pycom08g15350

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
14981695 .. 14984805
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g15350.1

Sequence Viewer

Length: 3111 bp
ATGACATCTTTAGATTTTCATAAACTATGCCCTTTGGCTTATTGCCTAGTCTTATTCGTACAACTTTGTTCATCGCCAAGTTACTCTACTTTTGCTTCTGCTACTTCTACTACTGAAGCAGAAGCGCTTCTCAAATGGAAAGCCACCTTTCAAAACCATACCCACCTGCAAAATCTCACCTCGTGGGCTTACCTACCCGCTCATACAAAAGTAGCCCCATGCTTCTGGACTGGTATTTCATGCAATGTTGTTGGAAGTGTTAGTGTGATAAACCTTACTAATTTCGGGATACAAGGTACGCTACATGAGTTTTCATTCTTGTCTTTCCCCAATCTTCAATACCTTGATCGATCAGCTACAATTATCTCTTTGATGTCATTCCAGCTCAGATCAGTTCCCTCTCCAAACTCATCTATCTTGATCTTTCTAACAATTTGCTCAATGGTTCAATTCCAACATCCCTCGGTCGATCTCACAAACATTACCTTTCTCTATCTCCACCATAATAATCTTTCTAGCACAATTCCAAAAGTGATAGGGAAGTTGAAATCTCTTGCGACCCTAGAATTGTCTTATAACCAGCTCAACGGTTCAATCCCAACATCTCTAGGTCAGCTCACAAACCTTTCCACTCTCTATCTCTACACTAATAATCTTTCTGGCACTATTCCTAAAGAGATAAGGAACTTGAAATCCCTTGTGGACCTAGATTTGTCTGAGAATCAGCTTACTGGTTCAATCCCAACTTCCTTAGGTCAACTCACAAAACTTACCTATGTCCATCTCTTCACTAATAATCTTTCTGGCACTATTCCTAAAGAGATAGGGAAATTGAAATCTCTTGTGGACCTAGATTTGTCTAGGAATCAGCTCAATGGTTCAATCCCAATATCCCTCGGTGTTCTCACAAAACTTACCTCTATCAATCTCTTCACTAATAATCTTTCTGGCACTATTCCGAAAGAGATTGGGAAATTGAAATCTCTTATGGGGCTCAGTTTGTTCAAGAATCAGCTCAACGGTTCAATCCCAACATCCTTAGGTCAACTCACAAACCTTTCCACTCTCTATCTCTACACTAATAATCTTTCTGGCACTATTCCTAAAGAGATAGGGAACTTAAAATTCCTTGTGGACCTAGATTTGTCTGAGAATCAGCTTACTGGTTCAATCCCAACATCCCTAGGTCAGCTCACAAAACTTACCTATGTCTATCTCTTCACTAATAATCTTTCTGGCACCATTCCTAAAGAGATAGGGAACTTGAAATCCCTTGTGGACCTAGATTTGTCTCAGAATCAGCTCACTGGTTCAATCCCAACATCCCTATGTCAGCTCACAAAACTTACCTATGTCCGTCTCTTCACTAATAATCTTTCTAGTACTATTCCTAAAGAGATAGGGAATTTGAAGAAGTTGGCTATACTGCAATTGCATAGTAACCAATTAATAGGTTATTTGCCCCAAAATATTTGTTGTAGTGGACAACTCCAAAACCTTTCAGTGAGCAATAACCATTTGACAGGTGCAATCCCCAAAAGCTTGAAAACATGCAAGAGCTTAGTTAGAGTTCATCTTGAAAGGAACCAATTCACAGGCAATATATCAGAAGACTTTGGTGTTTATCCAAATCTTGATTTCATAGATATGAGTCACAATAAGTTTTATGGTGAAATTTCACAAAAATGGGGACAATGCGCACAACTAGAAACCTTACTAATTGTGGGAAACAACCTTATTGGTAGCATACCTCCCGAGATTGTCAATGCTGACAAAATCCATAGACTCGACCTTTCTTCAAATCACTTAGTTGGGGCCATTCCGAAGGAGTTCGGGAGAATGACATCTTTGCAGAAGTTGATGCTGAATGGAAACCAACTTTCAGGCTGTATACCTTCGGAATTTGGATTACTTATTGATCTTGAATATCTCGACTTGTCATCAAACAAATTAATTGGGTCAATTGCGAGCACATTAGGCGACTTTCTCAAATTGTACCATCTGAATCTGAGCAACAATCAATTTTCCAGAGGAATTCCATTGAAGTTGGAAAAGTTAGTTCAGTTGAACGAACTTGATTTAAGTCACAACTCACTTGAAGGTAGCATACCACCTGAAATTAGCAAAATGGAGAGTCTACAGACACTCAATCTTTCTCACAACAATCTTTCGGGTTTCATACCCTTAAGTTTTGAAGGCATGCATAGCTTGTCATATGTGGATGTATCTTACAATGAATTGGAAGGTCCCATTCCCAACAATAGAGCATTTCGACAAGCTTTGCCAGAAGCTTTACAAGGGAACAAAGGACTGTGTGGCGACGTTGAAGGTTTGCAATCTTGCACAGTTGGCCCAAGAAAGGACCGCAAATGGGTATTTGGAATCACATTCTCCCTTATAGTAGCAATTTTACTTCTTTCTGCTTTCTTTACAATTAAATTCATAGTGGAAAGAAAGAAGAAACATCTAGAAAGAGCAGAAAAATGCTTGCATGAAGAAATATCGTTTTCAGTTTTGAATTTTGATGGAAAGTCAATGTATGAGGAAATCATAAGGGCGACAGAAAATTTTGATTTCACATATTGCATTGGGAGCGGAGGACAAGGAAGCGTCTACAGAGCAAATTTGTCGAGTGACAACATAGTGGCTGTGAAAAAACTACATCAATTGTGGGATGGCGAGAAGAATTTGGAGACGGCATTCTTGAATGAAATAAGGGCACTAACAGAGATAAGACACCGGAATATTGTTAAGCTTTATGGTTTCTGTTCACACCATCAACACTCGTTCTTGGTGTACGAGTTTGTTGAAAGAGGTAGCTTGGCTACAATTTTGAGCAAAGATGAAGAAGCTAAAGAAGTAGGGTGGAGAAAAAGGGTTAATATTGTTAACGGTGTAGCTCATGCCTTGGCATACATGCACCACAATTGCATGCCACCAATTGTGCACCGGGACATTTCAACCAAGAATATTTTGTTGGATTCTACATATGAGGCCTCTGTTTCAGACTTTGGCACTGCTAAGTTTTTGAATCCAGACTCAACAACTTGGACTGCCGTTGTAGGCACATATGGGTATGTCGCACCAGGTAATATGTTTTCTTCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1037

Amino Acids

114.7

Weight (kDa)

7.98

Isoelectric Point (pI)

