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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 13 |
| AccI | GTMKAC | 1 cut(s) | 7 |
| AciI | CCGC | 6 cut(s) | 88, 179, 225, 302, 346, 391 |
| AclWI | GGATC | 1 cut(s) | 123 |
| AcoI | YGGCCR | 1 cut(s) | 343 |
| AcyI | GRCGYC | 1 cut(s) | 10 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 265 |
| AjnI | CCWGG | 1 cut(s) | 377 |
| AluBI | AGCT | 1 cut(s) | 277 |
| AluI | AGCT | 1 cut(s) | 277 |
| Alw26I | GTCTC | 2 cut(s) | 413, 420 |
| AlwI | GGATC | 1 cut(s) | 123 |
| AoxI | GGCC | 1 cut(s) | 343 |
| ApeKI | GCWGC | 1 cut(s) | 304 |
| AspS9I | GGNCC | 1 cut(s) | 286 |
| AsuC2I | CCSGG | 1 cut(s) | 342 |
| AsuHPI | GGTGA | 2 cut(s) | 344, 380 |
| AvaII | GGWCC | 1 cut(s) | 286 |
| BbsI | GAAGAC | 1 cut(s) | 255 |
| BbvI | GCAGC | 1 cut(s) | 316 |
| BccI | CCATC | 4 cut(s) | 29, 41, 332, 405 |
| BceAI | ACGGC | 1 cut(s) | 148 |
| BciT130I | CCWGG | 1 cut(s) | 379 |
| BcnI | CCSGG | 1 cut(s) | 342 |
| BcoDI | GTCTC | 2 cut(s) | 413, 420 |
| BfaI | CTAG | 1 cut(s) | 228 |
| BisI | GCNGC | 4 cut(s) | 179, 302, 305, 346 |
| BlsI | GCNGC | 4 cut(s) | 180, 303, 306, 347 |
| Bme1390I | CCNGG | 2 cut(s) | 342, 379 |
| Bme18I | GGWCC | 1 cut(s) | 286 |
| BmgT120I | GGNCC | 1 cut(s) | 286 |
| BmrFI | CCNGG | 2 cut(s) | 342, 379 |
| BmsI | GCATC | 1 cut(s) | 412 |
| BpiI | GAAGAC | 1 cut(s) | 255 |
| BpuEI | CTTGAG | 1 cut(s) | 395 |
| BpuMI | CCSGG | 1 cut(s) | 342 |
| BsaHI | GRCGYC | 1 cut(s) | 10 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 67, 97, 322, 352 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 265 |
| Bse1I | ACTGG | 2 cut(s) | 172, 214 |
| BseBI | CCWGG | 1 cut(s) | 379 |
| BseGI | GGATG | 2 cut(s) | 21, 332 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 265 |
| BseMII | CTCAG | 2 cut(s) | 305, 431 |
| BseNI | ACTGG | 2 cut(s) | 172, 214 |
| BseRI | GAGGAG | 1 cut(s) | 72 |
| BseX3I | CGGCCG | 1 cut(s) | 343 |
| BseXI | GCAGC | 1 cut(s) | 316 |
| Bsh1285I | CGRYCG | 1 cut(s) | 346 |
| BshFI | GGCC | 1 cut(s) | 345 |
| BsiEI | CGRYCG | 1 cut(s) | 346 |
| BsiSI | CCGG | 1 cut(s) | 342 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 265 |
| BsmAI | GTCTC | 2 cut(s) | 413, 420 |
| BsmBI | CGTCTC | 1 cut(s) | 413 |
| BsnI | GGCC | 1 cut(s) | 345 |
| Bsp143I | GATC | 2 cut(s) | 114, 128 |
| BspACI | CCGC | 6 cut(s) | 88, 179, 225, 302, 346, 391 |
| BspANI | GGCC | 1 cut(s) | 345 |
