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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 192 |
| Acc36I | ACCTGC | 1 cut(s) | 55 |
| AccI | GTMKAC | 2 cut(s) | 114, 186 |
| AciI | CCGC | 5 cut(s) | 135, 176, 405, 564, 576 |
| AclWI | GGATC | 1 cut(s) | 303 |
| AcyI | GRCGYC | 1 cut(s) | 189 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 91, 98, 445 |
| AgsI | TTSAA | 1 cut(s) | 25 |
| AjnI | CCWGG | 1 cut(s) | 557 |
| AluBI | AGCT | 2 cut(s) | 75, 457 |
| AluI | AGCT | 2 cut(s) | 75, 457 |
| Alw26I | GTCTC | 2 cut(s) | 73, 100 |
| AlwI | GGATC | 1 cut(s) | 303 |
| AoxI | GGCC | 1 cut(s) | 82 |
| ApeKI | GCWGC | 1 cut(s) | 38 |
| AspS9I | GGNCC | 2 cut(s) | 83, 101 |
| AsuC2I | CCSGG | 2 cut(s) | 268, 522 |
| AsuHPI | GGTGA | 3 cut(s) | 124, 151, 524 |
| AvaII | GGWCC | 1 cut(s) | 101 |
| BanII | GRGCYC | 1 cut(s) | 323 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 272, 304 |
| BbsI | GAAGAC | 1 cut(s) | 435 |
| BbvI | GCAGC | 1 cut(s) | 50 |
| BccI | CCATC | 6 cut(s) | 67, 94, 208, 220, 265, 512 |
| BceAI | ACGGC | 2 cut(s) | 328, 343 |
| BciT130I | CCWGG | 1 cut(s) | 559 |
| BcnI | CCSGG | 2 cut(s) | 268, 522 |
| BcoDI | GTCTC | 2 cut(s) | 73, 100 |
| BfaI | CTAG | 5 cut(s) | 8, 65, 119, 408, 613 |
| BfmI | CTRYAG | 1 cut(s) | 48 |
| BfuAI | ACCTGC | 1 cut(s) | 55 |
| BisI | GCNGC | 3 cut(s) | 39, 565, 576 |
| BlsI | GCNGC | 3 cut(s) | 40, 566, 577 |
| Bme1390I | CCNGG | 3 cut(s) | 268, 522, 559 |
| Bme18I | GGWCC | 1 cut(s) | 101 |
| BmgT120I | GGNCC | 2 cut(s) | 83, 101 |
| BmiI | GGNNCC | 3 cut(s) | 103, 276, 574 |
| BmrFI | CCNGG | 3 cut(s) | 268, 522, 559 |
| BmsI | GCATC | 1 cut(s) | 159 |
| BpiI | GAAGAC | 1 cut(s) | 435 |
| BpmI | CTGGAG | 2 cut(s) | 55, 591 |
| BpuMI | CCSGG | 2 cut(s) | 268, 522 |
| BsaHI | GRCGYC | 1 cut(s) | 189 |
| BsaI | GGTCTC | 1 cut(s) | 100 |
| BsaJI | CCNNGG | 1 cut(s) | 266 |
| BsaWI | WCCGGW | 3 cut(s) | 91, 98, 142 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 247, 277, 502, 532 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 91, 98, 445 |
| Bse118I | RCCGGY | 1 cut(s) | 161 |
| Bse1I | ACTGG | 5 cut(s) | 85, 182, 352, 394, 574 |
| Bse3DI | GCAATG | 1 cut(s) | 215 |
| BseBI | CCWGG | 1 cut(s) | 559 |
| BseDI | CCNNGG | 1 cut(s) | 266 |
| BseGI | GGATG | 3 cut(s) | 200, 276, 512 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 91, 98, 445 |
