WD repeat-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1346 |
| AccB1I | GGYRCC | 2 cut(s) | 377, 3921 |
| AccBSI | CCGCTC | 1 cut(s) | 2909 |
| AccI | GTMKAC | 3 cut(s) | 565, 2007, 3642 |
| AccII | CGCG | 1 cut(s) | 3580 |
| AccIII | TCCGGA | 2 cut(s) | 1094, 4118 |
| AclI | AACGTT | 1 cut(s) | 608 |
| AclWI | GGATC | 5 cut(s) | 1002, 1279, 2351, 2669, 3659 |
| AcoI | YGGCCR | 2 cut(s) | 2430, 4071 |
| AcsI | RAATTY | 7 cut(s) | 1136, 1489, 1563, 1736, 1792, 2283, 4046 |
| AcyI | GRCGYC | 2 cut(s) | 2846, 2852 |
| AfaI | GTAC | 7 cut(s) | 169, 297, 304, 2567, 3064, 3569, 3732 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 755, 1187, 1475, 2149, 2189, 3637 |
| AflIII | ACRYGT | 1 cut(s) | 2010 |
| AgeI | ACCGGT | 1 cut(s) | 236 |
| AjnI | CCWGG | 2 cut(s) | 2870, 3766 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1634, 1666, 3314, 3346 |
| AleI | CACNNNNGTG | 1 cut(s) | 3368 |
| Alw21I | GWGCWC | 2 cut(s) | 866, 3809 |
| Alw26I | GTCTC | 2 cut(s) | 1424, 4151 |
| AlwI | GGATC | 5 cut(s) | 1002, 1279, 2351, 2669, 3659 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1924 |
| Ama87I | CYCGRG | 1 cut(s) | 2070 |
| Aor13HI | TCCGGA | 2 cut(s) | 1094, 4118 |
| AoxI | GGCC | 8 cut(s) | 808, 1312, 2430, 3276, 3617, 3844, 3880, 4071 |
| ApeKI | GCWGC | 5 cut(s) | 254, 2063, 3153, 3257, 3260 |
| ApoI | RAATTY | 7 cut(s) | 1136, 1489, 1563, 1736, 1792, 2283, 4046 |
| AsiGI | ACCGGT | 1 cut(s) | 236 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2483, 3683 |
| AspLEI | GCGC | 2 cut(s) | 2735, 3580 |
| AspS9I | GGNCC | 9 cut(s) | 234, 809, 1170, 1313, 2033, 2152, 2770, 3844, 3880 |
| AsuC2I | CCSGG | 2 cut(s) | 165, 3926 |
| AvaI | CYCGRG | 1 cut(s) | 2070 |
| AvaII | GGWCC | 5 cut(s) | 234, 1170, 2033, 2152, 2770 |
| BaeGI | GKGCMC | 3 cut(s) | 1487, 2506, 3894 |
| BalI | TGGCCA | 1 cut(s) | 4073 |
| BanI | GGYRCC | 2 cut(s) | 377, 3921 |
| BanII | GRGCYC | 1 cut(s) | 866 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1878, 1910 |
| BauI | CACGAG | 1 cut(s) | 148 |
| BbsI | GAAGAC | 5 cut(s) | 464, 1989, 2389, 3123, 4270 |
| Bbv12I | GWGCWC | 2 cut(s) | 866, 3809 |
| BbvI | GCAGC | 5 cut(s) | 241, 2050, 3165, 3269, 3272 |
| BccI | CCATC | 9 cut(s) | 389, 936, 1181, 1311, 1906, 2303, 2889, 3923, 4052 |
| BceAI | ACGGC | 4 cut(s) | 1305, 2417, 2839, 3992 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3856, 3890 |
| BciT130I | CCWGG | 2 cut(s) | 2872, 3768 |
| BclI | TGATCA | 1 cut(s) | 4213 |
| BcnI | CCSGG | 2 cut(s) | 165, 3926 |
| BcoDI | GTCTC | 2 cut(s) | 1424, 4151 |
| BfmI | CTRYAG | 4 cut(s) | 255, 566, 1925, 3967 |
| BfoI | RGCGCY | 1 cut(s) | 2736 |
| BfuAI | ACCTGC | 1 cut(s) | 1346 |
| BglII | AGATCT | 2 cut(s) | 5, 3447 |