| BspCNI | CTCAG | 2 cut(s) | 306, 430 |
| BspPI | GGATC | 1 cut(s) | 123 |
| BsrI | ACTGG | 2 cut(s) | 172, 214 |
| BssMI | GATC | 2 cut(s) | 114, 128 |
| BssNI | GRCGYC | 1 cut(s) | 10 |
| Bst2UI | CCWGG | 1 cut(s) | 379 |
| Bst4CI | ACNGT | 2 cut(s) | 311, 356 |
| Bst6I | CTCTTC | 1 cut(s) | 190 |
| BstACI | GRCGYC | 1 cut(s) | 10 |
| BstC8I | GCNNGC | 4 cut(s) | 43, 47, 271, 275 |
| BstDEI | CTNAG | 2 cut(s) | 314, 417 |
| BstF5I | GGATG | 2 cut(s) | 21, 332 |
| BstKTI | GATC | 2 cut(s) | 117, 131 |
| BstMAI | GTCTC | 2 cut(s) | 413, 420 |
| BstMBI | GATC | 2 cut(s) | 114, 128 |
| BstMCI | CGRYCG | 1 cut(s) | 346 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 38 |
| BstNI | CCWGG | 1 cut(s) | 379 |
| BstSCI | CCNGG | 2 cut(s) | 340, 377 |
| BstV1I | GCAGC | 1 cut(s) | 316 |
| BstV2I | GAAGAC | 1 cut(s) | 255 |
| BstZI | CGGCCG | 1 cut(s) | 343 |
| BsuRI | GGCC | 1 cut(s) | 345 |
| BtgZI | GCGATG | 1 cut(s) | 22 |
| BtsCI | GGATG | 2 cut(s) | 21, 332 |
| Cac8I | GCNNGC | 4 cut(s) | 43, 47, 271, 275 |
| Cfr13I | GGNCC | 1 cut(s) | 286 |
| CseI | GACGC | 1 cut(s) | 260 |
| CviAII | CATG | 1 cut(s) | 91 |
| CviJI | RGCY | 9 cut(s) | 141, 151, 233, 269, 277, 293, 345, 370, 377 |
| CviKI_1 | RGCY | 9 cut(s) | 141, 151, 233, 269, 277, 293, 345, 370, 377 |
| DdeI | CTNAG | 2 cut(s) | 314, 417 |
| DpnI | GATC | 2 cut(s) | 116, 130 |
| DpnII | GATC | 2 cut(s) | 114, 128 |
| EaeI | YGGCCR | 1 cut(s) | 343 |
| EagI | CGGCCG | 1 cut(s) | 343 |
| Eam1104I | CTCTTC | 1 cut(s) | 190 |
| EarI | CTCTTC | 1 cut(s) | 190 |
| EclXI | CGGCCG | 1 cut(s) | 343 |
| Eco47I | GGWCC | 1 cut(s) | 286 |
| Eco52I | CGGCCG | 1 cut(s) | 343 |
| EcoRII | CCWGG | 1 cut(s) | 377 |
| Esp3I | CGTCTC | 1 cut(s) | 413 |
| FaeI | CATG | 1 cut(s) | 94 |
| FaiI | YATR | 2 cut(s) | 92, 109 |
| FatI | CATG | 1 cut(s) | 90 |
| FauI | CCCGC | 1 cut(s) | 95 |
| FblI | GTMKAC | 1 cut(s) | 7 |
| Fnu4HI | GCNGC | 4 cut(s) | 179, 302, 305, 346 |
| FokI | GGATG | 2 cut(s) | 8, 319 |
| Fsp4HI | GCNGC | 4 cut(s) | 179, 302, 305, 346 |
| FspBI | CTAG | 1 cut(s) | 228 |
| GluI | GCNGC | 4 cut(s) | 179, 302, 305, 346 |
| HaeIII | GGCC | 1 cut(s) | 345 |
| HapII | CCGG | 1 cut(s) | 342 |
| HgaI | GACGC | 1 cut(s) | 260 |
| Hin1I | GRCGYC | 1 cut(s) | 10 |
| Hin1II | CATG | 1 cut(s) | 94 |
| HindIII | AAGCTT | 1 cut(s) | 275 |
| HpaII | CCGG | 1 cut(s) | 342 |
| HphI | GGTGA | 2 cut(s) | 344, 380 |
| Hpy166II | GTNNAC | 2 cut(s) | 8, 359 |
