MD08G1178900.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
22051447 .. 22056899
5453 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1178900.v1.1.491

Sequence Viewer

Length: 3768 bp
ATGACATCTTTAGATTTTCATAAACTATGCCCTTTGGCTTATTGCCTTGTCTTATTCGTACAACTTCTTTCACCGCCAAGTTTTTGTGCTTTTGCTTATGCTACTTCTACTACTGAAGCAGAAGCACTTCTCATATGGAAAGCCACCTTTCAAAACCATACCCGCCTGCAAAATCTCACCTCGTGGACTTACCTACCCGCTCATACAAAAGCAGCCCCATGTTTCTGGACTGGTATTTCATGCAATGCTGTTGGAAGTGTTAGTGTGATAAACCTTACCAATTCCGGTATACAAGGTACGCTACATGAGTTTTCATTCTTGTCTTTTCCCAATCTTCAATACCTCAATCTCAGCTACAATAATCTCTTTGATGCCATTCCCGCTCAGATCAATTCCCTCTCCAAACTCATCTCACTTGATCTTTCTAACAATTGGCTCAGTGGTTCAATCCCAACATCTTTCGGTGATCTCACAAACATTAAATTTCTCTATCTCTACCGAAATAATCTTTCTAGCACAATTCCAAAAGAGATAGGGAAATTGAAATCTCTTGTGGACCTAAGATTGTCTTTTAACCAGCTCAGCTGTTCAATCCCAACATCCCTAGGTGATCTCACAAACCTTACCACTCTCTATCTCAATAATAATAATCTTTCTAGCACAATTCCTAAAGAGATAGGGAAATTGAAATCTCTTATGGACCTAGAATTGTCAGAGAATCAGCTCAGCGATTCAATCCCAACATCCCTAGGTCAGCTCACAAACCTTACCACTCTTTATCTCTATAGTAATAATCTTTCTGGCACAATTCCTAAAGAGATAGGGAAATTGAAATCTCTTTTGGACCTAAGATTGTCTTTTAACCAGCTCAGCTGTTTAATCCCAACATCCCTAGGTGATCTCACAAACCTTACCACTCTCTATCTCAATAATAATAATCTTTCTGGCACAATTCCAAAAGAGATGGGGAAATTGAAATTTCTTGTGGACCTAGAATTGTCATATAACCAGCTCAACGGTTCAATCCCAACATCCCTAGGCCAGCTCACAATCCTTACCACTCTCTATCTCTATAGTAATAATCTTACTGGCACAATTCCTAAAGAGATAGGGAAATTGAAATCTCTTTTGAAGCTAGATTTGTTTGGGAATTACCTCAATGGTTTAATCCCAAAATCCCTCTGTGATCTCACAAACCTTACCATTCTCTATCTCCATCGTAATAATCTTTCTGGCACAATTCCAAAAGAGATAGGGAAATTGAAATCTCTTGTGCACCTAGGATTATCTTATAACCAGCTCAACGGTTCAATCCCAACATTCCTCGGTGATCTCACAAACCTTACCACTCTCTATCTCAATAATAATAATCTTTCTGGCACAATTCCAAAAGAGATGGGGAAATTGAAATTTCTTGTGGACCTAGAATTGTCTTATAACCAACTCAACGGTTCAATCCCAACATCTCTTGGTGATTTCACAAACCTCGCCACTCTTTATCTCAATAATAATAATCTTTCTAGCACAATTCCTAATGAGTTAGGGAAATTAAAATCTCTTGTGAACCTACAATTGTCTTATAATCAGCTCAGTGATTCAATTCCCGCTTCAATAGGTAATCTAGTCAACTTGAAAATCTTACACCTAACAGATAACCAACTTTCTGGCTCCATCCCCTCAGAGATAAAGAATTTGAAGAAGTTGACTAAATTGCAATTGCATAATAACCAATTAATAGGTTATTTGCCCCAAAATATTTGCTGTAGTGGACAACTCCAAAACCTTTCAGTGGGCAATAACCATTTGACAGGTCCAATCCCCAAAAGCTTGAAAACATGCAAGAGCTTAGTTAGAGTTCGTCTTGAAGGGAACCAATTCACAGGCAATATATCAAAAAACTTTGGTGTTTATCCAAATCTTGATTTCATAGATATGAGCCACAATAAGTTTTATGGTGAAATCTCACAAAAATGGGGACAATGTGCACAATTAGAAACCTTACTAATTGTGGGAAACAACCTTATTGGTAGCATACCTCCTGAGATTGTCAATGCTCATAAAATCCATAGACTTGACCTTTCTTCAAATCACTTAGTTGGGGCCATTCCAAAGGGATTCGGGAGAATGACTTCTTTGCAGAAGTTGATGCTAAATGGAAATCAACTTTCAGGTTGTATACCTTCAGAATTTGGATTACTAGTTGATCTTGAATACCTTGACTTGTCATCAAACAAATTCAATGGGTCAATTGCAAGCACTTTAGGCAACTTTCTCAAACTGTACCATCTGAATTTGAGCAACAATCATTTTTCCCATGGAATTCCATTGAAGTTGGAAAAGTTAGTTATGTTGAACGAACTTGATTTGAGTTGCAACTCACTTAAAGGTAGCATACCGCCAGAAATCAACAATATGGAGAGTTTGGAGACACTCAATCTTTCTCACAACAATCTTTCGGGTTTCATACCACCAAGCTTTGAAGGCATGCACGGCTTGTCGTACGTGGATGTATCTTACAATGAATTGGAAGGCCCCATTCCCAACAACAGTGCATTTCGACAAGCTCTGTACTTACAAGGGAATAAAGGATTGTGCGGCAACGTCGAAGGTTTGCAACCTTGCACACATGGCCCAAGAAAGGATTGCAAATGGGTATTTGGAATCACATTCTCCTTTATAGCAGCAATTTTACTTCTTTCTGCTTTCTTTACAATTAAATTTGTAGTGGAAAGAAAGGAGAAGCATCCAGATAAAGCAGAAAAACACTTGCATGAAGAAATATCGTTTTCAGTTTTAAATTTTGATGGAAAGTCAATGTATGAGGAAATCATAAGGGTGACAGAAAATTTTGATTCCACATATTGCATCGGGAGCGGAGGACAAGGAAGCGTCTACAGAGCAAATTTGTCAAGTGACAACATAGTGGCTGTGAAAAAATTACATCAATTGTGGGATGGCGAGAAGAATTTGGAGATGGCATTCTTGAACGAAATAAGGGCACTTTCAGAGATAAGACACCGAAATATCGTGAAGCTTTATGGTTTCTGTTCACACCATCAACACTCGTTCTTGGTGTACAAGTTTGTTGAAAGAGGTAGCTTGGCTGCAAATTTGAGTAAAGATGAAGAAGCTAAAGAAATAGGGTGGAGAAAAAGGGTGAATATTGTTAAAGGTGTAGCTCATGCCTTGGCATACATGCACCACGATTGTGTGCCACCAATTGTGCACCAAGACATATCAAGCAAGAACATTTTGTTGGATTCTGAATATGAGGCCTTTGTTTCAGACTTTGGCATTGCTATGTTTTTGAATCCAGACTCAACTACTTGGACTGCCGTTGCAGGCACATATGGGTATGTCGCACCAGAACTTGCATATACCATGAAAGTGAACGAAAAGTGCGATGTTTATAGCTTTGGAGTGGTTGCATTGGAAACAATCATGGGAAGGCATCCCGGAGATTTTTTCTCGTCTTTCTCATTGGTGCCTTCTTCATCCACGTCATCATCAGCATCTACATTACCACCCCATCAAATGTCAATTGTGGATGTTTTGGACCAACGCATTTTGCCTCCAACACATCAAGAAGCAGGAGAAGTACTCTCTATTGTGAAGATTGTGTTTTCATGCTTGAATCCCAGTCCGCACTCTCGCCCTACAATGAAACAAGTTTCTCAACTCCTCTCAACTCATAAGATGCATTTGTCGAAGCCATTATGTATGATAACCTGCGGTGAATTGCTTGCTATTGATCCTTTGACGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1256

Amino Acids

138.67

Weight (kDa)

7.37

Isoelectric Point (pI)

24.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 90 - 216 6e-13 Leucine-rich repeat region
LRR_8 PF13855 110 - 170 2.5e-08 Leucine rich repeat
LRR_8 PF13855 135 - 194 2.1e-06 Leucine rich repeat
LRR_8 PF13855 206 - 266 2.6e-08 Leucine rich repeat
LRR_14 PF23598 213 - 311 2.1e-11 Leucine-rich repeat region
LRR_14 PF23598 364 - 454 1.9e-10 Leucine-rich repeat region
LRR_8 PF13855 375 - 434 6.9e-07 Leucine rich repeat
LRR_14 PF23598 442 - 550 1.3e-10 Leucine-rich repeat region
LRR_14 PF23598 536 - 620 9.5e-07 Leucine-rich repeat region
LRR_14 PF23598 642 - 769 7e-06 Leucine-rich repeat region
LRR_8 PF13855 663 - 722 8.7e-07 Leucine rich repeat
LRR_8 PF13855 688 - 746 1.6e-09 Leucine rich repeat
LRR_8 PF13855 784 - 842 4.4e-10 Leucine rich repeat
Pkinase PF00069 955 - 1226 1.5e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 956 - 1227 6.2e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08850 AT4G08850
fragaria_vesca FvH4_2g07670 FvH4_2g07680 FvH4_2g20750 FvH4_2g20750 FvH4_2g20790 FvH4_3g14180 FvH4_3g14180 FvH4_3g14230 FvH4_3g14330 FvH4_3g14340 FvH4_3g14340 FvH4_3g14360 FvH4_3g14370 FvH4_3g14371 FvH4_3g16410 FvH4_4g04540 FvH4_4g33281 FvH4_5g24120 FvH4_5g36290 FvH4_5g37480 FvH4_5g37490 FvH4_5g37510 FvH4_5g37510 FvH4_5g37520 FvH4_5g37560 FvH4_5g37580 FvH4_5g37590 FvH4_5g37590 FvH4_5g37590 FvH4_5g37790 FvH4_5g37800 FvH4_6g38120
malus_domestica MD00G1009600.v1.1 MD00G1061200.v1.1 MD00G1123900.v1.1 MD00G1124200.v1.1 MD00G1124500.v1.1 MD00G1124700.v1.1 MD00G1170400.v1.1 MD00G1170700.v1.1 MD01G1002100.v1.1 MD03G1036100.v1.1 MD04G1006600.v1.1 MD04G1006800.v1.1 MD04G1039700.v1.1 MD04G1039900.v1.1 MD05G1189800.v1.1 MD05G1190000.v1.1 MD05G1190200.v1.1 MD05G1190400.v1.1 MD05G1190600.v1.1 MD05G1190700.v1.1 MD05G1190800.v1.1 MD05G1190900.v1.1 MD05G1191200.v1.1 MD05G1191500.v1.1 MD08G1025100.v1.1 MD08G1025500.v1.1 MD08G1094500.v1.1 MD08G1094600.v1.1 MD08G1175000.v1.1 MD08G1175100.v1.1 MD08G1175200.v1.1 MD08G1175300.v1.1 MD08G1175400.v1.1 MD08G1178900.v1.1 MD08G1179000.v1.1 MD08G1179200.v1.1 MD09G1153000.v1.1 MD09G1153100.v1.1 MD09G1153200.v1.1 MD09G1153300.v1.1 MD09G1153400.v1.1 MD09G1153700.v1.1 MD09G1153800.v1.1 MD10G1178100.v1.1 MD10G1178200.v1.1 MD10G1214300.v1.1 MD10G1214500.v1.1 MD10G1214600.v1.1 MD10G1215200.v1.1 MD11G1221700.v1.1 MD12G1229500.v1.1 MD12G1229600.v1.1 MD12G1229700.v1.1 MD13G1018200.v1.1 MD15G1367500.v1.1 MD15G1367600.v1.1 MD15G1367700.v1.1 MD15G1367800.v1.1 MD15G1437200.v1.1 MD15G1437400.v1.1 MD17G1140300.v1.1 MD17G1140400.v1.1 MD17G1153200.v1.1