24.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 38 - 82 1e-06 Leucine rich repeat N-terminal domain
LRR_14 PF23598 159 - 264 8.1e-12 Leucine-rich repeat region
LRR_8 PF13855 160 - 219 3e-07 Leucine rich repeat
LRR_14 PF23598 237 - 361 2.4e-12 Leucine-rich repeat region
LRR_14 PF23598 365 - 454 4.1e-12 Leucine-rich repeat region
LRR_14 PF23598 429 - 526 4.1e-07 Leucine-rich repeat region
LRR_8 PF13855 496 - 555 8.1e-06 Leucine rich repeat
LRR_8 PF13855 568 - 627 7.2e-07 Leucine rich repeat
LRR_8 PF13855 688 - 747 3.5e-10 Leucine rich repeat
PK_Tyr_Ser-Thr PF07714 861 - 1015 2.3e-29 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 862 - 1029 4.1e-35 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08850 AT4G08850
fragaria_vesca FvH4_2g07670 FvH4_2g07680 FvH4_2g20750 FvH4_2g20750 FvH4_2g20790 FvH4_3g14180 FvH4_3g14180 FvH4_3g14230 FvH4_3g14330 FvH4_3g14340 FvH4_3g14340 FvH4_3g14360 FvH4_3g14370 FvH4_3g14371 FvH4_3g16410 FvH4_4g04540 FvH4_4g33281 FvH4_5g24120 FvH4_5g36290 FvH4_5g37480 FvH4_5g37490 FvH4_5g37510 FvH4_5g37510 FvH4_5g37520 FvH4_5g37560 FvH4_5g37580 FvH4_5g37590 FvH4_5g37590 FvH4_5g37590 FvH4_5g37790 FvH4_5g37800 FvH4_6g38120
malus_domestica MD00G1009600.v1.1 MD00G1061200.v1.1 MD00G1123900.v1.1 MD00G1124200.v1.1 MD00G1124500.v1.1 MD00G1124700.v1.1 MD00G1170400.v1.1 MD00G1170700.v1.1 MD01G1002100.v1.1 MD03G1036100.v1.1 MD04G1006600.v1.1 MD04G1006800.v1.1 MD04G1039700.v1.1 MD04G1039900.v1.1 MD05G1189800.v1.1 MD05G1190000.v1.1 MD05G1190200.v1.1 MD05G1190400.v1.1 MD05G1190600.v1.1 MD05G1190700.v1.1 MD05G1190800.v1.1 MD05G1190900.v1.1 MD05G1191200.v1.1 MD05G1191500.v1.1 MD08G1025100.v1.1 MD08G1025500.v1.1 MD08G1094500.v1.1 MD08G1094600.v1.1 MD08G1175000.v1.1 MD08G1175100.v1.1 MD08G1175200.v1.1 MD08G1175300.v1.1 MD08G1175400.v1.1 MD08G1178900.v1.1 MD08G1179000.v1.1 MD08G1179200.v1.1 MD09G1153000.v1.1 MD09G1153100.v1.1 MD09G1153200.v1.1 MD09G1153300.v1.1 MD09G1153400.v1.1 MD09G1153700.v1.1 MD09G1153800.v1.1 MD10G1178100.v1.1 MD10G1178200.v1.1 MD10G1214300.v1.1 MD10G1214500.v1.1 MD10G1214600.v1.1 MD10G1215200.v1.1 MD11G1221700.v1.1 MD12G1229500.v1.1 MD12G1229600.v1.1 MD12G1229700.v1.1 MD13G1018200.v1.1 MD15G1367500.v1.1 MD15G1367600.v1.1 MD15G1367700.v1.1 MD15G1367800.v1.1 MD15G1437200.v1.1 MD15G1437400.v1.1 MD17G1140300.v1.1 MD17G1140400.v1.1 MD17G1153200.v1.1
prunus_persica Prupe.1G510800_v2.0.a1 Prupe.1G513300_v2.0.a1 Prupe.1G513400_v2.0.a1 Prupe.1G514100_v2.0.a1 Prupe.1G514200_v2.0.a1 Prupe.1G515300_v2.0.a1 Prupe.1G515500_v2.0.a1 Prupe.1G515600_v2.0.a1 Prupe.1G515700_v2.0.a1 Prupe.1G515700_v2.0.a1 Prupe.1G515700_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G516000_v2.0.a1 Prupe.2G064900_v2.0.a1 Prupe.3G115800_v2.0.a1 Prupe.3G115800_v2.0.a1 Prupe.3G115800_v2.0.a1 Prupe.3G115900_v2.0.a1 Prupe.3G116000_v2.0.a1 Prupe.3G157900_v2.0.a1 Prupe.3G171200_v2.0.a1 Prupe.3G171300_v2.0.a1 Prupe.4G128800_v2.0.a1 Prupe.4G129000_v2.0.a1 Prupe.4G268100_v2.0.a1 Prupe.4G283700_v2.0.a1 Prupe.6G161700_v2.0.a1 Prupe.6G161700_v2.0.a1 Prupe.6G161700_v2.0.a1 Prupe.7G014300_v2.0.a1 Prupe.7G014400_v2.0.a1 Prupe.8G060800_v2.0.a1 Prupe.8G061100_v2.0.a1 Prupe.8G217000_v2.0.a1 Prupe.8G217100_v2.0.a1 Prupe.8G217100_v2.0.a1 Prupe.8G217200_v2.0.a1 Prupe.8G217300_v2.0.a1 Prupe.8G217400_v2.0.a1 Prupe.8G217400_v2.0.a1 Prupe.8G217600_v2.0.a1 Prupe.8G217700_v2.0.a1 Prupe.8G226900_v2.0.a1
pyrus_communis pycom04g03280 pycom04g03330 pycom05g17120 pycom05g17140 pycom05g17490 pycom05g17510 pycom05g17540 pycom05g17550 pycom05g17570 pycom05g17600 pycom05g17610 pycom05g17640 pycom05g17720 pycom05g17730 pycom05g17780 pycom05g17790 pycom05g17820 pycom08g15350 pycom08g15540 pycom08g15550 pycom08g15560 pycom09g07250 pycom09g07260 pycom10g02200 pycom10g15400 pycom10g18060 pycom10g18090 pycom10g18100 pycom10g18130 pycom10g18180 pycom10g18200 pycom13g01560 pycom13g14430 pycom14g10720 pycom14g10740 pycom15g32940 pycom15g32950 pycom15g32960 pycom15g32970 pycom15g38570 pycom15g38580 pycom17g13340 pycom17g13350 pycom17g13360
rosa_chinensis RchiOBHm_Chr0c16g0499671 RchiOBHm_Chr0c16g0499681 RchiOBHm_Chr0c16g0499691 RchiOBHm_Chr0c16g0499701 RchiOBHm_Chr0c16g0499741 RchiOBHm_Chr0c16g0499761 RchiOBHm_Chr0c16g0499771 RchiOBHm_Chr0c16g0499801 RchiOBHm_Chr0c16g0499831 RchiOBHm_Chr0c16g0499841 RchiOBHm_Chr0c16g0499881 RchiOBHm_Chr0c16g0499891 RchiOBHm_Chr0c16g0499931 RchiOBHm_Chr2g0151181 RchiOBHm_Chr2g0151221 RchiOBHm_Chr2g0151291 RchiOBHm_Chr2g0151311 RchiOBHm_Chr2g0151331 RchiOBHm_Chr2g0151341 RchiOBHm_Chr3g0483131 RchiOBHm_Chr3g0491341 RchiOBHm_Chr3g0493861 RchiOBHm_Chr3g0493881 RchiOBHm_Chr3g0493891 RchiOBHm_Chr4g0403001 RchiOBHm_Chr4g0409861 RchiOBHm_Chr4g0409901 RchiOBHm_Chr4g0409921 RchiOBHm_Chr4g0409931 RchiOBHm_Chr4g0412541 RchiOBHm_Chr4g0442461 RchiOBHm_Chr5g0021681 RchiOBHm_Chr5g0021711 RchiOBHm_Chr5g0023521 RchiOBHm_Chr5g0023721 RchiOBHm_Chr5g0023981 RchiOBHm_Chr5g0024241 RchiOBHm_Chr5g0033191 RchiOBHm_Chr5g0070881 RchiOBHm_Chr5g0070901 RchiOBHm_Chr6g0286931 RchiOBHm_Chr6g0286941 RchiOBHm_Chr6g0286951 RchiOBHm_Chr6g0287011 RchiOBHm_Chr6g0287031 RchiOBHm_Chr6g0287041 RchiOBHm_Chr6g0287061 RchiOBHm_Chr6g0287071 RchiOBHm_Chr6g0287081 RchiOBHm_Chr6g0287091 RchiOBHm_Chr6g0287101 RchiOBHm_Chr6g0287141 RchiOBHm_Chr6g0287151 RchiOBHm_Chr6g0287171 RchiOBHm_Chr6g0311671 RchiOBHm_Chr7g0213681 RchiOBHm_Chr7g0213751 RchiOBHm_Chr7g0213791 RchiOBHm_Chr7g0213801 RchiOBHm_Chr7g0221461 RchiOBHm_Chr7g0221481 RchiOBHm_Chr7g0221491 RchiOBHm_Chr7g0221501 RchiOBHm_Chr7g0221511 RchiOBHm_Chr7g0233271 RchiOBHm_Chr7g0238311 RchiOBHm_Chr7g0239091 RchiOBHm_Chr7g0239121 RchiOBHm_Chr7g0239131 RchiOBHm_Chr7g0239151 RchiOBHm_Chr7g0239161 RchiOBHm_Chr7g0239171 RchiOBHm_Chr7g0239211 RchiOBHm_Chr7g0239221 RchiOBHm_Chr7g0239231 RchiOBHm_Chr7g0239251 RchiOBHm_Chr7g0239641 RchiOBHm_Chr7g0239661 RchiOBHm_Chr7g0239771 RchiOBHm_Chr7g0239791
rosa_laevigata RLG00000000731 RLG00000000733 RLG00000000736 RLG00000000743 RLG00000000744 RLG00000000767 RLG00000000768 RLG00000000769 RLG00000000771 RLG00000000772 RLG00000000773 RLG00000000774 RLG00000000776 RLG00000000777 RLG00000000778 RLG00000000779 RLG00000000780 RLG00000000781 RLG00000000783 RLG00000000920 RLG00000000922 RLG00000000926 RLG00000000930 RLG00000001280 RLG00000001281 RLG00000002778 RLG00000002783 RLG00000002784 RLG00000002789 RLG00000002791 RLG00000002793 RLG00000006009 RLG00000008276 RLG00000008277 RLG00000008513 RLG00000008514 RLG00000008516 RLG00000008517 RLG00000008518 RLG00000008519 RLG00000012519 RLG00000012520 RLG00000012521 RLG00000012523 RLG00000012525 RLG00000012530 RLG00000013262 RLG00000013263 RLG00000013859 RLG00000013861 RLG00000014074 RLG00000018176 RLG00000019276 RLG00000020539 RLG00000020542 RLG00000022691 RLG00000029077 RLG00000029178 RLG00000029180 RLG00000029181 RLG00000032621 RLG00000032622 RLG00000032723 RLG00000032731 RLG00000032753 RLG00000032783 RLG00000032784 RLG00000032786 RLG00000033018 RLG00000033277 RLG00000033342 RLG00000033343 RLG00000034125 RLG00000036163 RLG00000036167 RLG00000036168
