCCATGAGCTTTGAAAGAAGAGAAGGAAGAGACCATTCAGAAACTAATAGCAGCTCCAATGGCTCTGATAAAGTTTACATAGAAAGGTCAACAAACTTCAAAAATTGGGTGTCCACAGAACCGAAAATTGAAGCATCTGATTCAATATTTGAGAGTCCTGACTTAACCTCTTCGATCGGTAGAAATGGTGAAGTAGTGCAGATAAACAAGCCTACAATTTTGTTTCTTGAGCGCAATGCGGCGGCTACTAAGATTCAGAAAGTTTACAGGACGTACAGGACTAGACGTACCAATGCTGCGGCAACTAGGATTCAGAAGGTTTATAAGAGTTACAGGACTAGACGAAACTTCGCAGATTGCGCTGTTGTAGTTGAGGAACTATGGTTGAAGGCCTTGGGCCTCGGAGCACGGAAACGAAGCTTAGAGGCCTTGGACATTGAGAAACACGAAACTATTGAGTCACTGCGGGCACGAACTAGGGCAAGGGCTTCTGGCCAGGCTGACAAACTAGAGCTGCAGCACTGGCTTGAATCTATTGATCCACGCCATCGGTACGGGCACAATTTAGTGTTCTACTACGATGTCTGGTGTGATTGCGACAGCAAGCAACCTTTCTTCTACTGGTTGGATATTGGTGACGGTAAAAACATAAATCTCAGTAAGTGTCCAAGGACCGATCTACAACGTCAGTGCATCAGCAATCTTGGACAACGTCAGCACAGCAGATATCGTGTACCAACTATTTCAGCAGAGTGGATATTTCTAGTCACTGGCCTCTGCCTAGAGATTTTGTCGATTGCTTTTGATCAGGCCGCCTCCCCAAGTAAGCCTCGATATGCACTATTTGGTATGACATTGGCTATTGCAGTTCTACTCATTTGCATATGGGAGGTCATTTACAAGGGTAAAAAGGAAGGAGTTGTGTTGCGGCGGTGGGGAAAGTTGTGGTGGTTTTATTATCCACGTTCCGCCCAGACTTTTGGAACTCTTCCGGACTTTTATGGATTGATTGGTAGCAGTTCGCAGTGTATTTGCTCGACGGTTCAATATGTTTGCTTCTCTCATCATGCTGACAATCCCATCAAAGTATCCCTTTGGCCTGCCATCTTTCTTGTATGCTTGGGTGCAAAAAAATTAGTCGAGAAACGAAATGAGACCCATGGACACAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

395

Amino Acids

45.3

Weight (kDa)

9.34

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AccIII TCCGGA 1 cut(s) 1000
AciI CCGC 8 cut(s) 248, 251, 308, 475, 822, 937, 940, 978
AclWI GGATC 1 cut(s) 542
AcoI YGGCCR 1 cut(s) 502
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 4 cut(s) 284, 298, 563, 744
AgsI TTSAA 7 cut(s) 23, 109, 140, 153, 397, 539, 1055
AjnI CCWGG 1 cut(s) 504
AluBI AGCT 4 cut(s) 18, 63, 429, 523
AluI AGCT 4 cut(s) 18, 63, 429, 523
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 2 cut(s) 33, 1157
AlwI GGATC 1 cut(s) 542
Aor13HI TCCGGA 1 cut(s) 1000
AoxI GGCC 7 cut(s) 399, 406, 435, 502, 781, 819, 1106
ApeKI GCWGC 4 cut(s) 60, 305, 523, 526
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 2 cut(s) 243, 371
AspS9I GGNCC 2 cut(s) 406, 681
AsuHPI GGTGA 2 cut(s) 209, 656
AvaII GGWCC 1 cut(s) 681
BaeGI GKGCMC 2 cut(s) 481, 570
BalI TGGCCA 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 4 cut(s) 72, 292, 510, 538
BccI CCATC 3 cut(s) 564, 1097, 1121
BciT130I CCWGG 1 cut(s) 506
BciVI GTATCC 1 cut(s) 1108
BclI TGATCA 1 cut(s) 814
BcoDI GTCTC 2 cut(s) 33, 1157
BfaI CTAG 7 cut(s) 291, 315, 348, 486, 518, 773, 791
BfmI CTRYAG 1 cut(s) 524
BfuI GTATCC 1 cut(s) 1108
BisI GCNGC 9 cut(s) 61, 249, 252, 306, 309, 524, 527, 822, 938
BlsI GCNGC 9 cut(s) 62, 250, 253, 307, 310, 525, 528, 823, 939
