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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 524 |
| AccB1I | GGYRCC | 1 cut(s) | 263 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 641 |
| AciI | CCGC | 2 cut(s) | 605, 950 |
| AclWI | GGATC | 1 cut(s) | 168 |
| AcoI | YGGCCR | 1 cut(s) | 74 |
| AcsI | RAATTY | 4 cut(s) | 24, 555, 657, 912 |
| AcuI | CTGAAG | 1 cut(s) | 758 |
| AfaI | GTAC | 1 cut(s) | 239 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 604, 641 |
| AflIII | ACRYGT | 1 cut(s) | 861 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 725, 757 |
| AluBI | AGCT | 7 cut(s) | 203, 234, 423, 441, 640, 849, 1002 |
| AluI | AGCT | 7 cut(s) | 203, 234, 423, 441, 640, 849, 1002 |
| Alw26I | GTCTC | 1 cut(s) | 12 |
| AlwI | GGATC | 1 cut(s) | 168 |
| Ama87I | CYCGRG | 1 cut(s) | 416 |
| AoxI | GGCC | 1 cut(s) | 74 |
| ApeKI | GCWGC | 1 cut(s) | 534 |
| ApoI | RAATTY | 4 cut(s) | 24, 555, 657, 912 |
| AspS9I | GGNCC | 2 cut(s) | 407, 764 |
| AsuC2I | CCSGG | 1 cut(s) | 56 |
| AsuHPI | GGTGA | 6 cut(s) | 80, 224, 563, 742, 758, 869 |
| AvaI | CYCGRG | 1 cut(s) | 416 |
| AvaII | GGWCC | 2 cut(s) | 407, 764 |
| AxyI | CCTNAGG | 1 cut(s) | 129 |
| BanI | GGYRCC | 1 cut(s) | 263 |
| BbvI | GCAGC | 1 cut(s) | 546 |
| BccI | CCATC | 2 cut(s) | 275, 997 |
| BciVI | GTATCC | 1 cut(s) | 516 |
| BcnI | CCSGG | 1 cut(s) | 56 |
| BcoDI | GTCTC | 1 cut(s) | 12 |
| BfaI | CTAG | 2 cut(s) | 953, 1003 |
| BfuI | GTATCC | 1 cut(s) | 516 |
| BisI | GCNGC | 1 cut(s) | 535 |
| BlsI | GCNGC | 1 cut(s) | 536 |
| Bme1390I | CCNGG | 1 cut(s) | 56 |
| Bme18I | GGWCC | 2 cut(s) | 407, 764 |
| BmeT110I | CYCGRG | 1 cut(s) | 416 |
| BmgT120I | GGNCC | 2 cut(s) | 407, 764 |
| BmiI | GGNNCC | 3 cut(s) | 198, 265, 467 |
| BmrFI | CCNGG | 1 cut(s) | 56 |
| BmrI | ACTGGG | 1 cut(s) | 577 |
| BmsI | GCATC | 2 cut(s) | 68, 794 |
| BmuI | ACTGGG | 1 cut(s) | 577 |
| BpmI | CTGGAG | 1 cut(s) | 149 |
| BpuEI | CTTGAG | 2 cut(s) | 474, 995 |
| BpuMI | CCSGG | 1 cut(s) | 56 |
| BsaJI | CCNNGG | 1 cut(s) | 358 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 709, 739 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 604, 641 |
| Bse1I | ACTGG | 4 cut(s) | 166, 481, 572, 625 |
| Bse21I | CCTNAGG | 1 cut(s) | 129 |
| Bse3DI | GCAATG | 2 cut(s) | 487, 652 |
| BseDI | CCNNGG | 1 cut(s) | 358 |
| BseGI | GGATG | 2 cut(s) | 59, 267 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 604, 641 |
| BseMI | GCAATG | 2 cut(s) | 487, 652 |
| BseMII | CTCAG | 2 cut(s) | 11, 878 |
| BseNI | ACTGG | 4 cut(s) | 166, 481, 572, 625 |
| BseXI | GCAGC | 1 cut(s) | 546 |
| BshFI | GGCC | 1 cut(s) | 76 |
| BshNI | GGYRCC | 1 cut(s) | 263 |
| BsiHKCI | CYCGRG | 1 cut(s) | 416 |
| BsiSI | CCGG | 2 cut(s) | 56, 261 |
| BslFI | GGGAC | 2 cut(s) | 585, 931 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 604, 641 |
| BsmAI | GTCTC | 1 cut(s) | 12 |
| BsmFI | GGGAC | 2 cut(s) | 585, 931 |
| BsmI | GAATGC | 1 cut(s) | 386 |