rosa_multiflora Rmu_co8056540.1_g000001 Rmu_co8091752.1_g000001 Rmu_co8279983.1_g000001 Rmu_co8282085.1_g000001 Rmu_co8310275.1_g000001 Rmu_co8364577.1_g000001 Rmu_co8381009.1_g000001 Rmu_co8432097.1_g000001 Rmu_sc0000063.1_g000009 Rmu_sc0000063.1_g000013 Rmu_sc0000063.1_g000016 Rmu_sc0000063.1_g000035 Rmu_sc0000063.1_g000036 Rmu_sc0000063.1_g000041 Rmu_sc0000063.1_g000045 Rmu_sc0000101.1_g000007 Rmu_sc0000101.1_g000010 Rmu_sc0000101.1_g000012 Rmu_sc0000101.1_g000016 Rmu_sc0000101.1_g000018 Rmu_sc0000101.1_g000021 Rmu_sc0000328.1_g000017 Rmu_sc0000721.1_g000009 Rmu_sc0000721.1_g000018 Rmu_sc0000977.1_g000012 Rmu_sc0000987.1_g000005 Rmu_sc0000987.1_g000006 Rmu_sc0000987.1_g000007 Rmu_sc0000987.1_g000019 Rmu_sc0001102.1_g000004 Rmu_sc0001175.1_g000005 Rmu_sc0001175.1_g000006 Rmu_sc0001371.1_g000018 Rmu_sc0002298.1_g000006 Rmu_sc0002298.1_g000016 Rmu_sc0002344.1_g000016 Rmu_sc0002516.1_g000002 Rmu_sc0002516.1_g000006 Rmu_sc0002520.1_g000004 Rmu_sc0002942.1_g000023 Rmu_sc0002942.1_g000045 Rmu_sc0002944.1_g000005 Rmu_sc0002944.1_g000006 Rmu_sc0002944.1_g000008 Rmu_sc0002973.1_g000004 Rmu_sc0003006.1_g000017 Rmu_sc0003207.1_g000002 Rmu_sc0003207.1_g000006 Rmu_sc0003207.1_g000021 Rmu_sc0003207.1_g000027 Rmu_sc0003207.1_g000028 Rmu_sc0003207.1_g000029 Rmu_sc0003207.1_g000033 Rmu_sc0003207.1_g000034 Rmu_sc0003314.1_g000037 Rmu_sc0003314.1_g000038 Rmu_sc0003314.1_g000044 Rmu_sc0003500.1_g000046 Rmu_sc0003622.1_g000006 Rmu_sc0003895.1_g000027 Rmu_sc0004175.1_g000002 Rmu_sc0004549.1_g000010 Rmu_sc0004549.1_g000011 Rmu_sc0004605.1_g000003 Rmu_sc0004605.1_g000005 Rmu_sc0004605.1_g000018 Rmu_sc0005102.1_g000002 Rmu_sc0005297.1_g000008 Rmu_sc0005297.1_g000020 Rmu_sc0005494.1_g000004 Rmu_sc0005494.1_g000005 Rmu_sc0005571.1_g000023 Rmu_sc0005837.1_g000008 Rmu_sc0005837.1_g000009 Rmu_sc0005913.1_g000016 Rmu_sc0005913.1_g000023 Rmu_sc0005970.1_g000007 Rmu_sc0005970.1_g000008 Rmu_sc0005979.1_g000009 Rmu_sc0005979.1_g000010 Rmu_sc0005979.1_g000013 Rmu_sc0005979.1_g000022 Rmu_sc0005979.1_g000023 Rmu_sc0005979.1_g000029 Rmu_sc0006380.1_g000005 Rmu_sc0006413.1_g000017 Rmu_sc0006522.1_g000001 Rmu_sc0006522.1_g000012 Rmu_sc0006522.1_g000024 Rmu_sc0006522.1_g000026 Rmu_sc0006624.1_g000004 Rmu_sc0006695.1_g000084 Rmu_sc0006847.1_g000020 Rmu_sc0007340.1_g000001 Rmu_sc0007340.1_g000002 Rmu_sc0007340.1_g000005 Rmu_sc0007802.1_g000021 Rmu_sc0007937.1_g000001 Rmu_sc0007959.1_g000001 Rmu_sc0008101.1_g000016 Rmu_sc0008314.1_g000008 Rmu_sc0008554.1_g000003 Rmu_sc0009418.1_g000006 Rmu_sc0012344.1_g000011 Rmu_sc0012454.1_g000001 Rmu_sc0014162.1_g000019 Rmu_sc0014703.1_g000001 Rmu_sc0016863.1_g000001 Rmu_sc0019500.1_g000002 Rmu_sc0019500.1_g000003 Rmu_sc0022062.1_g000001 Rmu_sc0023638.1_g000002 Rmu_sc0023638.1_g000003 Rmu_sc0023645.1_g000001 Rmu_sc0030525.1_g000001 Rmu_sc0033158.1_g000001 Rmu_sc0033302.1_g000001 Rmu_sc0035631.1_g000001 Rmu_sc0040354.1_g000001 Rmu_sc0040355.1_g000001 Rmu_sc0041511.1_g000001 Rmu_sc0042599.1_g000002 Rmu_ssc0000204.1_g000059 Rmu_ssc0000261.1_g000001 Rmu_ssc0000261.1_g000002 Rmu_ssc0000261.1_g000006