Bme1390I CCNGG 1 cut(s) 506
Bme18I GGWCC 1 cut(s) 681
BmgT120I GGNCC 2 cut(s) 406, 681
BmrFI CCNGG 1 cut(s) 506
BmsI GCATC 2 cut(s) 152, 711
BpuEI CTTGAG 1 cut(s) 257
BsaI GGTCTC 2 cut(s) 33, 1157
BsaJI CCNNGG 5 cut(s) 402, 409, 438, 677, 1168
BsaWI WCCGGW 1 cut(s) 1000
Bse1I ACTGG 3 cut(s) 536, 635, 784
Bse3DI GCAATG 1 cut(s) 250
BseAI TCCGGA 1 cut(s) 1000
BseBI CCWGG 1 cut(s) 506
BseDI CCNNGG 5 cut(s) 402, 409, 438, 677, 1168
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 679
BseNI ACTGG 3 cut(s) 536, 635, 784
BseSI GKGCMC 2 cut(s) 481, 570
BseXI GCAGC 4 cut(s) 72, 292, 510, 538
BsgI GTGCAG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 7 cut(s) 401, 408, 437, 504, 783, 821, 1108
BsiEI CGRYCG 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 418
BsiSI CCGG 1 cut(s) 1001
BsmAI GTCTC 2 cut(s) 33, 1157
BsnI GGCC 7 cut(s) 401, 408, 437, 504, 783, 821, 1108
Bso31I GGTCTC 2 cut(s) 33, 1157
Bsp1286I GDGCHC 3 cut(s) 418, 481, 570
Bsp13I TCCGGA 1 cut(s) 1000
Bsp143I GATC 4 cut(s) 183, 547, 685, 814
Bsp19I CCATGG 1 cut(s) 1168
BspACI CCGC 8 cut(s) 248, 251, 308, 475, 822, 937, 940, 978
BspANI GGCC 7 cut(s) 401, 408, 437, 504, 783, 821, 1108
BspCNI CTCAG 1 cut(s) 678
BspEI TCCGGA 1 cut(s) 1000
BspMAI CTGCAG 1 cut(s) 528
BspPI GGATC 1 cut(s) 542
BspTNI GGTCTC 2 cut(s) 33, 1157
BsrDI GCAATG 1 cut(s) 250
BsrI ACTGG 3 cut(s) 536, 635, 784
BssECI CCNNGG 5 cut(s) 402, 409, 438, 677, 1168
BssMI GATC 4 cut(s) 183, 547, 685, 814
BssT1I CCWWGG 4 cut(s) 402, 438, 677, 1168
Bst2UI CCWGG 1 cut(s) 506
Bst4CI ACNGT 2 cut(s) 650, 1051
Bst6I CTCTTC 4 cut(s) 22, 31, 184, 1002
BstC8I GCNNGC 3 cut(s) 477, 614, 1110
BstDEI CTNAG 3 cut(s) 258, 430, 665
BstDSI CCRYGG 1 cut(s) 1168
BstHHI GCGC 2 cut(s) 243, 371
BstKTI GATC 4 cut(s) 186, 550, 688, 817
BstMAI GTCTC 2 cut(s) 33, 1157
BstMBI GATC 4 cut(s) 183, 547, 685, 814
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 3 cut(s) 69, 368, 532
BstNI CCWGG 1 cut(s) 506
BstSCI CCNGG 1 cut(s) 504
BstSFI CTRYAG 1 cut(s) 524
BstSLI GKGCMC 2 cut(s) 481, 570
BstV1I GCAGC 4 cut(s) 72, 292, 510, 538
BstXI CCANNNNNNTGG 1 cut(s) 989
BsuI GTATCC 1 cut(s) 1108
BsuRI GGCC 7 cut(s) 401, 408, 437, 504, 783, 821, 1108
BtgI CCRYGG 1 cut(s) 1168
BtsI GCAGTG 2 cut(s) 470, 1040
BtsIMutI CAGTG 5 cut(s) 470, 529, 704, 777, 1040
Cac8I GCNNGC 3 cut(s) 477, 614, 1110
CfoI GCGC 2 cut(s) 243, 371
Cfr13I GGNCC 2 cut(s) 406, 681
Csp6I GTAC 4 cut(s) 283, 297, 562, 743
CviAII CATG 3 cut(s) 13, 1076, 1169
CviQI GTAC 4 cut(s) 283, 297, 562, 743