prunus_persica Prupe.1G510800_v2.0.a1 Prupe.1G513300_v2.0.a1 Prupe.1G513400_v2.0.a1 Prupe.1G514100_v2.0.a1 Prupe.1G514200_v2.0.a1 Prupe.1G515300_v2.0.a1 Prupe.1G515500_v2.0.a1 Prupe.1G515600_v2.0.a1 Prupe.1G515700_v2.0.a1 Prupe.1G515700_v2.0.a1 Prupe.1G515700_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G516000_v2.0.a1 Prupe.2G064900_v2.0.a1 Prupe.3G115800_v2.0.a1 Prupe.3G115800_v2.0.a1 Prupe.3G115800_v2.0.a1 Prupe.3G115900_v2.0.a1 Prupe.3G116000_v2.0.a1 Prupe.3G157900_v2.0.a1 Prupe.3G171200_v2.0.a1 Prupe.3G171300_v2.0.a1 Prupe.4G128800_v2.0.a1 Prupe.4G129000_v2.0.a1 Prupe.4G268100_v2.0.a1 Prupe.4G283700_v2.0.a1 Prupe.6G161700_v2.0.a1 Prupe.6G161700_v2.0.a1 Prupe.6G161700_v2.0.a1 Prupe.7G014300_v2.0.a1 Prupe.7G014400_v2.0.a1 Prupe.8G060800_v2.0.a1 Prupe.8G061100_v2.0.a1 Prupe.8G217000_v2.0.a1 Prupe.8G217100_v2.0.a1 Prupe.8G217100_v2.0.a1 Prupe.8G217200_v2.0.a1 Prupe.8G217300_v2.0.a1 Prupe.8G217400_v2.0.a1 Prupe.8G217400_v2.0.a1 Prupe.8G217600_v2.0.a1 Prupe.8G217700_v2.0.a1 Prupe.8G226900_v2.0.a1
pyrus_communis pycom04g03280 pycom04g03330 pycom05g17120 pycom05g17140 pycom05g17490 pycom05g17510 pycom05g17540 pycom05g17550 pycom05g17570 pycom05g17600 pycom05g17610 pycom05g17640 pycom05g17720 pycom05g17730 pycom05g17780 pycom05g17790 pycom05g17820 pycom08g15350 pycom08g15540 pycom08g15550 pycom08g15560 pycom09g07250 pycom09g07260 pycom10g02200 pycom10g15400 pycom10g18060 pycom10g18090 pycom10g18100 pycom10g18130 pycom10g18180 pycom10g18200 pycom13g01560 pycom13g14430 pycom14g10720 pycom14g10740 pycom15g32940 pycom15g32950 pycom15g32960 pycom15g32970 pycom15g38570 pycom15g38580 pycom17g13340 pycom17g13350 pycom17g13360
rosa_chinensis RchiOBHm_Chr0c16g0499671 RchiOBHm_Chr0c16g0499681 RchiOBHm_Chr0c16g0499691 RchiOBHm_Chr0c16g0499701 RchiOBHm_Chr0c16g0499741 RchiOBHm_Chr0c16g0499761 RchiOBHm_Chr0c16g0499771 RchiOBHm_Chr0c16g0499801 RchiOBHm_Chr0c16g0499831 RchiOBHm_Chr0c16g0499841 RchiOBHm_Chr0c16g0499881 RchiOBHm_Chr0c16g0499891 RchiOBHm_Chr0c16g0499931 RchiOBHm_Chr2g0151181 RchiOBHm_Chr2g0151221 RchiOBHm_Chr2g0151291 RchiOBHm_Chr2g0151311 RchiOBHm_Chr2g0151331 RchiOBHm_Chr2g0151341 RchiOBHm_Chr3g0483131 RchiOBHm_Chr3g0491341 RchiOBHm_Chr3g0493861 RchiOBHm_Chr3g0493881 RchiOBHm_Chr3g0493891 RchiOBHm_Chr4g0403001 RchiOBHm_Chr4g0409861 RchiOBHm_Chr4g0409901 RchiOBHm_Chr4g0409921 RchiOBHm_Chr4g0409931 RchiOBHm_Chr4g0412541 RchiOBHm_Chr4g0442461 RchiOBHm_Chr5g0021681 RchiOBHm_Chr5g0021711 RchiOBHm_Chr5g0023521 RchiOBHm_Chr5g0023721 RchiOBHm_Chr5g0023981 RchiOBHm_Chr5g0024241 RchiOBHm_Chr5g0033191 RchiOBHm_Chr5g0070881 RchiOBHm_Chr5g0070901 RchiOBHm_Chr6g0286931 RchiOBHm_Chr6g0286941 RchiOBHm_Chr6g0286951 RchiOBHm_Chr6g0287011 RchiOBHm_Chr6g0287031 RchiOBHm_Chr6g0287041 RchiOBHm_Chr6g0287061 RchiOBHm_Chr6g0287071 RchiOBHm_Chr6g0287081 RchiOBHm_Chr6g0287091 RchiOBHm_Chr6g0287101 RchiOBHm_Chr6g0287141 RchiOBHm_Chr6g0287151 RchiOBHm_Chr6g0287171 RchiOBHm_Chr6g0311671 RchiOBHm_Chr7g0213681 RchiOBHm_Chr7g0213751 RchiOBHm_Chr7g0213791 RchiOBHm_Chr7g0213801 RchiOBHm_Chr7g0221461 RchiOBHm_Chr7g0221481 RchiOBHm_Chr7g0221491 RchiOBHm_Chr7g0221501 RchiOBHm_Chr7g0221511 RchiOBHm_Chr7g0233271 RchiOBHm_Chr7g0238311 RchiOBHm_Chr7g0239091 RchiOBHm_Chr7g0239121 RchiOBHm_Chr7g0239131 RchiOBHm_Chr7g0239151 RchiOBHm_Chr7g0239161 RchiOBHm_Chr7g0239171 RchiOBHm_Chr7g0239211 RchiOBHm_Chr7g0239221 RchiOBHm_Chr7g0239231 RchiOBHm_Chr7g0239251 RchiOBHm_Chr7g0239641 RchiOBHm_Chr7g0239661 RchiOBHm_Chr7g0239771 RchiOBHm_Chr7g0239791