rosa_roxburghii Rroxscaffold_1G00010300 Rroxscaffold_1G00054930 Rroxscaffold_1G00055750 Rroxscaffold_1G00056040 Rroxscaffold_1G00057030 Rroxscaffold_2G00096550 Rroxscaffold_2G00096670 Rroxscaffold_3G00221110 Rroxscaffold_3G00221130 Rroxscaffold_3G00221230 Rroxscaffold_3G00221240 Rroxscaffold_3G00221260 Rroxscaffold_3G00223130 Rroxscaffold_3G00245700 Rroxscaffold_3G00275530 Rroxscaffold_5G00354370 Rroxscaffold_5G00354380 Rroxscaffold_5G00354410 Rroxscaffold_7G00181690 Rroxscaffold_7G00181700 Rroxscaffold_7G00181740 Rroxscaffold_7G00181770 Rroxscaffold_7G00181860
rosa_rugosa Rorug01G0355500 Rorug02G0425400 Rorug03G0204400 Rorug03G0211300 Rorug03G0259200 Rorug04G0080200 Rorug04G0097500 Rorug04G0097500 Rorug04G0097900 Rorug04G0098000 Rorug04G0099200 Rorug04G0099300 Rorug05G0067900 Rorug05G0067900 Rorug05G0068200 Rorug05G0068400 Rorug05G0068600 Rorug05G0068700 Rorug05G0080500 Rorug05G0082700 Rorug05G0082800 Rorug05G0098600 Rorug05G0098600 Rorug05G0098700 Rorug05G0137400 Rorug05G0137500 Rorug05G0137600 Rorug06G0185200 Rorug06G0185200 Rorug06G0185400 Rorug06G0185400 Rorug06G0185600 Rorug06G0185700 Rorug06G0185700 Rorug07G0144000 Rorug07G0144100 Rorug07G0144300 Rorug07G0144400 Rorug07G0144600 Rorug07G0144600 Rorug07G0279700 Rorug07G0311200 Rorug07G0325900 Rorug07G0326000 Rorug07G0326000 Rorug07G0326000 Rorug07G0326100 Rorug07G0326500.1 Rorug07G0326700 Rorug07G0326800 Rorug07G0326900 Rorug07G0326900 Rorug07G0327100 Rorug07G0327100 Rorug07G0327100 Rorug07G0328700 Rorug07G0328800 Rorug07G0329100 Rorug07G0329200 Rorug07G0329300
rosa_samantha Rh1DG123500 Rh2AG486000 Rh2AG486200 Rh2AG486400 Rh2AG486500 Rh2BG498700 Rh3AG298100 Rh3AG298200 Rh4DG153100 Rh4DG399800 Rh5DG168400 Rh5DG172600 Rh6AG297000 Rh6AG297100 Rh6BG301500 Rh6BG301600 Rh6BG301700 Rh6BG302200 Rh6CG042300 Rh7CG497700 Rh7CG497800 Rh7DG424000 Rh7DG465300 Rh7DG465400 Rh7DG465500 Rh7DG465600 Rh7DG465900 Rh7DG466100 Rh7DG466200 Rh7DG466300 Rh7DG468400 Rh7DG468900 Rh7DG469100 Rh7DG469300
rosa_wichuraiana Rw0G000510 Rw0G004040 Rw0G014250 Rw0G015580 Rw2G039810 Rw2G040200 Rw2G040260 Rw3G022850 Rw3G026300 Rw4G004980 Rw4G009400 Rw4G013080 Rw4G033940 Rw5G015020 Rw5G015150 Rw5G015230 Rw5G015470 Rw5G017590 Rw5G020220 Rw5G020970 Rw5G043210 Rw6G012640 Rw6G012790 Rw6G025560 Rw6G025620 Rw6G025660 Rw6G025670 Rw7G023900 Rw7G035820 Rw7G038650 Rw7G038660 Rw7G038770 Rw7G040030 Rw7G040040 Rw7G040050 Rw7G040060 Rw7G040070 Rw7G040080 Rw7G040150 Rw7G040160 Rw7G040170 Rw7G040190 Rw7G040200 Rw7G040210 Rw7G040410 Rw7G040460 Rw7G040510 Rw7G040530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AarI CACCTGC 1 cut(s) 174
Acc16I TGCGCA 1 cut(s) 1699
Acc36I ACCTGC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 1238
AccBSI CCGCTC 2 cut(s) 200, 2595
AccI GTMKAC 3 cut(s) 1891, 2137, 2613
AciI CCGC 3 cut(s) 198, 2365, 2595
AcuI CTGAAG 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 183
AfaI GTAC 5 cut(s) 60, 298, 1384, 1997, 2798
AfeI AGCGCT 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 2359, 2371
AflII CTTAAG 1 cut(s) 2185
AjnI CCWGG 1 cut(s) 3085
AjuI GAANNNNNNNTTGG 2 cut(s) 2960, 2992
AloI GAACNNNNNNTCC 4 cut(s) 677, 709, 1253, 1285
Alw21I GWGCWC 2 cut(s) 1973, 2949
Alw26I GTCTC 3 cut(s) 1296, 1364, 2687
Alw44I GTGCAC 1 cut(s) 2945
Ama87I CYCGRG 1 cut(s) 1754
Aor51HI AGCGCT 1 cut(s) 126
AoxI GGCC 3 cut(s) 1815, 2350, 2994
ApaLI GTGCAC 1 cut(s) 2945
AseI ATTAAT 2 cut(s) 1448, 1952
Asp700I GAANNNNTTC 3 cut(s) 126, 1589, 1829
AspA2I CCTAGG 1 cut(s) 1183
AspLEI GCGC 2 cut(s) 127, 1700
AspS9I GGNCC 8 cut(s) 703, 847, 1135, 1279, 1815, 2246, 2351, 2362
AsuC2I CCSGG 1 cut(s) 2951
AsuHPI GGTGA 2 cut(s) 169, 1682