| BseMI | GCAATG | 1 cut(s) | 215 |
| BseMII | CTCAG | 1 cut(s) | 485 |
| BseNI | ACTGG | 5 cut(s) | 85, 182, 352, 394, 574 |
| BseRI | GAGGAG | 1 cut(s) | 252 |
| BseXI | GCAGC | 1 cut(s) | 50 |
| BseYI | CCCAGC | 1 cut(s) | 417 |
| Bsh1285I | CGRYCG | 1 cut(s) | 526 |
| BshFI | GGCC | 1 cut(s) | 84 |
| BsiEI | CGRYCG | 1 cut(s) | 526 |
| BsiSI | CCGG | 7 cut(s) | 92, 99, 143, 162, 268, 522, 579 |
| BslFI | GGGAC | 1 cut(s) | 87 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 91, 98, 445 |
| BsmAI | GTCTC | 2 cut(s) | 73, 100 |
| BsmFI | GGGAC | 1 cut(s) | 87 |
| BsnI | GGCC | 1 cut(s) | 84 |
| Bso31I | GGTCTC | 1 cut(s) | 100 |
| Bsp1286I | GDGCHC | 1 cut(s) | 323 |
| Bsp143I | GATC | 3 cut(s) | 308, 366, 422 |
| BspACI | CCGC | 5 cut(s) | 135, 176, 405, 564, 576 |
| BspANI | GGCC | 1 cut(s) | 84 |
| BspCNI | CTCAG | 1 cut(s) | 486 |
| BspLI | GGNNCC | 3 cut(s) | 103, 276, 574 |
| BspMAI | CTGCAG | 1 cut(s) | 52 |
| BspMI | ACCTGC | 1 cut(s) | 55 |
| BspPI | GGATC | 1 cut(s) | 303 |
| BspTNI | GGTCTC | 1 cut(s) | 100 |
| BsrDI | GCAATG | 1 cut(s) | 215 |
| BsrFI | RCCGGY | 1 cut(s) | 161 |
| BsrI | ACTGG | 5 cut(s) | 85, 182, 352, 394, 574 |
| BssAI | RCCGGY | 1 cut(s) | 161 |
| BssECI | CCNNGG | 1 cut(s) | 266 |
| BssMI | GATC | 3 cut(s) | 308, 366, 422 |
| BssNAI | GTATAC | 1 cut(s) | 115 |
| BssNI | GRCGYC | 1 cut(s) | 189 |
| Bst1107I | GTATAC | 1 cut(s) | 115 |
| Bst2UI | CCWGG | 1 cut(s) | 559 |
| Bst4CI | ACNGT | 2 cut(s) | 491, 536 |
| Bst6I | CTCTTC | 1 cut(s) | 370 |
| BstACI | GRCGYC | 1 cut(s) | 189 |
| BstC8I | GCNNGC | 6 cut(s) | 18, 52, 222, 226, 451, 455 |
| BstDEI | CTNAG | 1 cut(s) | 494 |
| BstEII | GGTNACC | 1 cut(s) | 157 |
| BstF5I | GGATG | 3 cut(s) | 200, 276, 512 |
| BstKTI | GATC | 3 cut(s) | 311, 369, 425 |
| BstMAI | GTCTC | 2 cut(s) | 73, 100 |
| BstMBI | GATC | 3 cut(s) | 308, 366, 422 |
| BstMCI | CGRYCG | 1 cut(s) | 526 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 47, 81, 217, 484 |
| BstNI | CCWGG | 1 cut(s) | 559 |
| BstNSI | RCATGY | 1 cut(s) | 20 |
| BstPI | GGTNACC | 1 cut(s) | 157 |
| BstSCI | CCNGG | 3 cut(s) | 266, 520, 557 |
| BstSFI | CTRYAG | 1 cut(s) | 48 |
| BstV1I | GCAGC | 1 cut(s) | 50 |
| BstV2I | GAAGAC | 1 cut(s) | 435 |
| BstZ17I | GTATAC | 1 cut(s) | 115 |
| BsuRI | GGCC | 1 cut(s) | 84 |
| BtsCI | GGATG | 3 cut(s) | 200, 276, 512 |
| BtsIMutI | CAGTG | 2 cut(s) | 78, 567 |