rosa_laevigata RLG00000000731 RLG00000000733 RLG00000000736 RLG00000000743 RLG00000000744 RLG00000000767 RLG00000000768 RLG00000000769 RLG00000000771 RLG00000000772 RLG00000000773 RLG00000000774 RLG00000000776 RLG00000000777 RLG00000000778 RLG00000000779 RLG00000000780 RLG00000000781 RLG00000000783 RLG00000000920 RLG00000000922 RLG00000000926 RLG00000000930 RLG00000001280 RLG00000001281 RLG00000002778 RLG00000002783 RLG00000002784 RLG00000002789 RLG00000002791 RLG00000002793 RLG00000006009 RLG00000008276 RLG00000008277 RLG00000008513 RLG00000008514 RLG00000008516 RLG00000008517 RLG00000008518 RLG00000008519 RLG00000012519 RLG00000012520 RLG00000012521 RLG00000012523 RLG00000012525 RLG00000012530 RLG00000013262 RLG00000013263 RLG00000013859 RLG00000013861 RLG00000014074 RLG00000018176 RLG00000019276 RLG00000020539 RLG00000020542 RLG00000022691 RLG00000029077 RLG00000029178 RLG00000029180 RLG00000029181 RLG00000032621 RLG00000032622 RLG00000032723 RLG00000032731 RLG00000032753 RLG00000032783 RLG00000032784 RLG00000032786 RLG00000033018 RLG00000033277 RLG00000033342 RLG00000033343 RLG00000034125 RLG00000036163 RLG00000036167 RLG00000036168
rosa_multiflora Rmu_co8056540.1_g000001 Rmu_co8091752.1_g000001 Rmu_co8279983.1_g000001 Rmu_co8282085.1_g000001 Rmu_co8310275.1_g000001 Rmu_co8364577.1_g000001 Rmu_co8381009.1_g000001 Rmu_co8432097.1_g000001 Rmu_sc0000063.1_g000009 Rmu_sc0000063.1_g000013 Rmu_sc0000063.1_g000016 Rmu_sc0000063.1_g000035 Rmu_sc0000063.1_g000036 Rmu_sc0000063.1_g000041 Rmu_sc0000063.1_g000045 Rmu_sc0000101.1_g000007 Rmu_sc0000101.1_g000010 Rmu_sc0000101.1_g000012 Rmu_sc0000101.1_g000016 Rmu_sc0000101.1_g000018 Rmu_sc0000101.1_g000021 Rmu_sc0000328.1_g000017 Rmu_sc0000721.1_g000009 Rmu_sc0000721.1_g000018 Rmu_sc0000977.1_g000012 Rmu_sc0000987.1_g000005 Rmu_sc0000987.1_g000006 Rmu_sc0000987.1_g000007 Rmu_sc0000987.1_g000019 Rmu_sc0001102.1_g000004 Rmu_sc0001175.1_g000005 Rmu_sc0001175.1_g000006 Rmu_sc0001371.1_g000018 Rmu_sc0002298.1_g000006 Rmu_sc0002298.1_g000016 Rmu_sc0002344.1_g000016 Rmu_sc0002516.1_g000002 Rmu_sc0002516.1_g000006 Rmu_sc0002520.1_g000004 Rmu_sc0002942.1_g000023 Rmu_sc0002942.1_g000045 Rmu_sc0002944.1_g000005 Rmu_sc0002944.1_g000006 Rmu_sc0002944.1_g000008 Rmu_sc0002973.1_g000004 Rmu_sc0003006.1_g000017 Rmu_sc0003207.1_g000002 Rmu_sc0003207.1_g000006 Rmu_sc0003207.1_g000021 Rmu_sc0003207.1_g000027 Rmu_sc0003207.1_g000028 Rmu_sc0003207.1_g000029 Rmu_sc0003207.1_g000033 Rmu_sc0003207.1_g000034 Rmu_sc0003314.1_g000037 Rmu_sc0003314.1_g000038 Rmu_sc0003314.1_g000044 Rmu_sc0003500.1_g000046 Rmu_sc0003622.1_g000006 Rmu_sc0003895.1_g000027 Rmu_sc0004175.1_g000002 Rmu_sc0004549.1_g000010 Rmu_sc0004549.1_g000011 Rmu_sc0004605.1_g000003 Rmu_sc0004605.1_g000005 Rmu_sc0004605.1_g000018 Rmu_sc0005102.1_g000002 Rmu_sc0005297.1_g000008 Rmu_sc0005297.1_g000020 Rmu_sc0005494.1_g000004 Rmu_sc0005494.1_g000005 Rmu_sc0005571.1_g000023 Rmu_sc0005837.1_g000008 Rmu_sc0005837.1_g000009 Rmu_sc0005913.1_g000016 Rmu_sc0005913.1_g000023 Rmu_sc0005970.1_g000007 Rmu_sc0005970.1_g000008 Rmu_sc0005979.1_g000009 Rmu_sc0005979.1_g000010 Rmu_sc0005979.1_g000013 Rmu_sc0005979.1_g000022 Rmu_sc0005979.1_g000023 Rmu_sc0005979.1_g000029 Rmu_sc0006380.1_g000005 Rmu_sc0006413.1_g000017 Rmu_sc0006522.1_g000001 Rmu_sc0006522.1_g000012 Rmu_sc0006522.1_g000024 Rmu_sc0006522.1_g000026 Rmu_sc0006624.1_g000004 Rmu_sc0006695.1_g000084 