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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 48, 99, 102, 703 |
| AclWI | GGATC | 2 cut(s) | 149, 622 |
| AcoI | YGGCCR | 1 cut(s) | 655 |
| AcsI | RAATTY | 4 cut(s) | 163, 172, 804, 947 |
| AcuI | CTGAAG | 1 cut(s) | 242 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 95, 167, 890 |
| AgsI | TTSAA | 3 cut(s) | 178, 297, 441 |
| AluBI | AGCT | 5 cut(s) | 184, 314, 672, 690, 889 |
| AluI | AGCT | 5 cut(s) | 184, 314, 672, 690, 889 |
| AlwI | GGATC | 2 cut(s) | 149, 622 |
| AoxI | GGCC | 1 cut(s) | 655 |
| ApeKI | GCWGC | 1 cut(s) | 45 |
| ApoI | RAATTY | 4 cut(s) | 163, 172, 804, 947 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 185 |
| AspS9I | GGNCC | 1 cut(s) | 742 |
| AsuHPI | GGTGA | 2 cut(s) | 503, 812 |
| AvaII | GGWCC | 1 cut(s) | 742 |
| BalI | TGGCCA | 1 cut(s) | 657 |
| BauI | CACGAG | 1 cut(s) | 685 |
| BbvI | GCAGC | 1 cut(s) | 57 |
| BccI | CCATC | 2 cut(s) | 348, 704 |
| BclI | TGATCA | 2 cut(s) | 91, 145 |
| BfaI | CTAG | 2 cut(s) | 311, 927 |
| BisI | GCNGC | 4 cut(s) | 46, 49, 100, 103 |
| BlsI | GCNGC | 4 cut(s) | 47, 50, 101, 104 |
| Bme18I | GGWCC | 1 cut(s) | 742 |
| BmgT120I | GGNCC | 1 cut(s) | 742 |
| BmiI | GGNNCC | 1 cut(s) | 716 |
| BmrI | ACTGGG | 1 cut(s) | 826 |
| BmuI | ACTGGG | 1 cut(s) | 826 |
| Bpu10I | CCTNAGC | 1 cut(s) | 885 |
| BpuEI | CTTGAG | 4 cut(s) | 51, 61, 105, 115 |
| BsaJI | CCNNGG | 4 cut(s) | 487, 607, 745, 796 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 95, 167, 890 |
| Bse1I | ACTGG | 5 cut(s) | 223, 420, 439, 821, 874 |
| BseDI | CCNNGG | 4 cut(s) | 487, 607, 745, 796 |
| BseGI | GGATG | 2 cut(s) | 534, 839 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 95, 167, 890 |
| BseMII | CTCAG | 4 cut(s) | 554, 752, 793, 876 |
| BseNI | ACTGG | 5 cut(s) | 223, 420, 439, 821, 874 |
| BseXI | GCAGC | 1 cut(s) | 57 |
| BshFI | GGCC | 1 cut(s) | 657 |
| BslFI | GGGAC | 3 cut(s) | 473, 834, 947 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 95, 167, 890 |
| BsmFI | GGGAC | 3 cut(s) | 473, 834, 947 |
| BsnI | GGCC | 1 cut(s) | 657 |
| Bsp143I | GATC | 6 cut(s) | 91, 145, 154, 529, 614, 919 |
| Bsp19I | CCATGG | 1 cut(s) | 796 |
| BspACI | CCGC | 4 cut(s) | 48, 99, 102, 703 |
| BspANI | GGCC | 1 cut(s) | 657 |
| BspCNI | CTCAG | 4 cut(s) | 555, 751, 792, 877 |
| BspHI | TCATGA | 2 cut(s) | 540, 910 |
| BspLI | GGNNCC | 1 cut(s) | 716 |
| BspPI | GGATC | 2 cut(s) | 149, 622 |
| BsrI | ACTGG | 5 cut(s) | 223, 420, 439, 821, 874 |
| BssECI | CCNNGG | 4 cut(s) | 487, 607, 745, 796 |
| BssMI | GATC | 6 cut(s) | 91, 145, 154, 529, 614, 919 |
| BssSI | CACGAG | 1 cut(s) | 685 |
| BssT1I | CCWWGG | 3 cut(s) | 607, 745, 796 |
| Bst2BI | CACGAG | 1 cut(s) | 685 |
| Bst6I | CTCTTC | 1 cut(s) | 261 |
| BstC8I | GCNNGC | 1 cut(s) | 727 |
