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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 218, 938 |
| AciI | CCGC | 1 cut(s) | 902 |
| AclWI | GGATC | 1 cut(s) | 465 |
| AcsI | RAATTY | 3 cut(s) | 97, 954, 1209 |
| AcuI | CTGAAG | 2 cut(s) | 267, 1055 |
| AfaI | GTAC | 4 cut(s) | 176, 536, 750, 833 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 146, 218, 901, 938 |
| AflII | CTTAAG | 1 cut(s) | 178 |
| AflIII | ACRYGT | 1 cut(s) | 1158 |
| AjnI | CCWGG | 1 cut(s) | 72 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1022, 1054 |
| AluBI | AGCT | 8 cut(s) | 10, 28, 121, 531, 720, 738, 937, 1146 |
| AluI | AGCT | 8 cut(s) | 10, 28, 121, 531, 720, 738, 937, 1146 |
| Alw26I | GTCTC | 1 cut(s) | 789 |
| AlwI | GGATC | 1 cut(s) | 465 |
| Ama87I | CYCGRG | 1 cut(s) | 713 |
| AoxI | GGCC | 1 cut(s) | 252 |
| ApoI | RAATTY | 3 cut(s) | 97, 954, 1209 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1006, 1038 |
| AseI | ATTAAT | 1 cut(s) | 1128 |
| AspS9I | GGNCC | 3 cut(s) | 200, 704, 1061 |
| AsuHPI | GGTGA | 5 cut(s) | 377, 521, 860, 1039, 1166 |
| AvaI | CYCGRG | 1 cut(s) | 713 |
| AvaII | GGWCC | 3 cut(s) | 200, 704, 1061 |
| AxyI | CCTNAGG | 1 cut(s) | 426 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 1266 |
| BccI | CCATC | 1 cut(s) | 572 |
| BciT130I | CCWGG | 1 cut(s) | 74 |
| BciVI | GTATCC | 1 cut(s) | 813 |
| BcoDI | GTCTC | 1 cut(s) | 789 |
| BfaI | CTAG | 2 cut(s) | 50, 1250 |
| BfmI | CTRYAG | 2 cut(s) | 415, 461 |
| BfrI | CTTAAG | 1 cut(s) | 178 |
| BfuI | GTATCC | 1 cut(s) | 813 |
| BglII | AGATCT | 2 cut(s) | 808, 1006 |
| Bme1390I | CCNGG | 1 cut(s) | 74 |
| Bme18I | GGWCC | 3 cut(s) | 200, 704, 1061 |
| BmeT110I | CYCGRG | 1 cut(s) | 713 |
| BmgT120I | GGNCC | 3 cut(s) | 200, 704, 1061 |
| BmiI | GGNNCC | 1 cut(s) | 764 |
| BmrFI | CCNGG | 1 cut(s) | 74 |
| BmrI | ACTGGG | 1 cut(s) | 874 |
| BmsI | GCATC | 3 cut(s) | 365, 956, 1091 |
| BmuI | ACTGGG | 1 cut(s) | 874 |
| BpuEI | CTTGAG | 1 cut(s) | 771 |
| BsaJI | CCNNGG | 1 cut(s) | 73 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 395, 425 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 146, 218, 901, 938 |
| Bse1I | ACTGG | 3 cut(s) | 778, 869, 922 |
| Bse21I | CCTNAGG | 1 cut(s) | 426 |
| Bse3DI | GCAATG | 2 cut(s) | 784, 949 |
| BseBI | CCWGG | 1 cut(s) | 74 |
| BseDI | CCNNGG | 1 cut(s) | 73 |
| BseGI | GGATG | 2 cut(s) | 356, 564 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 146, 218, 901, 938 |