DdeI CTNAG 3 cut(s) 258, 430, 665
DpnI GATC 4 cut(s) 185, 549, 687, 816
DpnII GATC 4 cut(s) 183, 547, 685, 814
EaeI YGGCCR 1 cut(s) 502
Eam1104I CTCTTC 4 cut(s) 22, 31, 184, 1002
EarI CTCTTC 4 cut(s) 22, 31, 184, 1002
EciI GGCGGA 1 cut(s) 967
Eco130I CCWWGG 4 cut(s) 402, 438, 677, 1168
Eco147I AGGCCT 2 cut(s) 401, 437
Eco31I GGTCTC 2 cut(s) 33, 1157
Eco32I GATATC 1 cut(s) 737
Eco47I GGWCC 1 cut(s) 681
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 504
EcoRV GATATC 1 cut(s) 737
EcoT14I CCWWGG 4 cut(s) 402, 438, 677, 1168
ErhI CCWWGG 4 cut(s) 402, 438, 677, 1168
FaeI CATG 3 cut(s) 16, 1079, 1172
FalI AAGNNNNNCTT 2 cut(s) 1086, 1118
FatI CATG 3 cut(s) 12, 1075, 1168
FauI CCCGC 1 cut(s) 468
FauNDI CATATG 1 cut(s) 893
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 9 cut(s) 61, 249, 252, 306, 309, 524, 527, 822, 938
Fsp4HI GCNGC 9 cut(s) 61, 249, 252, 306, 309, 524, 527, 822, 938
FspBI CTAG 7 cut(s) 291, 315, 348, 486, 518, 773, 791
GlaI GCGC 2 cut(s) 242, 370
GluI GCNGC 9 cut(s) 61, 249, 252, 306, 309, 524, 527, 822, 938
HaeIII GGCC 7 cut(s) 401, 408, 437, 504, 783, 821, 1108
HapII CCGG 1 cut(s) 1001
HhaI GCGC 2 cut(s) 243, 371
Hin1II CATG 3 cut(s) 16, 1079, 1172
Hin6I GCGC 2 cut(s) 241, 369
HinP1I GCGC 2 cut(s) 241, 369
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 427
HinfI GANTC 6 cut(s) 149, 163, 262, 319, 467, 539
HpaII CCGG 1 cut(s) 1001
HphI GGTGA 2 cut(s) 209, 656
Hpy166II GTNNAC 5 cut(s) 85, 99, 123, 274, 743
Hpy188I TCNGA 6 cut(s) 49, 76, 148, 267, 324, 413
Hpy188III TCNNGA 4 cut(s) 167, 236, 1001, 1150
Hpy8I GTNNAC 5 cut(s) 85, 99, 123, 274, 743
Hpy99I CGWCG 1 cut(s) 1051
HpyAV CCTTC 4 cut(s) 26, 319, 391, 917
HpyCH4III ACNGT 2 cut(s) 650, 1051
HpyCH4IV ACGT 5 cut(s) 281, 295, 694, 721, 973
HpyCH4V TGCA 7 cut(s) 208, 526, 702, 848, 875, 891, 1136
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 368, 532
HpyF3I CTNAG 3 cut(s) 258, 430, 665
HpySE526I ACGT 5 cut(s) 281, 295, 694, 721, 973
Hsp92II CATG 3 cut(s) 16, 1079, 1172
HspAI GCGC 2 cut(s) 241, 369
Kpn2I TCCGGA 1 cut(s) 1000
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 4 cut(s) 183, 547, 685, 814
LmnI GCTCC 2 cut(s) 68, 413
Lsp1109I GCAGC 4 cut(s) 72, 292, 510, 538
LweI GCATC 2 cut(s) 152, 711
MaeI CTAG 7 cut(s) 291, 315, 348, 486, 518, 773, 791
MaeII ACGT 5 cut(s) 281, 295, 694, 721, 973
MaeIII GTNAC 4 cut(s) 338, 468, 644, 775
MalI GATC 4 cut(s) 185, 549, 687, 816
MboI GATC 4 cut(s) 183, 547, 685, 814
MboII GAAGA 5 cut(s) 39, 48, 171, 616, 989
MhlI GDGCHC 3 cut(s) 418, 481, 570