| BisI | GCNGC | 7 cut(s) | 255, 1250, 2064, 2676, 3154, 3258, 3261 |
| BlpI | GCTNAGC | 1 cut(s) | 4080 |
| BlsI | GCNGC | 7 cut(s) | 256, 1251, 2065, 2677, 3155, 3259, 3262 |
| Bme1390I | CCNGG | 4 cut(s) | 165, 2872, 3768, 3926 |
| Bme18I | GGWCC | 5 cut(s) | 234, 1170, 2033, 2152, 2770 |
| BmeT110I | CYCGRG | 1 cut(s) | 2070 |
| BmgT120I | GGNCC | 9 cut(s) | 234, 809, 1170, 1313, 2033, 2152, 2770, 3844, 3880 |
| BmiI | GGNNCC | 8 cut(s) | 379, 1099, 1171, 3845, 3881, 3923, 3953, 3989 |
| BmrFI | CCNGG | 4 cut(s) | 165, 2872, 3768, 3926 |
| BmrI | ACTGGG | 4 cut(s) | 2654, 2774, 3957, 4108 |
| BmsI | GCATC | 4 cut(s) | 1017, 2505, 3478, 3500 |
| BmuI | ACTGGG | 4 cut(s) | 2654, 2774, 3957, 4108 |
| BpiI | GAAGAC | 5 cut(s) | 464, 1989, 2389, 3123, 4270 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3152, 3184 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4080 |
| BpuEI | CTTGAG | 3 cut(s) | 1024, 3653, 3803 |
| BpuMI | CCSGG | 2 cut(s) | 165, 3926 |
| Bsa29I | ATCGAT | 1 cut(s) | 2664 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1071, 2355, 3459, 3752 |
| BsaHI | GRCGYC | 2 cut(s) | 2846, 2852 |
| BsaJI | CCNNGG | 8 cut(s) | 963, 2855, 2871, 3536, 3610, 3767, 3850, 4074 |
| BsaWI | WCCGGW | 6 cut(s) | 236, 1094, 1238, 2747, 3176, 4118 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2184, 2214, 2742, 2772, 3158, 3188 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 755, 1187, 1475, 2149, 2189, 3637 |
| Bse118I | RCCGGY | 1 cut(s) | 236 |
| Bse1I | ACTGG | 7 cut(s) | 75, 1531, 2649, 2780, 3087, 3952, 4114 |
| Bse3DI | GCAATG | 2 cut(s) | 2078, 2867 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1071, 2355, 3459, 3752 |
| BseAI | TCCGGA | 2 cut(s) | 1094, 4118 |
| BseBI | CCWGG | 2 cut(s) | 2872, 3768 |
| BseCI | ATCGAT | 1 cut(s) | 2664 |
| BseDI | CCNNGG | 8 cut(s) | 963, 2855, 2871, 3536, 3610, 3767, 3850, 4074 |
| BseGI | GGATG | 8 cut(s) | 159, 381, 1173, 1496, 2414, 2900, 2905, 3934 |
| BseJI | GATNNNNATC | 4 cut(s) | 1071, 2355, 3459, 3752 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 755, 1187, 1475, 2149, 2189, 3637 |
| BseMI | GCAATG | 2 cut(s) | 2078, 2867 |
| BseMII | CTCAG | 6 cut(s) | 1533, 2502, 3150, 3240, 3451, 4071 |
| BseNI | ACTGG | 7 cut(s) | 75, 1531, 2649, 2780, 3087, 3952, 4114 |
| BseSI | GKGCMC | 3 cut(s) | 1487, 2506, 3894 |
| BseXI | GCAGC | 5 cut(s) | 241, 2050, 3165, 3269, 3272 |
| BseYI | CCCAGC | 1 cut(s) | 135 |
| BsgI | GTGCAG | 2 cut(s) | 1324, 3818 |
| Bsh1236I | CGCG | 1 cut(s) | 3580 |
| Bsh1285I | CGRYCG | 2 cut(s) | 2748, 3616 |
| BshFI | GGCC | 8 cut(s) | 810, 1314, 2432, 3278, 3619, 3846, 3882, 4073 |
| BshNI | GGYRCC | 2 cut(s) | 377, 3921 |
| BshTI | ACCGGT | 1 cut(s) | 236 |
| BshVI | ATCGAT | 1 cut(s) | 2664 |