AvaI CYCGRG 1 cut(s) 1754
AvaII GGWCC 6 cut(s) 703, 847, 1135, 1279, 2246, 2362
AvrII CCTAGG 1 cut(s) 1183
AxyI CCTNAGG 2 cut(s) 751, 1039
BaeGI GKGCMC 2 cut(s) 2722, 2949
BanI GGYRCC 1 cut(s) 1238
BanII GRGCYC 1 cut(s) 996
BarI GAAGNNNNNNTAC 2 cut(s) 2091, 2123
BauI CACGAG 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 1617
Bbv12I GWGCWC 2 cut(s) 1973, 2949
BccI CCATC 5 cut(s) 789, 2007, 2519, 2669, 2784
BceAI ACGGC 2 cut(s) 2712, 3041
BcgI CGANNNNNNTGC 2 cut(s) 2610, 2644
BciT130I CCWGG 1 cut(s) 3087
BciVI GTATCC 1 cut(s) 282
BcnI CCSGG 1 cut(s) 2951
BcoDI GTCTC 3 cut(s) 1296, 1364, 2687
BfmI CTRYAG 2 cut(s) 2138, 2614
BfoI RGCGCY 1 cut(s) 128
BfrI CTTAAG 1 cut(s) 2185
BfuAI ACCTGC 1 cut(s) 174
BfuI GTATCC 1 cut(s) 282
BlnI CCTAGG 1 cut(s) 1183
BmcAI AGTACT 1 cut(s) 1384
Bme1390I CCNGG 2 cut(s) 2951, 3087
Bme18I GGWCC 6 cut(s) 703, 847, 1135, 1279, 2246, 2362
BmeT110I CYCGRG 1 cut(s) 1754
BmgT120I GGNCC 8 cut(s) 703, 847, 1135, 1279, 1815, 2246, 2351, 2362
BmiI GGNNCC 4 cut(s) 1240, 1586, 1816, 2248
BmrFI CCNGG 2 cut(s) 2951, 3087
BmsI GCATC 1 cut(s) 1851
BpiI GAAGAC 1 cut(s) 1617
BpuMI CCSGG 1 cut(s) 2951
Bsa29I ATCGAT 1 cut(s) 349
BsaJI CCNNGG 4 cut(s) 462, 895, 1183, 2907
BsaWI WCCGGW 1 cut(s) 2739
Bsc4I CCNNNNNNNGG 2 cut(s) 2359, 2371
Bse1I ACTGG 4 cut(s) 235, 736, 1168, 1312
Bse21I CCTNAGG 2 cut(s) 751, 1039
Bse3DI GCAATG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 3087
BseCI ATCGAT 1 cut(s) 349
BseDI CCNNGG 4 cut(s) 462, 895, 1183, 2907
BseGI GGATG 6 cut(s) 457, 1034, 1178, 1322, 2227, 2680
BseLI CCNNNNNNNGG 2 cut(s) 2359, 2371
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 6 cut(s) 400, 708, 1009, 1140, 1307, 2000
BseNI ACTGG 4 cut(s) 235, 736, 1168, 1312
BseSI GKGCMC 2 cut(s) 2722, 2949
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 3 cut(s) 1817, 2352, 2996
BshNI GGYRCC 1 cut(s) 1238
BshVI ATCGAT 1 cut(s) 349
BsiEI CGRYCG 1 cut(s) 468
BsiHKAI GWGCWC 2 cut(s) 1973, 2949
BsiHKCI CYCGRG 1 cut(s) 1754
BsiSI CCGG 2 cut(s) 2740, 2950
BslFI GGGAC 3 cut(s) 1704, 2232, 2966
BslI CCNNNNNNNGG 2 cut(s) 2359, 2371
BsmAI GTCTC 3 cut(s) 1296, 1364, 2687
BsmBI CGTCTC 2 cut(s) 1364, 2687
BsmFI GGGAC 3 cut(s) 1704, 2232, 2966
BsmI GAATGC 1 cut(s) 2699
BsnI GGCC 3 cut(s) 1817, 2352, 2996
BsoBI CYCGRG 1 cut(s) 1754
Bsp1286I GDGCHC 4 cut(s) 996, 1973, 2722, 2949
Bsp143I GATC 6 cut(s) 346, 350, 389, 420, 469, 1918
BspACI CCGC 3 cut(s) 198, 2365, 2595
BspANI GGCC 3 cut(s) 1817, 2352, 2996
BspCNI CTCAG 6 cut(s) 399, 709, 1008, 1141, 1306, 2001
BspDI ATCGAT 1 cut(s) 349
BspLI GGNNCC 4 cut(s) 1240, 1586, 1816, 2248
BspMI ACCTGC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 1238
BspTI CTTAAG 1 cut(s) 2185
BsrBI CCGCTC 2 cut(s) 200, 2595
BsrDI GCAATG 1 cut(s) 250
BsrI ACTGG 4 cut(s) 235, 736, 1168, 1312
BssECI CCNNGG 4 cut(s) 462, 895, 1183, 2907
BssMI GATC 6 cut(s) 346, 350, 389, 420, 469, 1918
BssNAI GTATAC 1 cut(s) 1892
BssSI CACGAG 1 cut(s) 181
BssT1I CCWWGG 2 cut(s) 1183, 2907
Bst1107I GTATAC 1 cut(s) 1892
Bst2BI CACGAG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 3087
Bst4CI ACNGT 5 cut(s) 590, 1022, 2313, 2347, 2894
Bst6I CTCTTC 4 cut(s) 791, 935, 1223, 1367
BstAFI CTTAAG 1 cut(s) 2185
BstC8I GCNNGC 4 cut(s) 1969, 2201, 2489, 2933
BstF5I GGATG 6 cut(s) 457, 1034, 1178, 1322, 2227, 2680
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 2 cut(s) 127, 1700
BstKTI GATC 6 cut(s) 349, 353, 392, 423, 472, 1921