Rmu_sc0006847.1_g000020 Rmu_sc0007340.1_g000001 Rmu_sc0007340.1_g000002 Rmu_sc0007340.1_g000005 Rmu_sc0007802.1_g000021 Rmu_sc0007937.1_g000001 Rmu_sc0007959.1_g000001 Rmu_sc0008101.1_g000016 Rmu_sc0008314.1_g000008 Rmu_sc0008554.1_g000003 Rmu_sc0009418.1_g000006 Rmu_sc0012344.1_g000011 Rmu_sc0012454.1_g000001 Rmu_sc0014162.1_g000019 Rmu_sc0014703.1_g000001 Rmu_sc0016863.1_g000001 Rmu_sc0019500.1_g000002 Rmu_sc0019500.1_g000003 Rmu_sc0022062.1_g000001 Rmu_sc0023638.1_g000002 Rmu_sc0023638.1_g000003 Rmu_sc0023645.1_g000001 Rmu_sc0030525.1_g000001 Rmu_sc0033158.1_g000001 Rmu_sc0033302.1_g000001 Rmu_sc0035631.1_g000001 Rmu_sc0040354.1_g000001 Rmu_sc0040355.1_g000001 Rmu_sc0041511.1_g000001 Rmu_sc0042599.1_g000002 Rmu_ssc0000204.1_g000059 Rmu_ssc0000261.1_g000001 Rmu_ssc0000261.1_g000002 Rmu_ssc0000261.1_g000006
rosa_roxburghii Rroxscaffold_1G00010300 Rroxscaffold_1G00054930 Rroxscaffold_1G00055750 Rroxscaffold_1G00056040 Rroxscaffold_1G00057030 Rroxscaffold_2G00096550 Rroxscaffold_2G00096670 Rroxscaffold_3G00221110 Rroxscaffold_3G00221130 Rroxscaffold_3G00221230 Rroxscaffold_3G00221240 Rroxscaffold_3G00221260 Rroxscaffold_3G00223130 Rroxscaffold_3G00245700 Rroxscaffold_3G00275530 Rroxscaffold_5G00354370 Rroxscaffold_5G00354380 Rroxscaffold_5G00354410 Rroxscaffold_7G00181690 Rroxscaffold_7G00181700 Rroxscaffold_7G00181740 Rroxscaffold_7G00181770 Rroxscaffold_7G00181860
rosa_rugosa Rorug01G0355500 Rorug02G0425400 Rorug03G0204400 Rorug03G0211300 Rorug03G0259200 Rorug04G0080200 Rorug04G0097500 Rorug04G0097500 Rorug04G0097900 Rorug04G0098000 Rorug04G0099200 Rorug04G0099300 Rorug05G0067900 Rorug05G0067900 Rorug05G0068200 Rorug05G0068400 Rorug05G0068600 Rorug05G0068700 Rorug05G0080500 Rorug05G0082700 Rorug05G0082800 Rorug05G0098600 Rorug05G0098600 Rorug05G0098700 Rorug05G0137400 Rorug05G0137500 Rorug05G0137600 Rorug06G0185200 Rorug06G0185200 Rorug06G0185400 Rorug06G0185400 Rorug06G0185600 Rorug06G0185700 Rorug06G0185700 Rorug07G0144000 Rorug07G0144100 Rorug07G0144300 Rorug07G0144400 Rorug07G0144600 Rorug07G0144600 Rorug07G0279700 Rorug07G0311200 Rorug07G0325900 Rorug07G0326000 Rorug07G0326000 Rorug07G0326000 Rorug07G0326100 Rorug07G0326500.1 Rorug07G0326700 Rorug07G0326800 Rorug07G0326900 Rorug07G0326900 Rorug07G0327100 Rorug07G0327100 Rorug07G0327100 Rorug07G0328700 Rorug07G0328800 Rorug07G0329100 Rorug07G0329200 Rorug07G0329300
rosa_samantha Rh1DG123500 Rh2AG486000 Rh2AG486200 Rh2AG486400 Rh2AG486500 Rh2BG498700 Rh3AG298100 Rh3AG298200 Rh4DG153100 Rh4DG399800 Rh5DG168400 Rh5DG172600 Rh6AG297000 Rh6AG297100 Rh6BG301500 Rh6BG301600 Rh6BG301700 Rh6BG302200 Rh6CG042300 Rh7CG497700 Rh7CG497800 Rh7DG424000 Rh7DG465300 Rh7DG465400 Rh7DG465500 Rh7DG465600 Rh7DG465900 Rh7DG466100 Rh7DG466200 Rh7DG466300 Rh7DG468400 Rh7DG468900 Rh7DG469100 Rh7DG469300
rosa_wichuraiana Rw0G000510 Rw0G004040 Rw0G014250 Rw0G015580 Rw2G039810 Rw2G040200 Rw2G040260 Rw3G022850 Rw3G026300 Rw4G004980 Rw4G009400 Rw4G013080 Rw4G033940 Rw5G015020 Rw5G015150 Rw5G015230 Rw5G015470 Rw5G017590 Rw5G020220 Rw5G020970 Rw5G043210 Rw6G012640 Rw6G012790 Rw6G025560 Rw6G025620 Rw6G025660 Rw6G025670 Rw7G023900 Rw7G035820 Rw7G038650 Rw7G038660 Rw7G038770 Rw7G040030 Rw7G040040 Rw7G040050 Rw7G040060 Rw7G040070 Rw7G040080 Rw7G040150 Rw7G040160 Rw7G040170 Rw7G040190 Rw7G040200 Rw7G040210 Rw7G040410 Rw7G040460 Rw7G040510 Rw7G040530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1293, 1437, 1581