| BveI | ACCTGC | 1 cut(s) | 55 |
| Cac8I | GCNNGC | 6 cut(s) | 18, 52, 222, 226, 451, 455 |
| Cfr10I | RCCGGY | 1 cut(s) | 161 |
| Cfr13I | GGNCC | 2 cut(s) | 83, 101 |
| CseI | GACGC | 1 cut(s) | 440 |
| CviAII | CATG | 2 cut(s) | 17, 30 |
| DdeI | CTNAG | 1 cut(s) | 494 |
| DpnI | GATC | 3 cut(s) | 310, 368, 424 |
| DpnII | GATC | 3 cut(s) | 308, 366, 422 |
| Eam1104I | CTCTTC | 1 cut(s) | 370 |
| EarI | CTCTTC | 1 cut(s) | 370 |
| Eco24I | GRGCYC | 1 cut(s) | 323 |
| Eco31I | GGTCTC | 1 cut(s) | 100 |
| Eco47I | GGWCC | 1 cut(s) | 101 |
| Eco91I | GGTNACC | 1 cut(s) | 157 |
| EcoO65I | GGTNACC | 1 cut(s) | 157 |
| EcoRII | CCWGG | 1 cut(s) | 557 |
| EcoT38I | GRGCYC | 1 cut(s) | 323 |
| FaeI | CATG | 2 cut(s) | 20, 33 |
| FaiI | YATR | 5 cut(s) | 18, 31, 36, 115, 289 |
| FaqI | GGGAC | 1 cut(s) | 87 |
| FatI | CATG | 2 cut(s) | 16, 29 |
| FblI | GTMKAC | 2 cut(s) | 114, 186 |
| Fnu4HI | GCNGC | 3 cut(s) | 39, 565, 576 |
| FokI | GGATG | 3 cut(s) | 187, 283, 499 |
| FriOI | GRGCYC | 1 cut(s) | 323 |
| Fsp4HI | GCNGC | 3 cut(s) | 39, 565, 576 |
| FspBI | CTAG | 5 cut(s) | 8, 65, 119, 408, 613 |
| GluI | GCNGC | 3 cut(s) | 39, 565, 576 |
| GsaI | CCCAGC | 1 cut(s) | 421 |
| GsuI | CTGGAG | 2 cut(s) | 55, 591 |
| HaeIII | GGCC | 1 cut(s) | 84 |
| HapII | CCGG | 7 cut(s) | 92, 99, 143, 162, 268, 522, 579 |
| HgaI | GACGC | 1 cut(s) | 440 |
| Hin1I | GRCGYC | 1 cut(s) | 189 |
| Hin1II | CATG | 2 cut(s) | 20, 33 |
| HindIII | AAGCTT | 1 cut(s) | 455 |
| HpaII | CCGG | 7 cut(s) | 92, 99, 143, 162, 268, 522, 579 |
| HphI | GGTGA | 3 cut(s) | 124, 151, 524 |
| Hpy166II | GTNNAC | 3 cut(s) | 115, 187, 539 |
| Hpy188I | TCNGA | 5 cut(s) | 194, 279, 308, 427, 495 |
| Hpy8I | GTNNAC | 3 cut(s) | 115, 187, 539 |
| Hpy99I | CGWCG | 4 cut(s) | 194, 328, 364, 367 |
| HpyAV | CCTTC | 1 cut(s) | 31 |
| HpyCH4III | ACNGT | 2 cut(s) | 491, 536 |
| HpyCH4IV | ACGT | 1 cut(s) | 189 |
| HpyCH4V | TGCA | 4 cut(s) | 16, 38, 50, 453 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 47, 81, 217, 484 |
| HpyF3I | CTNAG | 1 cut(s) | 494 |
| HpySE526I | ACGT | 1 cut(s) | 189 |
| Hsp92I | GRCGYC | 1 cut(s) | 189 |
| Hsp92II | CATG | 2 cut(s) | 20, 33 |
| Kzo9I | GATC | 3 cut(s) | 308, 366, 422 |
| LmnI | GCTCC | 2 cut(s) | 80, 572 |
| Lsp1109I | GCAGC | 1 cut(s) | 50 |
| LweI | GCATC | 1 cut(s) | 159 |
| MaeI | CTAG | 5 cut(s) | 8, 65, 119, 408, 613 |
| MaeII | ACGT | 1 cut(s) | 189 |