BstMAI GTCTC 3 cut(s) 1296, 1364, 2687
BstMBI GATC 6 cut(s) 346, 350, 389, 420, 469, 1918
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 4 cut(s) 1977, 2205, 2349, 2592
BstNI CCWGG 1 cut(s) 3087
BstNSI RCATGY 4 cut(s) 1554, 2203, 2920, 2935
BstSCI CCNGG 2 cut(s) 2949, 3085
BstSFI CTRYAG 2 cut(s) 2138, 2614
BstSLI GKGCMC 2 cut(s) 2722, 2949
BstV2I GAAGAC 1 cut(s) 1617
BstXI CCANNNNNNTGG 1 cut(s) 225
BstZ17I GTATAC 1 cut(s) 1892
Bsu15I ATCGAT 1 cut(s) 349
Bsu36I CCTNAGG 2 cut(s) 751, 1039
BsuI GTATCC 1 cut(s) 282
BsuRI GGCC 3 cut(s) 1817, 2352, 2996
BsuTUI ATCGAT 1 cut(s) 349
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 6 cut(s) 457, 1034, 1178, 1322, 2227, 2680
BtsI GCAGTG 1 cut(s) 3015
BtsIMutI CAGTG 3 cut(s) 1305, 1509, 3015
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 4 cut(s) 1969, 2201, 2489, 2933
CfoI GCGC 2 cut(s) 127, 1700
Cfr13I GGNCC 8 cut(s) 703, 847, 1135, 1279, 1815, 2246, 2351, 2362
ClaI ATCGAT 1 cut(s) 349
CseI GACGC 1 cut(s) 2599
CsiI ACCWGGT 1 cut(s) 3085
Csp6I GTAC 5 cut(s) 59, 297, 1383, 1996, 2797
CviAII CATG 9 cut(s) 219, 240, 305, 1551, 2200, 2492, 2903, 2917, 2932
CviQI GTAC 5 cut(s) 59, 297, 1383, 1996, 2797
DpnI GATC 6 cut(s) 348, 352, 391, 422, 471, 1920
DpnII GATC 6 cut(s) 346, 350, 389, 420, 469, 1918
DraIII CACNNNGTG 1 cut(s) 183
Eam1104I CTCTTC 4 cut(s) 791, 935, 1223, 1367
EarI CTCTTC 4 cut(s) 791, 935, 1223, 1367
Eco130I CCWWGG 2 cut(s) 1183, 2907
Eco147I AGGCCT 1 cut(s) 2996
Eco24I GRGCYC 1 cut(s) 996
Eco47I GGWCC 6 cut(s) 703, 847, 1135, 1279, 2246, 2362
Eco47III AGCGCT 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 135
Eco81I CCTNAGG 2 cut(s) 751, 1039
Eco88I CYCGRG 1 cut(s) 1754
EcoO109I RGGNCCY 1 cut(s) 2246
EcoRI GAATTC 1 cut(s) 2034
EcoRII CCWGG 1 cut(s) 3085
EcoT14I CCWWGG 2 cut(s) 1183, 2907
EcoT22I ATGCAT 1 cut(s) 2205
EcoT38I GRGCYC 1 cut(s) 996
ErhI CCWWGG 2 cut(s) 1183, 2907
Esp3I CGTCTC 2 cut(s) 1364, 2687
FaeI CATG 9 cut(s) 222, 243, 308, 1554, 2203, 2495, 2906, 2920, 2935
FaqI GGGAC 3 cut(s) 1704, 2232, 2966
FatI CATG 9 cut(s) 218, 239, 304, 1550, 2199, 2491, 2902, 2916, 2931
FauI CCCGC 1 cut(s) 205
FauNDI CATATG 3 cut(s) 2215, 2989, 3070
FblI GTMKAC 3 cut(s) 1891, 2137, 2613
FokI GGATG 6 cut(s) 444, 1021, 1165, 1309, 2234, 2687
FriOI GRGCYC 1 cut(s) 996
FspAI RTGCGCAY 1 cut(s) 1699
FspI TGCGCA 1 cut(s) 1699
GlaI GCGC 2 cut(s) 126, 1699
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 3 cut(s) 1817, 2352, 2996
HapII CCGG 2 cut(s) 2740, 2950
HgaI GACGC 1 cut(s) 2599
HhaI GCGC 2 cut(s) 127, 1700
Hin1II CATG 9 cut(s) 222, 243, 308, 1554, 2203, 2495, 2906, 2920, 2935
Hin6I GCGC 2 cut(s) 125, 1698
HinP1I GCGC 2 cut(s) 125, 1698
HincII GTYRAC 3 cut(s) 758, 1046, 2890
HindII GTYRAC 3 cut(s) 758, 1046, 2890
HindIII AAGCTT 4 cut(s) 1540, 2277, 2289, 2753
HpaI GTTAAC 1 cut(s) 2890
HpaII CCGG 2 cut(s) 2740, 2950
HphI GGTGA 2 cut(s) 169, 1682
Hpy99I CGWCG 1 cut(s) 2324
HpyAV CCTTC 6 cut(s) 1819, 1905, 2093, 2189, 2237, 2321
HpyCH4III ACNGT 5 cut(s) 590, 1022, 2313, 2347, 2894
HpyCH4IV ACGT 1 cut(s) 2322
HpyF10VI GCNNNNNNNGC 4 cut(s) 1977, 2205, 2349, 2592
HpySE526I ACGT 1 cut(s) 2322
Hsp92II CATG 9 cut(s) 222, 243, 308, 1554, 2203, 2495, 2906, 2920, 2935
HspAI GCGC 2 cut(s) 125, 1698
KspAI GTTAAC 1 cut(s) 2890
Kzo9I GATC 6 cut(s) 346, 350, 389, 420, 469, 1918
LmnI GCTCC 1 cut(s) 2592
LweI GCATC 1 cut(s) 1851
MabI ACCWGGT 1 cut(s) 3085
MaeII ACGT 1 cut(s) 2322