Acc36I ACCTGC 1 cut(s) 3737
AccB1I GGYRCC 1 cut(s) 3484
AccBSI CCGCTC 3 cut(s) 200, 383, 2874
AccI GTMKAC 3 cut(s) 289, 2176, 2892
AclWI GGATC 1 cut(s) 3746
AcuI CTGAAG 2 cut(s) 135, 2166
AdeI CACNNNGTG 1 cut(s) 183
AfaI GTAC 7 cut(s) 60, 298, 2282, 2501, 2570, 3077, 3600
AfiI CCNNNNNNNGG 2 cut(s) 1789, 2638
AhlI ACTAGT 1 cut(s) 2197
AjiI CACGTC 1 cut(s) 3501
AjuI GAANNNNNNNTTGG 4 cut(s) 824, 856, 3239, 3271
AleI CACNNNNGTG 1 cut(s) 3207
Alw21I GWGCWC 3 cut(s) 1278, 1987, 3228
Alw26I GTCTC 1 cut(s) 2420
Alw44I GTGCAC 3 cut(s) 1274, 1983, 3224
AlwI GGATC 1 cut(s) 3746
AoxI GGCC 6 cut(s) 1039, 2100, 2530, 2629, 3273, 3762
ApaLI GTGCAC 3 cut(s) 1274, 1983, 3224
ApeKI GCWGC 3 cut(s) 212, 2681, 3104
AseI ATTAAT 1 cut(s) 1733
Asp700I GAANNNNTTC 3 cut(s) 126, 1874, 2128
AspA2I CCTAGG 5 cut(s) 604, 748, 892, 1036, 1279
AsuC2I CCSGG 1 cut(s) 3456
AvaII GGWCC 7 cut(s) 556, 700, 844, 988, 1420, 1811, 3556
AvrII CCTAGG 5 cut(s) 604, 748, 892, 1036, 1279
BaeGI GKGCMC 4 cut(s) 1278, 1987, 3001, 3228
BanI GGYRCC 1 cut(s) 3484
BauI CACGAG 1 cut(s) 181
Bbv12I GWGCWC 3 cut(s) 1278, 1987, 3228
BbvI GCAGC 3 cut(s) 224, 2693, 3091
BceAI ACGGC 2 cut(s) 2506, 3320
BcnI CCSGG 1 cut(s) 3456
BcoDI GTCTC 1 cut(s) 2420
BcuI ACTAGT 1 cut(s) 2197
BfmI CTRYAG 4 cut(s) 784, 1072, 1762, 2893
BfuAI ACCTGC 1 cut(s) 3737
BisI GCNGC 4 cut(s) 213, 2596, 2682, 3105
BlnI CCTAGG 5 cut(s) 604, 748, 892, 1036, 1279
BlpI GCTNAGC 3 cut(s) 581, 725, 869
BlsI GCNGC 4 cut(s) 214, 2597, 2683, 3106
BmcAI AGTACT 1 cut(s) 3600
Bme1390I CCNGG 1 cut(s) 3456
Bme18I GGWCC 7 cut(s) 556, 700, 844, 988, 1420, 1811, 3556
BmgBI CACGTC 1 cut(s) 3501
BmiI GGNNCC 5 cut(s) 1669, 1871, 2101, 2533, 3486
BmrFI CCNGG 1 cut(s) 3456
BmrI ACTGGG 1 cut(s) 3633
BmsI GCATC 7 cut(s) 361, 2136, 2752, 2874, 3460, 3521, 3687
BmuI ACTGGG 1 cut(s) 3633
BplI GAGNNNNNCTC 2 cut(s) 3585, 3617
Bpu1102I GCTNAGC 3 cut(s) 581, 725, 869
BpuMI CCSGG 1 cut(s) 3456
BsaAI YACGTR 1 cut(s) 2503
BsaJI CCNNGG 8 cut(s) 604, 748, 892, 1036, 1279, 1324, 2314, 3186
BsaWI WCCGGW 1 cut(s) 284
Bsc4I CCNNNNNNNGG 2 cut(s) 1789, 2638
Bse1I ACTGG 3 cut(s) 235, 1093, 3639
Bse3DI GCAATG 2 cut(s) 250, 3294
BseDI CCNNGG 8 cut(s) 604, 748, 892, 1036, 1279, 1324, 2314, 3186
BseLI CCNNNNNNNGG 2 cut(s) 1789, 2638
BseMI GCAATG 2 cut(s) 250, 3294
BseMII CTCAG 9 cut(s) 364, 398, 451, 595, 739, 883, 1603, 1692, 2031
BseNI ACTGG 3 cut(s) 235, 1093, 3639
BseRI GAGGAG 1 cut(s) 3671
BseSI GKGCMC 4 cut(s) 1278, 1987, 3001, 3228
BseXI GCAGC 3 cut(s) 224, 2693, 3091
BshFI GGCC 6 cut(s) 1041, 2102, 2532, 2631, 3275, 3764
BshNI GGYRCC 1 cut(s) 3484
BsiHKAI GWGCWC 3 cut(s) 1278, 1987, 3228
BsiSI CCGG 2 cut(s) 285, 3456
BsiWI CGTACG 1 cut(s) 2499
BslFI GGGAC 1 cut(s) 1989
BslI CCNNNNNNNGG 2 cut(s) 1789, 2638
BsmAI GTCTC 1 cut(s) 2420
BsmFI GGGAC 1 cut(s) 1989
BsmI GAATGC 1 cut(s) 2978
BsnI GGCC 6 cut(s) 1041, 2102, 2532, 2631, 3275, 3764
Bsp1286I GDGCHC 4 cut(s) 1278, 1987, 3001, 3228
Bsp1407I TGTACA 1 cut(s) 3075
Bsp143I GATC 9 cut(s) 387, 418, 466, 610, 898, 1186, 1330, 2203, 3751
Bsp1720I GCTNAGC 3 cut(s) 581, 725, 869
Bsp19I CCATGG 1 cut(s) 2314
BspANI GGCC 6 cut(s) 1041, 2102, 2532, 2631, 3275, 3764
BspCNI CTCAG 9 cut(s) 363, 397, 450, 594, 738, 882, 1602, 1691, 2032
BspLI GGNNCC 5 cut(s) 1669, 1871, 2101, 2533, 3486
BspMI ACCTGC 1 cut(s) 3737
BspPI GGATC 1 cut(s) 3746