| BsnI | GGCC | 1 cut(s) | 76 |
| BsoBI | CYCGRG | 1 cut(s) | 416 |
| Bsp143I | GATC | 4 cut(s) | 70, 160, 670, 709 |
| BspACI | CCGC | 2 cut(s) | 605, 950 |
| BspANI | GGCC | 1 cut(s) | 76 |
| BspCNI | CTCAG | 2 cut(s) | 12, 879 |
| BspLI | GGNNCC | 3 cut(s) | 198, 265, 467 |
| BspPI | GGATC | 1 cut(s) | 168 |
| BspT107I | GGYRCC | 1 cut(s) | 263 |
| BsrDI | GCAATG | 2 cut(s) | 487, 652 |
| BsrI | ACTGG | 4 cut(s) | 166, 481, 572, 625 |
| BssECI | CCNNGG | 1 cut(s) | 358 |
| BssMI | GATC | 4 cut(s) | 70, 160, 670, 709 |
| Bst4CI | ACNGT | 2 cut(s) | 924, 945 |
| Bst6I | CTCTTC | 1 cut(s) | 682 |
| BstDEI | CTNAG | 6 cut(s) | 20, 129, 226, 530, 722, 887 |
| BstF5I | GGATG | 2 cut(s) | 59, 267 |
| BstKTI | GATC | 4 cut(s) | 73, 163, 673, 712 |
| BstMAI | GTCTC | 1 cut(s) | 12 |
| BstMBI | GATC | 4 cut(s) | 70, 160, 670, 709 |
| BstNSI | RCATGY | 1 cut(s) | 865 |
| BstSCI | CCNGG | 1 cut(s) | 54 |
| BstV1I | GCAGC | 1 cut(s) | 546 |
| BstX2I | RGATCY | 1 cut(s) | 160 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 476 |
| BstYI | RGATCY | 1 cut(s) | 160 |
| Bsu36I | CCTNAGG | 1 cut(s) | 129 |
| BsuI | GTATCC | 1 cut(s) | 516 |
| BsuRI | GGCC | 1 cut(s) | 76 |
| BtsCI | GGATG | 2 cut(s) | 59, 267 |
| Cfr13I | GGNCC | 2 cut(s) | 407, 764 |
| Csp6I | GTAC | 1 cut(s) | 238 |
| CviAII | CATG | 2 cut(s) | 713, 862 |
| CviQI | GTAC | 1 cut(s) | 238 |
| DdeI | CTNAG | 6 cut(s) | 20, 129, 226, 530, 722, 887 |
| DpnI | GATC | 4 cut(s) | 72, 162, 672, 711 |
| DpnII | GATC | 4 cut(s) | 70, 160, 670, 709 |
| EaeI | YGGCCR | 1 cut(s) | 74 |
| Eam1104I | CTCTTC | 1 cut(s) | 682 |
| EarI | CTCTTC | 1 cut(s) | 682 |
| Eco47I | GGWCC | 2 cut(s) | 407, 764 |
| Eco57I | CTGAAG | 1 cut(s) | 758 |
| Eco81I | CCTNAGG | 1 cut(s) | 129 |
| Eco88I | CYCGRG | 1 cut(s) | 416 |
| EcoRI | GAATTC | 1 cut(s) | 24 |
| FaeI | CATG | 2 cut(s) | 716, 865 |
| FaqI | GGGAC | 2 cut(s) | 585, 931 |
| FatI | CATG | 2 cut(s) | 712, 861 |
| FauI | CCCGC | 2 cut(s) | 598, 957 |
| Fnu4HI | GCNGC | 1 cut(s) | 535 |
| FokI | GGATG | 2 cut(s) | 46, 254 |
| Fsp4HI | GCNGC | 1 cut(s) | 535 |
| FspBI | CTAG | 2 cut(s) | 953, 1003 |
| GluI | GCNGC | 1 cut(s) | 535 |
| GsuI | CTGGAG | 1 cut(s) | 149 |
| HaeIII | GGCC | 1 cut(s) | 76 |
| HapII | CCGG | 2 cut(s) | 56, 261 |
| Hin1II | CATG | 2 cut(s) | 716, 865 |
| HincII | GTYRAC | 1 cut(s) | 588 |
| HindII | GTYRAC | 1 cut(s) | 588 |
| HindIII | AAGCTT | 2 cut(s) | 232, 847 |
| HinfI | GANTC | 5 cut(s) | 178, 700, 733, 836, 883 |
| HpaI | GTTAAC | 1 cut(s) | 588 |
| HpaII | CCGG | 2 cut(s) | 56, 261 |
| HphI | GGTGA | 6 cut(s) | 80, 224, 563, 742, 758, 869 |
| Hpy166II | GTNNAC | 2 cut(s) | 588, 819 |
| Hpy188I | TCNGA | 4 cut(s) | 449, 738, 792, 888 |
| Hpy188III | TCNNGA | 5 cut(s) | 458, 491, 515, 704, 908 |
| Hpy8I | GTNNAC | 2 cut(s) | 588, 819 |
| HpyAV | CCTTC | 2 cut(s) | 98, 455 |
| HpyCH4III | ACNGT | 2 cut(s) | 924, 945 |
| HpyCH4V | TGCA | 5 cut(s) | 16, 310, 435, 650, 785 |