| BstDEI | CTNAG | 4 cut(s) | 563, 738, 779, 885 |
| BstDSI | CCRYGG | 1 cut(s) | 796 |
| BstF5I | GGATG | 2 cut(s) | 534, 839 |
| BstKTI | GATC | 6 cut(s) | 94, 148, 157, 532, 617, 922 |
| BstMBI | GATC | 6 cut(s) | 91, 145, 154, 529, 614, 919 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 45 |
| BstNSI | RCATGY | 1 cut(s) | 684 |
| BstV1I | GCAGC | 1 cut(s) | 57 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 218, 506, 653 |
| BsuRI | GGCC | 1 cut(s) | 657 |
| BtgI | CCRYGG | 1 cut(s) | 796 |
| BtsCI | GGATG | 2 cut(s) | 534, 839 |
| BtsI | GCAGTG | 1 cut(s) | 46 |
| BtsIMutI | CAGTG | 2 cut(s) | 46, 432 |
| Cac8I | GCNNGC | 1 cut(s) | 727 |
| CciI | TCATGA | 2 cut(s) | 540, 910 |
| Cfr13I | GGNCC | 1 cut(s) | 742 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 436, 471 |
| CviAII | CATG | 5 cut(s) | 95, 541, 681, 797, 911 |
| DdeI | CTNAG | 4 cut(s) | 563, 738, 779, 885 |
| DpnI | GATC | 6 cut(s) | 93, 147, 156, 531, 616, 921 |
| DpnII | GATC | 6 cut(s) | 91, 145, 154, 529, 614, 919 |
| EaeI | YGGCCR | 1 cut(s) | 655 |
| Eam1104I | CTCTTC | 1 cut(s) | 261 |
| EarI | CTCTTC | 1 cut(s) | 261 |
| EciI | GGCGGA | 1 cut(s) | 692 |
| Eco130I | CCWWGG | 3 cut(s) | 607, 745, 796 |
| Eco47I | GGWCC | 1 cut(s) | 742 |
| Eco57I | CTGAAG | 1 cut(s) | 242 |
| EcoO109I | RGGNCCY | 1 cut(s) | 742 |
| EcoT14I | CCWWGG | 3 cut(s) | 607, 745, 796 |
| ErhI | CCWWGG | 3 cut(s) | 607, 745, 796 |
| FaeI | CATG | 5 cut(s) | 98, 544, 684, 800, 914 |
| FaqI | GGGAC | 3 cut(s) | 473, 834, 947 |
| FatI | CATG | 5 cut(s) | 94, 540, 680, 796, 910 |
| FbaI | TGATCA | 2 cut(s) | 91, 145 |
| Fnu4HI | GCNGC | 4 cut(s) | 46, 49, 100, 103 |
| FokI | GGATG | 2 cut(s) | 521, 826 |
| Fsp4HI | GCNGC | 4 cut(s) | 46, 49, 100, 103 |
| FspBI | CTAG | 2 cut(s) | 311, 927 |
| GluI | GCNGC | 4 cut(s) | 46, 49, 100, 103 |
| HaeIII | GGCC | 1 cut(s) | 657 |
| Hin1II | CATG | 5 cut(s) | 98, 544, 684, 800, 914 |
| HindIII | AAGCTT | 1 cut(s) | 670 |
| HinfI | GANTC | 5 cut(s) | 135, 244, 280, 661, 699 |
| HphI | GGTGA | 2 cut(s) | 503, 812 |
| Hpy166II | GTNNAC | 2 cut(s) | 73, 127 |
| Hpy188I | TCNGA | 7 cut(s) | 140, 154, 249, 261, 564, 698, 946 |
| Hpy188III | TCNNGA | 8 cut(s) | 78, 132, 344, 410, 541, 740, 764, 911 |
| Hpy8I | GTNNAC | 2 cut(s) | 73, 127 |
| HpyAV | CCTTC | 2 cut(s) | 344, 951 |
| HpyCH4V | TGCA | 3 cut(s) | 39, 274, 684 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 45 |
| HpyF3I | CTNAG | 4 cut(s) | 563, 738, 779, 885 |
| Hsp92II | CATG | 5 cut(s) | 98, 544, 684, 800, 914 |
| Ksp22I | TGATCA | 2 cut(s) | 91, 145 |
| Kzo9I | GATC | 6 cut(s) | 91, 145, 154, 529, 614, 919 |
| Lsp1109I | GCAGC | 1 cut(s) | 57 |
| MaeI | CTAG | 2 cut(s) | 311, 927 |
| MaeIII | GTNAC | 1 cut(s) | 491 |
| MalI | GATC | 6 cut(s) | 93, 147, 156, 531, 616, 921 |