| BseMI | GCAATG | 2 cut(s) | 784, 949 |
| BseMII | CTCAG | 3 cut(s) | 308, 504, 1175 |
| BseNI | ACTGG | 3 cut(s) | 778, 869, 922 |
| BshFI | GGCC | 1 cut(s) | 254 |
| BsiHKCI | CYCGRG | 1 cut(s) | 713 |
| BslFI | GGGAC | 2 cut(s) | 882, 1027 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 146, 218, 901, 938 |
| BsmAI | GTCTC | 1 cut(s) | 789 |
| BsmFI | GGGAC | 2 cut(s) | 882, 1027 |
| BsmI | GAATGC | 2 cut(s) | 321, 683 |
| BsnI | GGCC | 1 cut(s) | 254 |
| BsoBI | CYCGRG | 1 cut(s) | 713 |
| Bsp143I | GATC | 5 cut(s) | 367, 457, 808, 967, 1006 |
| BspACI | CCGC | 1 cut(s) | 902 |
| BspANI | GGCC | 1 cut(s) | 254 |
| BspCNI | CTCAG | 3 cut(s) | 309, 503, 1176 |
| BspLI | GGNNCC | 1 cut(s) | 764 |
| BspMAI | CTGCAG | 1 cut(s) | 419 |
| BspPI | GGATC | 1 cut(s) | 465 |
| BspTI | CTTAAG | 1 cut(s) | 178 |
| BsrDI | GCAATG | 2 cut(s) | 784, 949 |
| BsrI | ACTGG | 3 cut(s) | 778, 869, 922 |
| BssECI | CCNNGG | 1 cut(s) | 73 |
| BssMI | GATC | 5 cut(s) | 367, 457, 808, 967, 1006 |
| Bst2UI | CCWGG | 1 cut(s) | 74 |
| Bst4CI | ACNGT | 4 cut(s) | 241, 465, 1221, 1242 |
| BstAFI | CTTAAG | 1 cut(s) | 178 |
| BstC8I | GCNNGC | 2 cut(s) | 8, 30 |
| BstDEI | CTNAG | 7 cut(s) | 317, 426, 490, 523, 827, 1019, 1184 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 144 |
| BstF5I | GGATG | 2 cut(s) | 356, 564 |
| BstKTI | GATC | 5 cut(s) | 370, 460, 811, 970, 1009 |
| BstMAI | GTCTC | 1 cut(s) | 789 |
| BstMBI | GATC | 5 cut(s) | 367, 457, 808, 967, 1006 |
| BstNI | CCWGG | 1 cut(s) | 74 |
| BstNSI | RCATGY | 1 cut(s) | 1162 |
| BstSCI | CCNGG | 1 cut(s) | 72 |
| BstSFI | CTRYAG | 2 cut(s) | 415, 461 |
| BstX2I | RGATCY | 3 cut(s) | 457, 808, 1006 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 773 |
| BstYI | RGATCY | 3 cut(s) | 457, 808, 1006 |
| Bsu36I | CCTNAGG | 1 cut(s) | 426 |
| BsuI | GTATCC | 1 cut(s) | 813 |
| BsuRI | GGCC | 1 cut(s) | 254 |
| BtsCI | GGATG | 2 cut(s) | 356, 564 |
| Cac8I | GCNNGC | 2 cut(s) | 8, 30 |
| Cfr13I | GGNCC | 3 cut(s) | 200, 704, 1061 |
| Csp6I | GTAC | 4 cut(s) | 175, 535, 749, 832 |
| CviAII | CATG | 2 cut(s) | 91, 1159 |
| CviQI | GTAC | 4 cut(s) | 175, 535, 749, 832 |
| DdeI | CTNAG | 7 cut(s) | 317, 426, 490, 523, 827, 1019, 1184 |
| DpnI | GATC | 5 cut(s) | 369, 459, 810, 969, 1008 |
| DpnII | GATC | 5 cut(s) | 367, 457, 808, 967, 1006 |
| Eco47I | GGWCC | 3 cut(s) | 200, 704, 1061 |
| Eco57I | CTGAAG | 2 cut(s) | 267, 1055 |