| BsiEI | CGRYCG | 2 cut(s) | 2748, 3616 |
| BsiHKAI | GWGCWC | 2 cut(s) | 866, 3809 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2070 |
| BslFI | GGGAC | 5 cut(s) | 1615, 1840, 3985, 3992, 4146 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 755, 1187, 1475, 2149, 2189, 3637 |
| BsmAI | GTCTC | 2 cut(s) | 1424, 4151 |
| BsmFI | GGGAC | 5 cut(s) | 1615, 1840, 3985, 3992, 4146 |
| BsmI | GAATGC | 2 cut(s) | 2483, 2485 |
| BsnI | GGCC | 8 cut(s) | 810, 1314, 2432, 3278, 3619, 3846, 3882, 4073 |
| BsoBI | CYCGRG | 1 cut(s) | 2070 |
| Bsp1286I | GDGCHC | 5 cut(s) | 866, 1487, 2506, 3809, 3894 |
| Bsp13I | TCCGGA | 2 cut(s) | 1094, 4118 |
| Bsp1407I | TGTACA | 1 cut(s) | 3730 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4080 |
| Bsp19I | CCATGG | 2 cut(s) | 963, 4074 |
| BspANI | GGCC | 8 cut(s) | 810, 1314, 2432, 3278, 3619, 3846, 3882, 4073 |
| BspCNI | CTCAG | 6 cut(s) | 1534, 2503, 3151, 3241, 3450, 4072 |
| BspDI | ATCGAT | 1 cut(s) | 2664 |
| BspEI | TCCGGA | 2 cut(s) | 1094, 4118 |
| BspFNI | CGCG | 1 cut(s) | 3580 |
| BspHI | TCATGA | 2 cut(s) | 2334, 3750 |
| BspLI | GGNNCC | 8 cut(s) | 379, 1099, 1171, 3845, 3881, 3923, 3953, 3989 |
| BspMAI | CTGCAG | 2 cut(s) | 259, 1929 |
| BspMI | ACCTGC | 1 cut(s) | 1346 |
| BspPI | GGATC | 5 cut(s) | 1002, 1279, 2351, 2669, 3659 |
| BspT107I | GGYRCC | 2 cut(s) | 377, 3921 |
| BsrBI | CCGCTC | 1 cut(s) | 2909 |
| BsrDI | GCAATG | 2 cut(s) | 2078, 2867 |
| BsrFI | RCCGGY | 1 cut(s) | 236 |
| BsrGI | TGTACA | 1 cut(s) | 3730 |
| BsrI | ACTGG | 7 cut(s) | 75, 1531, 2649, 2780, 3087, 3952, 4114 |
| BssAI | RCCGGY | 1 cut(s) | 236 |
| BssECI | CCNNGG | 8 cut(s) | 963, 2855, 2871, 3536, 3610, 3767, 3850, 4074 |
| BssNAI | GTATAC | 1 cut(s) | 3643 |
| BssNI | GRCGYC | 2 cut(s) | 2846, 2852 |
| BssSI | CACGAG | 1 cut(s) | 148 |
| BssT1I | CCWWGG | 4 cut(s) | 963, 3536, 3850, 4074 |
| Bst1107I | GTATAC | 1 cut(s) | 3643 |
| Bst2BI | CACGAG | 1 cut(s) | 148 |
| Bst2UI | CCWGG | 2 cut(s) | 2872, 3768 |
| Bst4CI | ACNGT | 6 cut(s) | 490, 570, 2428, 3067, 3301, 3572 |
| Bst6I | CTCTTC | 1 cut(s) | 3674 |
| BstACI | GRCGYC | 2 cut(s) | 2846, 2852 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1924 |
| BstAUI | TGTACA | 1 cut(s) | 3730 |
| BstC8I | GCNNGC | 4 cut(s) | 118, 2673, 3662, 4086 |
| BstDSI | CCRYGG | 3 cut(s) | 963, 2855, 4074 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3635 |
| BstF5I | GGATG | 8 cut(s) | 159, 381, 1173, 1496, 2414, 2900, 2905, 3934 |
| BstFNI | CGCG | 1 cut(s) | 3580 |
| BstH2I | RGCGCY | 1 cut(s) | 2736 |
| BstHHI | GCGC | 2 cut(s) | 2735, 3580 |
| BstMAI | GTCTC | 2 cut(s) | 1424, 4151 |
| BstMCI | CGRYCG | 2 cut(s) | 2748, 3616 |
| BstNI | CCWGG | 2 cut(s) | 2872, 3768 |