| MboI | GATC | 6 cut(s) | 91, 145, 154, 529, 614, 919 |
| MboII | GAAGA | 3 cut(s) | 190, 248, 400 |
| MfeI | CAATTG | 1 cut(s) | 719 |
| MlsI | TGGCCA | 1 cut(s) | 657 |
| MluCI | AATT | 9 cut(s) | 163, 172, 441, 575, 719, 804, 833, 849, 947 |
| MluNI | TGGCCA | 1 cut(s) | 657 |
| MlyI | GAGTC | 1 cut(s) | 708 |
| MmeI | TCCRAC | 1 cut(s) | 163 |
| MnlI | CCTC | 3 cut(s) | 168, 497, 548 |
| Mox20I | TGGCCA | 1 cut(s) | 657 |
| MroXI | GAANNNNTTC | 1 cut(s) | 185 |
| MscI | TGGCCA | 1 cut(s) | 657 |
| MseI | TTAA | 3 cut(s) | 482, 674, 836 |
| MslI | CAYNNNNRTG | 1 cut(s) | 539 |
| Msp20I | TGGCCA | 1 cut(s) | 657 |
| MspA1I | CMGCKG | 1 cut(s) | 48 |
| MunI | CAATTG | 1 cut(s) | 719 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 45 |
| NcoI | CCATGG | 1 cut(s) | 796 |
| NdeII | GATC | 6 cut(s) | 91, 145, 154, 529, 614, 919 |
| NlaIII | CATG | 5 cut(s) | 98, 544, 684, 800, 914 |
| NlaIV | GGNNCC | 1 cut(s) | 716 |
| NmuCI | GTSAC | 1 cut(s) | 491 |
| NspI | RCATGY | 1 cut(s) | 684 |
| PagI | TCATGA | 2 cut(s) | 540, 910 |
| PdmI | GAANNNNTTC | 1 cut(s) | 185 |
| PfeI | GAWTC | 4 cut(s) | 135, 244, 280, 661 |
| PkrI | GCNGC | 4 cut(s) | 47, 50, 101, 104 |
| PleI | GAGTC | 1 cut(s) | 707 |
| PpsI | GAGTC | 1 cut(s) | 707 |
| PpuMI | RGGWCCY | 1 cut(s) | 742 |
| Psp5II | RGGWCCY | 1 cut(s) | 742 |
| PspN4I | GGNNCC | 1 cut(s) | 716 |
| PspPI | GGNCC | 1 cut(s) | 742 |
| PspPPI | RGGWCCY | 1 cut(s) | 742 |
| RseI | CAYNNNNRTG | 1 cut(s) | 539 |
| SaqAI | TTAA | 3 cut(s) | 482, 674, 836 |
| SatI | GCNGC | 4 cut(s) | 46, 49, 100, 103 |
| Sau3AI | GATC | 6 cut(s) | 91, 145, 154, 529, 614, 919 |
| Sau96I | GGNCC | 1 cut(s) | 742 |
| SchI | GAGTC | 1 cut(s) | 708 |
| SinI | GGWCC | 1 cut(s) | 742 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 539 |
| SmlI | CTYRAG | 4 cut(s) | 66, 76, 120, 130 |
| SmoI | CTYRAG | 4 cut(s) | 66, 76, 120, 130 |
| Sse9I | AATT | 9 cut(s) | 163, 172, 441, 575, 719, 804, 833, 849, 947 |
| SsiI | CCGC | 4 cut(s) | 48, 99, 102, 703 |
| SspMI | CTAG | 2 cut(s) | 311, 927 |
| StyI | CCWWGG | 3 cut(s) | 607, 745, 796 |
| TaqI | TCGA | 2 cut(s) | 345, 918 |
| TasI | AATT | 9 cut(s) | 163, 172, 441, 575, 719, 804, 833, 849, 947 |
| TauI | GCSGC | 3 cut(s) | 51, 102, 105 |
| TfiI | GAWTC | 4 cut(s) | 135, 244, 280, 661 |
| Tru1I | TTAA | 3 cut(s) | 482, 674, 836 |
| Tru9I | TTAA | 3 cut(s) | 482, 674, 836 |
| TscAI | CASTG | 2 cut(s) | 46, 439 |
| TseFI | GTSAC | 1 cut(s) | 491 |
| TseI | GCWGC | 1 cut(s) | 45 |
| Tsp45I | GTSAC | 1 cut(s) | 491 |
| TspDTI | ATGAA | 6 cut(s) | 407, 441, 557, 640, 899, 927 |
| TspRI | CASTG | 2 cut(s) | 46, 439 |
| VpaK11BI | GGWCC | 1 cut(s) | 742 |
| XapI | RAATTY | 4 cut(s) | 163, 172, 804, 947 |
| XceI | RCATGY | 1 cut(s) | 684 |
| XmnI | GAANNNNTTC | 1 cut(s) | 185 |
| XspI | CTAG | 2 cut(s) | 311, 927 |