MaeIII GTNAC 5 cut(s) 80, 1439, 1652, 2084, 2633
MalI GATC 6 cut(s) 348, 352, 391, 422, 471, 1920
MbiI CCGCTC 2 cut(s) 200, 2595
MboI GATC 6 cut(s) 346, 350, 389, 420, 469, 1918
MfeI CAATTG 5 cut(s) 1430, 1962, 2666, 2926, 2940
MhlI GDGCHC 4 cut(s) 996, 1973, 2722, 2949
MlyI GAGTC 4 cut(s) 1660, 1779, 2143, 3032
MmeI TCCRAC 4 cut(s) 232, 478, 2028, 2958
Mph1103I ATGCAT 1 cut(s) 2205
MroXI GAANNNNTTC 3 cut(s) 126, 1589, 1829
MslI CAYNNNNRTG 3 cut(s) 1327, 1646, 1684
MspCI CTTAAG 1 cut(s) 2185
MspI CCGG 2 cut(s) 2740, 2950
MspR9I CCNGG 2 cut(s) 2951, 3087
MunI CAATTG 5 cut(s) 1430, 1962, 2666, 2926, 2940
Mva1269I GAATGC 1 cut(s) 2699
MvaI CCWGG 1 cut(s) 3087
MwoI GCNNNNNNNGC 4 cut(s) 1977, 2205, 2349, 2592
NciI CCSGG 1 cut(s) 2951
NdeI CATATG 3 cut(s) 2215, 2989, 3070
NdeII GATC 6 cut(s) 346, 350, 389, 420, 469, 1918
NlaIII CATG 9 cut(s) 222, 243, 308, 1554, 2203, 2495, 2906, 2920, 2935
NlaIV GGNNCC 4 cut(s) 1240, 1586, 1816, 2248
NmuCI GTSAC 3 cut(s) 1652, 2084, 2633
NsbI TGCGCA 1 cut(s) 1699
NsiI ATGCAT 1 cut(s) 2205
NspI RCATGY 4 cut(s) 1554, 2203, 2920, 2935
PaeI GCATGC 2 cut(s) 2203, 2935
PaqCI CACCTGC 1 cut(s) 174
PceI AGGCCT 1 cut(s) 2996
PctI GAATGC 1 cut(s) 2699
PdmI GAANNNNTTC 3 cut(s) 126, 1589, 1829
PfeI GAWTC 9 cut(s) 721, 865, 1009, 1153, 1297, 2005, 2382, 2981, 3031
PleI GAGTC 4 cut(s) 1659, 1779, 2142, 3032
PpsI GAGTC 4 cut(s) 1659, 1779, 2142, 3032
PpuMI RGGWCCY 1 cut(s) 2246
PshBI ATTAAT 2 cut(s) 1448, 1952
PsiI TTATAA 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 2246
Psp6I CCWGG 1 cut(s) 3085
PspGI CCWGG 1 cut(s) 3085
PspN4I GGNNCC 4 cut(s) 1240, 1586, 1816, 2248
PspPI GGNCC 8 cut(s) 703, 847, 1135, 1279, 1815, 2246, 2351, 2362
PspPPI RGGWCCY 1 cut(s) 2246
RsaI GTAC 5 cut(s) 60, 298, 1384, 1997, 2798
RsaNI GTAC 5 cut(s) 59, 297, 1383, 1996, 2797
RseI CAYNNNNRTG 3 cut(s) 1327, 1646, 1684
Sau3AI GATC 6 cut(s) 346, 350, 389, 420, 469, 1918
Sau96I GGNCC 8 cut(s) 703, 847, 1135, 1279, 1815, 2246, 2351, 2362
ScaI AGTACT 1 cut(s) 1384
SchI GAGTC 4 cut(s) 1660, 1779, 2143, 3032
ScrFI CCNGG 2 cut(s) 2951, 3087
SduI GDGCHC 4 cut(s) 996, 1973, 2722, 2949
SexAI ACCWGGT 1 cut(s) 3085
SfaNI GCATC 1 cut(s) 1851
SfcI CTRYAG 2 cut(s) 2138, 2614
SinI GGWCC 6 cut(s) 703, 847, 1135, 1279, 2246, 2362
SmiMI CAYNNNNRTG 3 cut(s) 1327, 1646, 1684
SmlI CTYRAG 1 cut(s) 2185
SmoI CTYRAG 1 cut(s) 2185
SphI GCATGC 2 cut(s) 2203, 2935
SseBI AGGCCT 1 cut(s) 2996
SsiI CCGC 3 cut(s) 198, 2365, 2595
SspI AATATT 4 cut(s) 1471, 2746, 2884, 2971
StuI AGGCCT 1 cut(s) 2996
StyD4I CCNGG 2 cut(s) 2949, 3085
StyI CCWWGG 2 cut(s) 1183, 2907
TaaI ACNGT 5 cut(s) 590, 1022, 2313, 2347, 2894
TaiI ACGT 1 cut(s) 2325
TaqI TCGA 6 cut(s) 349, 468, 1788, 1932, 2272, 2630
TaqII GACCGA 1 cut(s) 454
TatI WGTACW 1 cut(s) 1382
TfiI GAWTC 9 cut(s) 721, 865, 1009, 1153, 1297, 2005, 2382, 2981, 3031
TscAI CASTG 3 cut(s) 1312, 1509, 3022
TseFI GTSAC 3 cut(s) 1652, 2084, 2633
Tsp45I GTSAC 3 cut(s) 1652, 2084, 2633
TspGWI ACGGA 1 cut(s) 1346
TspRI CASTG 3 cut(s) 1312, 1509, 3022
Vha464I CTTAAG 1 cut(s) 2185
VneI GTGCAC 1 cut(s) 2945
VpaK11BI GGWCC 6 cut(s) 703, 847, 1135, 1279, 2246, 2362
VspI ATTAAT 2 cut(s) 1448, 1952
XbaI TCTAGA 1 cut(s) 2467
XceI RCATGY 4 cut(s) 1554, 2203, 2920, 2935
XmaJI CCTAGG 1 cut(s) 1183
XmiI GTMKAC 3 cut(s) 1891, 2137, 2613
XmnI GAANNNNTTC 3 cut(s) 126, 1589, 1829
ZrmI AGTACT 1 cut(s) 1384
Zsp2I ATGCAT 1 cut(s) 2205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.