| HpyF3I | CTNAG | 6 cut(s) | 20, 129, 226, 530, 722, 887 |
| Hsp92II | CATG | 2 cut(s) | 716, 865 |
| KspAI | GTTAAC | 1 cut(s) | 588 |
| Kzo9I | GATC | 4 cut(s) | 70, 160, 670, 709 |
| Lsp1109I | GCAGC | 1 cut(s) | 546 |
| LweI | GCATC | 2 cut(s) | 68, 794 |
| MaeI | CTAG | 2 cut(s) | 953, 1003 |
| MaeIII | GTNAC | 4 cut(s) | 212, 857, 965, 980 |
| MalI | GATC | 4 cut(s) | 72, 162, 672, 711 |
| MboI | GATC | 4 cut(s) | 70, 160, 670, 709 |
| MboII | GAAGA | 2 cut(s) | 669, 719 |
| MfeI | CAATTG | 2 cut(s) | 303, 470 |
| MflI | RGATCY | 1 cut(s) | 160 |
| MlyI | GAGTC | 1 cut(s) | 845 |
| MnlI | CCTC | 6 cut(s) | 251, 353, 605, 711, 784, 970 |
| MseI | TTAA | 4 cut(s) | 443, 587, 831, 959 |
| MslI | CAYNNNNRTG | 1 cut(s) | 296 |
| MspI | CCGG | 2 cut(s) | 56, 261 |
| MspR9I | CCNGG | 1 cut(s) | 56 |
| MunI | CAATTG | 2 cut(s) | 303, 470 |
| Mva1269I | GAATGC | 1 cut(s) | 386 |
| NciI | CCSGG | 1 cut(s) | 56 |
| NdeII | GATC | 4 cut(s) | 70, 160, 670, 709 |
| NlaIII | CATG | 2 cut(s) | 716, 865 |
| NlaIV | GGNNCC | 3 cut(s) | 198, 265, 467 |
| NmeAIII | GCCGAG | 1 cut(s) | 383 |
| NmuCI | GTSAC | 2 cut(s) | 212, 857 |
| NspI | RCATGY | 1 cut(s) | 865 |
| PciI | ACATGT | 1 cut(s) | 861 |
| PctI | GAATGC | 1 cut(s) | 386 |
| PfeI | GAWTC | 4 cut(s) | 178, 700, 733, 883 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 641 |
| PkrI | GCNGC | 1 cut(s) | 536 |
| PleI | GAGTC | 1 cut(s) | 844 |
| PpsI | GAGTC | 1 cut(s) | 844 |
| PscI | ACATGT | 1 cut(s) | 861 |
| PsiI | TTATAA | 1 cut(s) | 524 |
| PspN4I | GGNNCC | 3 cut(s) | 198, 265, 467 |
| PspPI | GGNCC | 2 cut(s) | 407, 764 |
| PsuI | RGATCY | 1 cut(s) | 160 |
| RsaI | GTAC | 1 cut(s) | 239 |
| RsaNI | GTAC | 1 cut(s) | 238 |
| RseI | CAYNNNNRTG | 1 cut(s) | 296 |
| SaqAI | TTAA | 4 cut(s) | 443, 587, 831, 959 |
| SatI | GCNGC | 1 cut(s) | 535 |
| Sau3AI | GATC | 4 cut(s) | 70, 160, 670, 709 |
| Sau96I | GGNCC | 2 cut(s) | 407, 764 |
| SchI | GAGTC | 1 cut(s) | 845 |
| ScrFI | CCNGG | 1 cut(s) | 56 |
| SfaNI | GCATC | 2 cut(s) | 68, 794 |
| SinI | GGWCC | 2 cut(s) | 407, 764 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 296 |
| SmlI | CTYRAG | 2 cut(s) | 489, 974 |
| SmoI | CTYRAG | 2 cut(s) | 489, 974 |
| SsiI | CCGC | 2 cut(s) | 605, 950 |
| SspMI | CTAG | 2 cut(s) | 953, 1003 |
| StyD4I | CCNGG | 1 cut(s) | 54 |
| TaaI | ACNGT | 2 cut(s) | 924, 945 |
| TaqI | TCGA | 1 cut(s) | 866 |
| TfiI | GAWTC | 4 cut(s) | 178, 700, 733, 883 |
| Tru1I | TTAA | 4 cut(s) | 443, 587, 831, 959 |
| Tru9I | TTAA | 4 cut(s) | 443, 587, 831, 959 |
| TseFI | GTSAC | 2 cut(s) | 212, 857 |
| TseI | GCWGC | 1 cut(s) | 534 |
| Tsp45I | GTSAC | 2 cut(s) | 212, 857 |
| TspDTI | ATGAA | 2 cut(s) | 17, 195 |
| TspGWI | ACGGA | 1 cut(s) | 233 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 641 |
| VpaK11BI | GGWCC | 2 cut(s) | 407, 764 |
| XapI | RAATTY | 4 cut(s) | 24, 555, 657, 912 |
| XceI | RCATGY | 1 cut(s) | 865 |
| XspI | CTAG | 2 cut(s) | 953, 1003 |