| Eco81I | CCTNAGG | 1 cut(s) | 426 |
| Eco88I | CYCGRG | 1 cut(s) | 713 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 144 |
| EcoO109I | RGGNCCY | 1 cut(s) | 200 |
| EcoRII | CCWGG | 1 cut(s) | 72 |
| EcoT22I | ATGCAT | 1 cut(s) | 949 |
| FaeI | CATG | 2 cut(s) | 94, 1162 |
| FaqI | GGGAC | 2 cut(s) | 882, 1027 |
| FatI | CATG | 2 cut(s) | 90, 1158 |
| FauI | CCCGC | 1 cut(s) | 895 |
| FokI | GGATG | 2 cut(s) | 343, 551 |
| FspBI | CTAG | 2 cut(s) | 50, 1250 |
| HaeIII | GGCC | 1 cut(s) | 254 |
| Hin1II | CATG | 2 cut(s) | 94, 1162 |
| HincII | GTYRAC | 1 cut(s) | 885 |
| HindII | GTYRAC | 1 cut(s) | 885 |
| HindIII | AAGCTT | 2 cut(s) | 529, 1144 |
| HinfI | GANTC | 8 cut(s) | 304, 475, 560, 997, 1015, 1030, 1133, 1180 |
| HpaI | GTTAAC | 1 cut(s) | 885 |
| HphI | GGTGA | 5 cut(s) | 377, 521, 860, 1039, 1166 |
| Hpy166II | GTNNAC | 2 cut(s) | 885, 1116 |
| Hpy188I | TCNGA | 7 cut(s) | 286, 559, 746, 952, 1035, 1089, 1185 |
| Hpy188III | TCNNGA | 8 cut(s) | 50, 140, 755, 788, 806, 812, 1001, 1205 |
| Hpy8I | GTNNAC | 2 cut(s) | 885, 1116 |
| HpyAV | CCTTC | 5 cut(s) | 47, 79, 291, 395, 1268 |
| HpyCH4III | ACNGT | 4 cut(s) | 241, 465, 1221, 1242 |
| HpyCH4V | TGCA | 9 cut(s) | 313, 356, 417, 607, 654, 732, 947, 1082, 1246 |
| HpyF3I | CTNAG | 7 cut(s) | 317, 426, 490, 523, 827, 1019, 1184 |
| Hsp92II | CATG | 2 cut(s) | 94, 1162 |
| KspAI | GTTAAC | 1 cut(s) | 885 |
| Kzo9I | GATC | 5 cut(s) | 367, 457, 808, 967, 1006 |
| LweI | GCATC | 3 cut(s) | 365, 956, 1091 |
| MaeI | CTAG | 2 cut(s) | 50, 1250 |
| MaeIII | GTNAC | 4 cut(s) | 509, 905, 1154, 1277 |
| MalI | GATC | 5 cut(s) | 369, 459, 810, 969, 1008 |
| MboI | GATC | 5 cut(s) | 367, 457, 808, 967, 1006 |
| MboII | GAAGA | 3 cut(s) | 362, 966, 1016 |
| MfeI | CAATTG | 2 cut(s) | 600, 767 |
| MflI | RGATCY | 3 cut(s) | 457, 808, 1006 |
| MlyI | GAGTC | 4 cut(s) | 298, 554, 1009, 1142 |
| MmeI | TCCRAC | 2 cut(s) | 521, 582 |
| MnlI | CCTC | 6 cut(s) | 147, 219, 548, 650, 902, 1081 |
| Mph1103I | ATGCAT | 1 cut(s) | 949 |
| MseI | TTAA | 6 cut(s) | 179, 194, 467, 884, 1128, 1256 |
| MslI | CAYNNNNRTG | 1 cut(s) | 593 |
| MspCI | CTTAAG | 1 cut(s) | 178 |
| MspR9I | CCNGG | 1 cut(s) | 74 |
| MunI | CAATTG | 2 cut(s) | 600, 767 |
| Mva1269I | GAATGC | 2 cut(s) | 321, 683 |
| MvaI | CCWGG | 1 cut(s) | 74 |
| NdeII | GATC | 5 cut(s) | 367, 457, 808, 967, 1006 |
| NlaIII | CATG | 2 cut(s) | 94, 1162 |
| NlaIV | GGNNCC | 1 cut(s) | 764 |
| NmuCI | GTSAC | 2 cut(s) | 509, 1154 |