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 6 cut(s) 7, 112, 135, 225, 571, 1142
MluNI TGGCCA 1 cut(s) 504
MlyI GAGTC 2 cut(s) 172, 476
MmeI TCCRAC 1 cut(s) 615
MnlI CCTC 8 cut(s) 187, 376, 419, 427, 794, 835, 849, 892
Mox20I TGGCCA 1 cut(s) 504
MroI TCCGGA 1 cut(s) 1000
MscI TGGCCA 1 cut(s) 504
MseI TTAA 1 cut(s) 173
Msp20I TGGCCA 1 cut(s) 504
MspI CCGG 1 cut(s) 1001
MspR9I CCNGG 1 cut(s) 506
MvaI CCWGG 1 cut(s) 506
MwoI GCNNNNNNNGC 3 cut(s) 69, 368, 532
NcoI CCATGG 1 cut(s) 1168
NdeI CATATG 1 cut(s) 893
NdeII GATC 4 cut(s) 183, 547, 685, 814
NlaIII CATG 3 cut(s) 16, 1079, 1172
NmuCI GTSAC 3 cut(s) 468, 644, 775
PceI AGGCCT 2 cut(s) 401, 437
PfeI GAWTC 4 cut(s) 149, 262, 319, 539
PflFI GACNNNGTC 1 cut(s) 720
PkrI GCNGC 9 cut(s) 62, 250, 253, 307, 310, 525, 528, 823, 939
Ple19I CGATCG 1 cut(s) 186
PleI GAGTC 2 cut(s) 171, 475
PpsI GAGTC 2 cut(s) 171, 475
PsiI TTATAA 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 504
PspGI CCWGG 1 cut(s) 504
PspPI GGNCC 2 cut(s) 406, 681
PstI CTGCAG 1 cut(s) 528
PsyI GACNNNGTC 1 cut(s) 720
PvuI CGATCG 1 cut(s) 186
RsaI GTAC 4 cut(s) 284, 298, 563, 744
RsaNI GTAC 4 cut(s) 283, 297, 562, 743
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 9 cut(s) 61, 249, 252, 306, 309, 524, 527, 822, 938
Sau3AI GATC 4 cut(s) 183, 547, 685, 814
Sau96I GGNCC 2 cut(s) 406, 681
SchI GAGTC 2 cut(s) 172, 476
ScrFI CCNGG 1 cut(s) 506
SduI GDGCHC 3 cut(s) 418, 481, 570
SfaNI GCATC 2 cut(s) 152, 711
SfcI CTRYAG 1 cut(s) 524
SinI GGWCC 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 6 cut(s) 7, 112, 135, 225, 571, 1142
SseBI AGGCCT 2 cut(s) 401, 437
SsiI CCGC 8 cut(s) 248, 251, 308, 475, 822, 937, 940, 978
SspI AATATT 1 cut(s) 156
SspMI CTAG 7 cut(s) 291, 315, 348, 486, 518, 773, 791
StuI AGGCCT 2 cut(s) 401, 437
StyD4I CCNGG 1 cut(s) 504
StyI CCWWGG 4 cut(s) 402, 438, 677, 1168
TaaI ACNGT 2 cut(s) 650, 1051
TaiI ACGT 5 cut(s) 284, 298, 697, 724, 976
TaqI TCGA 5 cut(s) 182, 803, 841, 1046, 1149
TaqII GACCGA 1 cut(s) 698
TasI AATT 6 cut(s) 7, 112, 135, 225, 571, 1142
TauI GCSGC 5 cut(s) 251, 254, 311, 824, 940
TfiI GAWTC 4 cut(s) 149, 262, 319, 539
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 5 cut(s) 477, 536, 704, 784, 1040
TseFI GTSAC 3 cut(s) 468, 644, 775
TseI GCWGC 4 cut(s) 60, 305, 523, 526
Tsp45I GTSAC 3 cut(s) 468, 644, 775
TspGWI ACGGA 1 cut(s) 433
TspRI CASTG 5 cut(s) 477, 536, 704, 784, 1040
Tth111I GACNNNGTC 1 cut(s) 720
VpaK11BI GGWCC 1 cut(s) 681
XapI RAATTY 1 cut(s) 7
XspI CTAG 7 cut(s) 291, 315, 348, 486, 518, 773, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.