| BstNSI | RCATGY | 2 cut(s) | 1990, 2014 |
| BstSCI | CCNGG | 4 cut(s) | 163, 2870, 3766, 3924 |
| BstSFI | CTRYAG | 4 cut(s) | 255, 566, 1925, 3967 |
| BstSLI | GKGCMC | 3 cut(s) | 1487, 2506, 3894 |
| BstUI | CGCG | 1 cut(s) | 3580 |
| BstV1I | GCAGC | 5 cut(s) | 241, 2050, 3165, 3269, 3272 |
| BstV2I | GAAGAC | 5 cut(s) | 464, 1989, 2389, 3123, 4270 |
| BstX2I | RGATCY | 3 cut(s) | 5, 994, 3447 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1166, 1310, 2644 |
| BstYI | RGATCY | 3 cut(s) | 5, 994, 3447 |
| BstZ17I | GTATAC | 1 cut(s) | 3643 |
| Bsu15I | ATCGAT | 1 cut(s) | 2664 |
| BsuRI | GGCC | 8 cut(s) | 810, 1314, 2432, 3278, 3619, 3846, 3882, 4073 |
| BsuTUI | ATCGAT | 1 cut(s) | 2664 |
| BtgI | CCRYGG | 3 cut(s) | 963, 2855, 4074 |
| BtgZI | GCGATG | 1 cut(s) | 2472 |
| BtsCI | GGATG | 8 cut(s) | 159, 381, 1173, 1496, 2414, 2900, 2905, 3934 |
| BtsI | GCAGTG | 2 cut(s) | 2761, 4234 |
| BtsIMutI | CAGTG | 4 cut(s) | 2433, 2761, 3094, 4234 |
| BveI | ACCTGC | 1 cut(s) | 1346 |
| Cac8I | GCNNGC | 4 cut(s) | 118, 2673, 3662, 4086 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1924 |
| CciI | TCATGA | 2 cut(s) | 2334, 3750 |
| CfoI | GCGC | 2 cut(s) | 2735, 3580 |
| Cfr10I | RCCGGY | 1 cut(s) | 236 |
| Cfr13I | GGNCC | 9 cut(s) | 234, 809, 1170, 1313, 2033, 2152, 2770, 3844, 3880 |
| ClaI | ATCGAT | 1 cut(s) | 2664 |
| CseI | GACGC | 5 cut(s) | 551, 1349, 2507, 2854, 2860 |
| Csp6I | GTAC | 7 cut(s) | 168, 296, 303, 2566, 3063, 3568, 3731 |
| CspAI | ACCGGT | 1 cut(s) | 236 |
| CviQI | GTAC | 7 cut(s) | 168, 296, 303, 2566, 3063, 3568, 3731 |
| DraI | TTTAAA | 1 cut(s) | 3480 |
| EaeI | YGGCCR | 2 cut(s) | 2430, 4071 |
| Eam1104I | CTCTTC | 1 cut(s) | 3674 |
| EarI | CTCTTC | 1 cut(s) | 3674 |
| EciI | GGCGGA | 5 cut(s) | 61, 591, 735, 2693, 2970 |
| Ecl136II | GAGCTC | 1 cut(s) | 864 |
| Eco130I | CCWWGG | 4 cut(s) | 963, 3536, 3850, 4074 |
| Eco24I | GRGCYC | 1 cut(s) | 866 |
| Eco47I | GGWCC | 5 cut(s) | 234, 1170, 2033, 2152, 2770 |
| Eco53kI | GAGCTC | 1 cut(s) | 864 |
| Eco88I | CYCGRG | 1 cut(s) | 2070 |
| EcoICRI | GAGCTC | 1 cut(s) | 864 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3635 |
| EcoO109I | RGGNCCY | 2 cut(s) | 3844, 3880 |
| EcoRII | CCWGG | 2 cut(s) | 2870, 3766 |
| EcoT14I | CCWWGG | 4 cut(s) | 963, 3536, 3850, 4074 |
| EcoT22I | ATGCAT | 2 cut(s) | 2485, 3493 |
| EcoT38I | GRGCYC | 1 cut(s) | 866 |
| ErhI | CCWWGG | 4 cut(s) | 963, 3536, 3850, 4074 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 208, 240, 2022, 2054, 3314, 3346 |
| FaqI | GGGAC | 5 cut(s) | 1615, 1840, 3985, 3992, 4146 |
| FauI | CCCGC | 2 cut(s) | 465, 1504 |
| FauNDI | CATATG | 1 cut(s) | 4222 |
| FbaI | TGATCA | 1 cut(s) | 4213 |
| FblI | GTMKAC | 3 cut(s) | 565, 2007, 3642 |