BspT107I GGYRCC 1 cut(s) 3484
BsrBI CCGCTC 3 cut(s) 200, 383, 2874
BsrDI GCAATG 2 cut(s) 250, 3294
BsrGI TGTACA 1 cut(s) 3075
BsrI ACTGG 3 cut(s) 235, 1093, 3639
BssECI CCNNGG 8 cut(s) 604, 748, 892, 1036, 1279, 1324, 2314, 3186
BssMI GATC 9 cut(s) 387, 418, 466, 610, 898, 1186, 1330, 2203, 3751
BssNAI GTATAC 2 cut(s) 290, 2177
BssSI CACGAG 1 cut(s) 181
BssT1I CCWWGG 7 cut(s) 604, 748, 892, 1036, 1279, 2314, 3186
Bst1107I GTATAC 2 cut(s) 290, 2177
Bst2BI CACGAG 1 cut(s) 181
Bst4CI ACNGT 5 cut(s) 1019, 1307, 1451, 2280, 2549
BstAUI TGTACA 1 cut(s) 3075
BstBAI YACGTR 1 cut(s) 2503
BstC8I GCNNGC 6 cut(s) 167, 1043, 2254, 2486, 3343, 3744
BstDSI CCRYGG 1 cut(s) 2314
BstKTI GATC 9 cut(s) 390, 421, 469, 613, 901, 1189, 1333, 2206, 3754
BstMAI GTCTC 1 cut(s) 2420
BstMBI GATC 9 cut(s) 387, 418, 466, 610, 898, 1186, 1330, 2203, 3751
BstMWI GCNNNNNNNGC 6 cut(s) 380, 2262, 2481, 2490, 2628, 2871
BstNSI RCATGY 3 cut(s) 1839, 2488, 3199
BstSCI CCNGG 1 cut(s) 3454
BstSFI CTRYAG 4 cut(s) 784, 1072, 1762, 2893
BstSLI GKGCMC 4 cut(s) 1278, 1987, 3001, 3228
BstV1I GCAGC 3 cut(s) 224, 2693, 3091
BstXI CCANNNNNNTGG 2 cut(s) 225, 1664
BstZ17I GTATAC 2 cut(s) 290, 2177
BsuRI GGCC 6 cut(s) 1041, 2102, 2532, 2631, 3275, 3764
BtgI CCRYGG 1 cut(s) 2314
BtgZI GCGATG 1 cut(s) 3417
BtrI CACGTC 1 cut(s) 3501
BtsIMutI CAGTG 4 cut(s) 445, 1597, 1794, 2554
BveI ACCTGC 1 cut(s) 3737
Cac8I GCNNGC 6 cut(s) 167, 1043, 2254, 2486, 3343, 3744
CseI GACGC 1 cut(s) 2878
Csp6I GTAC 7 cut(s) 59, 297, 2281, 2500, 2569, 3076, 3599
CviQI GTAC 7 cut(s) 59, 297, 2281, 2500, 2569, 3076, 3599
DpnI GATC 9 cut(s) 389, 420, 468, 612, 900, 1188, 1332, 2205, 3753
DpnII GATC 9 cut(s) 387, 418, 466, 610, 898, 1186, 1330, 2203, 3751
DraI TTTAAA 1 cut(s) 2796
DraIII CACNNNGTG 1 cut(s) 183
Eco130I CCWWGG 7 cut(s) 604, 748, 892, 1036, 1279, 2314, 3186
Eco147I AGGCCT 1 cut(s) 3275
Eco47I GGWCC 7 cut(s) 556, 700, 844, 988, 1420, 1811, 3556
Eco57I CTGAAG 2 cut(s) 135, 2166
EcoO109I RGGNCCY 1 cut(s) 2531
EcoRI GAATTC 1 cut(s) 2319
EcoT14I CCWWGG 7 cut(s) 604, 748, 892, 1036, 1279, 2314, 3186
EcoT22I ATGCAT 1 cut(s) 3702
ErhI CCWWGG 7 cut(s) 604, 748, 892, 1036, 1279, 2314, 3186
FalI AAGNNNNNCTT 4 cut(s) 553, 585, 841, 873
FaqI GGGAC 1 cut(s) 1989
FauI CCCGC 4 cut(s) 170, 205, 388, 1612
FauNDI CATATG 2 cut(s) 134, 3349
FblI GTMKAC 3 cut(s) 289, 2176, 2892
Fnu4HI GCNGC 4 cut(s) 213, 2596, 2682, 3105
Fsp4HI GCNGC 4 cut(s) 213, 2596, 2682, 3105
GluI GCNGC 4 cut(s) 213, 2596, 2682, 3105
HaeIII GGCC 6 cut(s) 1041, 2102, 2532, 2631, 3275, 3764
HapII CCGG 2 cut(s) 285, 3456
HgaI GACGC 1 cut(s) 2878
HincII GTYRAC 2 cut(s) 1627, 1704
HindII GTYRAC 2 cut(s) 1627, 1704
HindIII AAGCTT 3 cut(s) 1825, 2473, 3032
HpaII CCGG 2 cut(s) 285, 3456
Hpy188I TCNGA 8 cut(s) 387, 715, 1681, 2185, 2289, 3007, 3265, 3286
Hpy99I CGWCG 1 cut(s) 2606
HpyAV CCTTC 7 cut(s) 1859, 2190, 2474, 2522, 2600, 3441, 3498
HpyCH4III ACNGT 5 cut(s) 1019, 1307, 1451, 2280, 2549
HpyCH4IV ACGT 3 cut(s) 2502, 2601, 3500
HpyF10VI GCNNNNNNNGC 6 cut(s) 380, 2262, 2481, 2490, 2628, 2871
HpySE526I ACGT 3 cut(s) 2502, 2601, 3500
Kzo9I GATC 9 cut(s) 387, 418, 466, 610, 898, 1186, 1330, 2203, 3751
LmnI GCTCC 2 cut(s) 1673, 2871
Lsp1109I GCAGC 3 cut(s) 224, 2693, 3091
LweI GCATC 7 cut(s) 361, 2136, 2752, 2874, 3460, 3521, 3687
MaeII ACGT 3 cut(s) 2502, 2601, 3500
MaeIII GTNAC 2 cut(s) 2836, 2912