| Hpy188I | TCNGA | 4 cut(s) | 15, 99, 119, 315 |
| Hpy188III | TCNNGA | 1 cut(s) | 328 |
| Hpy8I | GTNNAC | 2 cut(s) | 8, 359 |
| Hpy99I | CGWCG | 1 cut(s) | 15 |
| HpyCH4III | ACNGT | 2 cut(s) | 311, 356 |
| HpyCH4IV | ACGT | 1 cut(s) | 10 |
| HpyCH4V | TGCA | 1 cut(s) | 273 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 38 |
| HpyF3I | CTNAG | 2 cut(s) | 314, 417 |
| HpySE526I | ACGT | 1 cut(s) | 10 |
| Hsp92I | GRCGYC | 1 cut(s) | 10 |
| Hsp92II | CATG | 1 cut(s) | 94 |
| Kzo9I | GATC | 2 cut(s) | 114, 128 |
| LpnPI | CCDG | 9 cut(s) | 55, 125, 155, 185, 227, 251, 355, 364, 391 |
| Lsp1109I | GCAGC | 1 cut(s) | 316 |
| LweI | GCATC | 1 cut(s) | 412 |
| MaeI | CTAG | 1 cut(s) | 228 |
| MaeII | ACGT | 1 cut(s) | 10 |
| MalI | GATC | 2 cut(s) | 116, 130 |
| MboI | GATC | 2 cut(s) | 114, 128 |
| MboII | GAAGA | 2 cut(s) | 207, 260 |
| MnlI | CCTC | 7 cut(s) | 38, 76, 90, 93, 167, 244, 348 |
| MseI | TTAA | 2 cut(s) | 189, 422 |
| MspA1I | CMGCKG | 1 cut(s) | 181 |
| MspI | CCGG | 1 cut(s) | 342 |
| MspR9I | CCNGG | 2 cut(s) | 342, 379 |
| MvaI | CCWGG | 1 cut(s) | 379 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 38 |
| NciI | CCSGG | 1 cut(s) | 342 |
| NdeII | GATC | 2 cut(s) | 114, 128 |
| NlaIII | CATG | 1 cut(s) | 94 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 143, 182 |
| PkrI | GCNGC | 4 cut(s) | 180, 303, 306, 347 |
| Psp6I | CCWGG | 1 cut(s) | 377 |
| PspGI | CCWGG | 1 cut(s) | 377 |
| PspPI | GGNCC | 1 cut(s) | 286 |
| SaqAI | TTAA | 2 cut(s) | 189, 422 |
| SatI | GCNGC | 4 cut(s) | 179, 302, 305, 346 |
| Sau3AI | GATC | 2 cut(s) | 114, 128 |
| Sau96I | GGNCC | 1 cut(s) | 286 |
| ScrFI | CCNGG | 2 cut(s) | 342, 379 |
| SetI | ASST | 7 cut(s) | 13, 30, 68, 82, 159, 279, 288 |
| SfaNI | GCATC | 1 cut(s) | 412 |
| SinI | GGWCC | 1 cut(s) | 286 |
| SmlI | CTYRAG | 1 cut(s) | 410 |
| SmoI | CTYRAG | 1 cut(s) | 410 |
| SsiI | CCGC | 6 cut(s) | 88, 179, 225, 302, 346, 391 |
| SspMI | CTAG | 1 cut(s) | 228 |
| StyD4I | CCNGG | 2 cut(s) | 340, 377 |
| TaaI | ACNGT | 2 cut(s) | 311, 356 |
| TaiI | ACGT | 1 cut(s) | 13 |
| TaqI | TCGA | 3 cut(s) | 127, 146, 185 |
| TauI | GCSGC | 3 cut(s) | 181, 304, 348 |
| Tru1I | TTAA | 2 cut(s) | 189, 422 |
| Tru9I | TTAA | 2 cut(s) | 189, 422 |
| TseI | GCWGC | 1 cut(s) | 304 |
| VpaK11BI | GGWCC | 1 cut(s) | 286 |
| XmiI | GTMKAC | 1 cut(s) | 7 |
| XspI | CTAG | 1 cut(s) | 228 |
| ZraI | GACGTC | 1 cut(s) | 11 |