| NsiI | ATGCAT | 1 cut(s) | 949 |
| NspI | RCATGY | 1 cut(s) | 1162 |
| PciI | ACATGT | 1 cut(s) | 1158 |
| PctI | GAATGC | 2 cut(s) | 321, 683 |
| PfeI | GAWTC | 4 cut(s) | 475, 997, 1030, 1180 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 218, 938 |
| PleI | GAGTC | 4 cut(s) | 298, 554, 1009, 1141 |
| PpsI | GAGTC | 4 cut(s) | 298, 554, 1009, 1141 |
| PpuMI | RGGWCCY | 1 cut(s) | 200 |
| PscI | ACATGT | 1 cut(s) | 1158 |
| PshBI | ATTAAT | 1 cut(s) | 1128 |
| Psp5II | RGGWCCY | 1 cut(s) | 200 |
| Psp6I | CCWGG | 1 cut(s) | 72 |
| PspGI | CCWGG | 1 cut(s) | 72 |
| PspN4I | GGNNCC | 1 cut(s) | 764 |
| PspPI | GGNCC | 3 cut(s) | 200, 704, 1061 |
| PspPPI | RGGWCCY | 1 cut(s) | 200 |
| PstI | CTGCAG | 1 cut(s) | 419 |
| PsuI | RGATCY | 3 cut(s) | 457, 808, 1006 |
| RsaI | GTAC | 4 cut(s) | 176, 536, 750, 833 |
| RsaNI | GTAC | 4 cut(s) | 175, 535, 749, 832 |
| RseI | CAYNNNNRTG | 1 cut(s) | 593 |
| SaqAI | TTAA | 6 cut(s) | 179, 194, 467, 884, 1128, 1256 |
| Sau3AI | GATC | 5 cut(s) | 367, 457, 808, 967, 1006 |
| Sau96I | GGNCC | 3 cut(s) | 200, 704, 1061 |
| SchI | GAGTC | 4 cut(s) | 298, 554, 1009, 1142 |
| ScrFI | CCNGG | 1 cut(s) | 74 |
| SfaNI | GCATC | 3 cut(s) | 365, 956, 1091 |
| SfcI | CTRYAG | 2 cut(s) | 415, 461 |
| SinI | GGWCC | 3 cut(s) | 200, 704, 1061 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 593 |
| SmlI | CTYRAG | 2 cut(s) | 178, 786 |
| SmoI | CTYRAG | 2 cut(s) | 178, 786 |
| SsiI | CCGC | 1 cut(s) | 902 |
| SspMI | CTAG | 2 cut(s) | 50, 1250 |
| StyD4I | CCNGG | 1 cut(s) | 72 |
| TaaI | ACNGT | 4 cut(s) | 241, 465, 1221, 1242 |
| TaqI | TCGA | 1 cut(s) | 687 |
| TatI | WGTACW | 2 cut(s) | 174, 748 |
| TfiI | GAWTC | 4 cut(s) | 475, 997, 1030, 1180 |
| Tru1I | TTAA | 6 cut(s) | 179, 194, 467, 884, 1128, 1256 |
| Tru9I | TTAA | 6 cut(s) | 179, 194, 467, 884, 1128, 1256 |
| TseFI | GTSAC | 2 cut(s) | 509, 1154 |
| Tsp45I | GTSAC | 2 cut(s) | 509, 1154 |
| TspDTI | ATGAA | 1 cut(s) | 492 |
| TspGWI | ACGGA | 1 cut(s) | 530 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 218, 938 |
| Vha464I | CTTAAG | 1 cut(s) | 178 |
| VpaK11BI | GGWCC | 3 cut(s) | 200, 704, 1061 |
| VspI | ATTAAT | 1 cut(s) | 1128 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 144 |
| XapI | RAATTY | 3 cut(s) | 97, 954, 1209 |
| XbaI | TCTAGA | 1 cut(s) | 49 |
| XceI | RCATGY | 1 cut(s) | 1162 |
| XspI | CTAG | 2 cut(s) | 50, 1250 |
| Zsp2I | ATGCAT | 1 cut(s) | 949 |