MalI GATC 9 cut(s) 389, 420, 468, 612, 900, 1188, 1332, 2205, 3753
MbiI CCGCTC 3 cut(s) 200, 383, 2874
MboI GATC 9 cut(s) 387, 418, 466, 610, 898, 1186, 1330, 2203, 3751
MboII GAAGA 8 cut(s) 326, 1708, 2073, 2786, 2974, 3137, 3483, 3625
MfeI CAATTG 7 cut(s) 430, 1571, 1715, 2247, 2945, 3219, 3540
MhlI GDGCHC 4 cut(s) 1278, 1987, 3001, 3228
MlyI GAGTC 1 cut(s) 3311
MmeI TCCRAC 4 cut(s) 232, 2313, 3237, 3599
Mph1103I ATGCAT 1 cut(s) 3702
MroXI GAANNNNTTC 3 cut(s) 126, 1874, 2128
MslI CAYNNNNRTG 7 cut(s) 1931, 1969, 2769, 2834, 3207, 3299, 3386
MspA1I CMGCKG 2 cut(s) 585, 873
MspI CCGG 2 cut(s) 285, 3456
MspR9I CCNGG 1 cut(s) 3456
MunI CAATTG 7 cut(s) 430, 1571, 1715, 2247, 2945, 3219, 3540
Mva1269I GAATGC 1 cut(s) 2978
MwoI GCNNNNNNNGC 6 cut(s) 380, 2262, 2481, 2490, 2628, 2871
NciI CCSGG 1 cut(s) 3456
NcoI CCATGG 1 cut(s) 2314
NdeI CATATG 2 cut(s) 134, 3349
NdeII GATC 9 cut(s) 387, 418, 466, 610, 898, 1186, 1330, 2203, 3751
NlaIV GGNNCC 5 cut(s) 1669, 1871, 2101, 2533, 3486
NmuCI GTSAC 2 cut(s) 2836, 2912
NsiI ATGCAT 1 cut(s) 3702
NspI RCATGY 3 cut(s) 1839, 2488, 3199
OliI CACNNNNGTG 1 cut(s) 3207
PaeI GCATGC 1 cut(s) 2488
PceI AGGCCT 1 cut(s) 3275
PcsI WCGNNNNNNNCGW 1 cut(s) 3399
PctI GAATGC 1 cut(s) 2978
PdmI GAANNNNTTC 3 cut(s) 126, 1874, 2128
PfeI GAWTC 9 cut(s) 718, 731, 1595, 2115, 2661, 2852, 3260, 3310, 3634
Pfl23II CGTACG 1 cut(s) 2499
PfoI TCCNGGA 1 cut(s) 3454
PkrI GCNGC 4 cut(s) 214, 2597, 2683, 3106
PleI GAGTC 1 cut(s) 3311
PpsI GAGTC 1 cut(s) 3311
Ppu21I YACGTR 1 cut(s) 2503
PshBI ATTAAT 1 cut(s) 1733
PsiI TTATAA 3 cut(s) 1293, 1437, 1581
PspLI CGTACG 1 cut(s) 2499
PspN4I GGNNCC 5 cut(s) 1669, 1871, 2101, 2533, 3486
PvuII CAGCTG 2 cut(s) 585, 873
RsaI GTAC 7 cut(s) 60, 298, 2282, 2501, 2570, 3077, 3600
RsaNI GTAC 7 cut(s) 59, 297, 2281, 2500, 2569, 3076, 3599
RseI CAYNNNNRTG 7 cut(s) 1931, 1969, 2769, 2834, 3207, 3299, 3386
SatI GCNGC 4 cut(s) 213, 2596, 2682, 3105
Sau3AI GATC 9 cut(s) 387, 418, 466, 610, 898, 1186, 1330, 2203, 3751
ScaI AGTACT 1 cut(s) 3600
SchI GAGTC 1 cut(s) 3311
ScrFI CCNGG 1 cut(s) 3456
SduI GDGCHC 4 cut(s) 1278, 1987, 3001, 3228
SfaNI GCATC 7 cut(s) 361, 2136, 2752, 2874, 3460, 3521, 3687
SfcI CTRYAG 4 cut(s) 784, 1072, 1762, 2893
SinI GGWCC 7 cut(s) 556, 700, 844, 988, 1420, 1811, 3556
SmiMI CAYNNNNRTG 7 cut(s) 1931, 1969, 2769, 2834, 3207, 3299, 3386
SpeI ACTAGT 1 cut(s) 2197
SphI GCATGC 1 cut(s) 2488
SseBI AGGCCT 1 cut(s) 3275
SspI AATATT 2 cut(s) 1756, 3163
StuI AGGCCT 1 cut(s) 3275
StyD4I CCNGG 1 cut(s) 3454
StyI CCWWGG 7 cut(s) 604, 748, 892, 1036, 1279, 2314, 3186
TaaI ACNGT 5 cut(s) 1019, 1307, 1451, 2280, 2549
TaiI ACGT 3 cut(s) 2505, 2604, 3503
TaqI TCGA 3 cut(s) 2557, 2604, 3707
TatI WGTACW 3 cut(s) 2568, 3075, 3598
TauI GCSGC 1 cut(s) 2598
TfiI GAWTC 9 cut(s) 718, 731, 1595, 2115, 2661, 2852, 3260, 3310, 3634
TscAI CASTG 4 cut(s) 445, 1597, 1794, 2554
TseFI GTSAC 2 cut(s) 2836, 2912
TseI GCWGC 3 cut(s) 212, 2681, 3104
Tsp45I GTSAC 2 cut(s) 2836, 2912
TspRI CASTG 4 cut(s) 445, 1597, 1794, 2554
VneI GTGCAC 3 cut(s) 1274, 1983, 3224
VpaK11BI GGWCC 7 cut(s) 556, 700, 844, 988, 1420, 1811, 3556
VspI ATTAAT 1 cut(s) 1733
XceI RCATGY 3 cut(s) 1839, 2488, 3199
XmaJI CCTAGG 5 cut(s) 604, 748, 892, 1036, 1279
XmiI GTMKAC 3 cut(s) 289, 2176, 2892
XmnI GAANNNNTTC 3 cut(s) 126, 1874, 2128
ZrmI AGTACT 1 cut(s) 3600
Zsp2I ATGCAT 1 cut(s) 3702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.