| MaeIII | GTNAC | 1 cut(s) | 157 |
| MalI | GATC | 3 cut(s) | 310, 368, 424 |
| MboI | GATC | 3 cut(s) | 308, 366, 422 |
| MboII | GAAGA | 2 cut(s) | 387, 440 |
| MhlI | GDGCHC | 1 cut(s) | 323 |
| MmeI | TCCRAC | 1 cut(s) | 172 |
| MnlI | CCTC | 9 cut(s) | 118, 148, 256, 270, 273, 347, 424, 528, 600 |
| MspA1I | CMGCKG | 1 cut(s) | 137 |
| MspI | CCGG | 7 cut(s) | 92, 99, 143, 162, 268, 522, 579 |
| MspR9I | CCNGG | 3 cut(s) | 268, 522, 559 |
| MvaI | CCWGG | 1 cut(s) | 559 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 47, 81, 217, 484 |
| NciI | CCSGG | 2 cut(s) | 268, 522 |
| NdeII | GATC | 3 cut(s) | 308, 366, 422 |
| NlaIII | CATG | 2 cut(s) | 20, 33 |
| NlaIV | GGNNCC | 3 cut(s) | 103, 276, 574 |
| NmuCI | GTSAC | 1 cut(s) | 157 |
| NspI | RCATGY | 1 cut(s) | 20 |
| PaeI | GCATGC | 1 cut(s) | 20 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 362, 532 |
| PkrI | GCNGC | 3 cut(s) | 40, 566, 577 |
| Psp6I | CCWGG | 1 cut(s) | 557 |
| PspEI | GGTNACC | 1 cut(s) | 157 |
| PspFI | CCCAGC | 1 cut(s) | 417 |
| PspGI | CCWGG | 1 cut(s) | 557 |
| PspN4I | GGNNCC | 3 cut(s) | 103, 276, 574 |
| PspPI | GGNCC | 2 cut(s) | 83, 101 |
| PstI | CTGCAG | 1 cut(s) | 52 |
| SatI | GCNGC | 3 cut(s) | 39, 565, 576 |
| Sau3AI | GATC | 3 cut(s) | 308, 366, 422 |
| Sau96I | GGNCC | 2 cut(s) | 83, 101 |
| SbfI | CCTGCAGG | 1 cut(s) | 52 |
| ScrFI | CCNGG | 3 cut(s) | 268, 522, 559 |
| SdaI | CCTGCAGG | 1 cut(s) | 52 |
| SduI | GDGCHC | 1 cut(s) | 323 |
| SfaNI | GCATC | 1 cut(s) | 159 |
| SfcI | CTRYAG | 1 cut(s) | 48 |
| SinI | GGWCC | 1 cut(s) | 101 |
| SphI | GCATGC | 1 cut(s) | 20 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 52 |
| SsiI | CCGC | 5 cut(s) | 135, 176, 405, 564, 576 |
| SspMI | CTAG | 5 cut(s) | 8, 65, 119, 408, 613 |
| StyD4I | CCNGG | 3 cut(s) | 266, 520, 557 |
| TaaI | ACNGT | 2 cut(s) | 491, 536 |
| TaiI | ACGT | 1 cut(s) | 192 |
| TaqI | TCGA | 2 cut(s) | 326, 365 |
| TauI | GCSGC | 2 cut(s) | 567, 578 |
| TscAI | CASTG | 2 cut(s) | 85, 574 |
| TseFI | GTSAC | 1 cut(s) | 157 |
| TseI | GCWGC | 1 cut(s) | 38 |
| Tsp45I | GTSAC | 1 cut(s) | 157 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 2 cut(s) | 85, 574 |
| VpaK11BI | GGWCC | 1 cut(s) | 101 |
| XceI | RCATGY | 1 cut(s) | 20 |
| XmiI | GTMKAC | 2 cut(s) | 114, 186 |
| XspI | CTAG | 5 cut(s) | 8, 65, 119, 408, 613 |
| ZraI | GACGTC | 1 cut(s) | 190 |