| Fnu4HI | GCNGC | 7 cut(s) | 255, 1250, 2064, 2676, 3154, 3258, 3261 |
| FokI | GGATG | 8 cut(s) | 166, 368, 1160, 1483, 2401, 2907, 2912, 3941 |
| FriOI | GRGCYC | 1 cut(s) | 866 |
| Fsp4HI | GCNGC | 7 cut(s) | 255, 1250, 2064, 2676, 3154, 3258, 3261 |
| GlaI | GCGC | 2 cut(s) | 2734, 3579 |
| GluI | GCNGC | 7 cut(s) | 255, 1250, 2064, 2676, 3154, 3258, 3261 |
| GsaI | CCCAGC | 1 cut(s) | 139 |
| HaeII | RGCGCY | 1 cut(s) | 2736 |
| HaeIII | GGCC | 8 cut(s) | 810, 1314, 2432, 3278, 3619, 3846, 3882, 4073 |
| HgaI | GACGC | 5 cut(s) | 551, 1349, 2507, 2854, 2860 |
| HhaI | GCGC | 2 cut(s) | 2735, 3580 |
| Hin1I | GRCGYC | 2 cut(s) | 2846, 2852 |
| Hin6I | GCGC | 2 cut(s) | 2733, 3578 |
| HinP1I | GCGC | 2 cut(s) | 2733, 3578 |
| HincII | GTYRAC | 1 cut(s) | 3424 |
| HindII | GTYRAC | 1 cut(s) | 3424 |
| HindIII | AAGCTT | 4 cut(s) | 1327, 1345, 2537, 4191 |
| HpaI | GTTAAC | 1 cut(s) | 3424 |
| Hpy99I | CGWCG | 5 cut(s) | 536, 2717, 2720, 2746, 2854 |
| HpyCH4III | ACNGT | 6 cut(s) | 490, 570, 2428, 3067, 3301, 3572 |
| HpyCH4IV | ACGT | 3 cut(s) | 305, 608, 3981 |
| HpySE526I | ACGT | 3 cut(s) | 305, 608, 3981 |
| Hsp92I | GRCGYC | 2 cut(s) | 2846, 2852 |
| HspAI | GCGC | 2 cut(s) | 2733, 3578 |
| Kpn2I | TCCGGA | 2 cut(s) | 1094, 4118 |
| Ksp22I | TGATCA | 1 cut(s) | 4213 |
| KspAI | GTTAAC | 1 cut(s) | 3424 |
| LmnI | GCTCC | 8 cut(s) | 869, 2192, 2740, 2906, 2957, 2974, 3386, 4028 |
| Lsp1109I | GCAGC | 5 cut(s) | 241, 2050, 3165, 3269, 3272 |
| LweI | GCATC | 4 cut(s) | 1017, 2505, 3478, 3500 |
| MaeII | ACGT | 3 cut(s) | 305, 608, 3981 |
| MaeIII | GTNAC | 7 cut(s) | 306, 1118, 1151, 1766, 1819, 2519, 3142 |
| MbiI | CCGCTC | 1 cut(s) | 2909 |
| MfeI | CAATTG | 5 cut(s) | 440, 713, 1376, 1832, 3726 |
| MflI | RGATCY | 3 cut(s) | 5, 994, 3447 |
| MhlI | GDGCHC | 5 cut(s) | 866, 1487, 2506, 3809, 3894 |
| MlsI | TGGCCA | 1 cut(s) | 4073 |
| MluNI | TGGCCA | 1 cut(s) | 4073 |
| MlyI | GAGTC | 8 cut(s) | 723, 1930, 3092, 3161, 3167, 3170, 4007, 4178 |
| MmeI | TCCRAC | 7 cut(s) | 914, 1130, 1205, 1632, 1671, 1994, 2793 |
| Mox20I | TGGCCA | 1 cut(s) | 4073 |
| Mph1103I | ATGCAT | 2 cut(s) | 2485, 3493 |
| MroI | TCCGGA | 2 cut(s) | 1094, 4118 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2483, 3683 |
| MscI | TGGCCA | 1 cut(s) | 4073 |
| MslI | CAYNNNNRTG | 3 cut(s) | 3368, 3927, 4221 |
| Msp20I | TGGCCA | 1 cut(s) | 4073 |
| MspA1I | CMGCKG | 1 cut(s) | 1541 |
| MspR9I | CCNGG | 4 cut(s) | 165, 2872, 3768, 3926 |
| MunI | CAATTG | 5 cut(s) | 440, 713, 1376, 1832, 3726 |
| Mva1269I | GAATGC | 2 cut(s) | 2483, 2485 |
| MvaI | CCWGG | 2 cut(s) | 2872, 3768 |
| MvnI | CGCG | 1 cut(s) | 3580 |
| NciI | CCSGG | 2 cut(s) | 165, 3926 |
| NcoI | CCATGG | 2 cut(s) | 963, 4074 |
| NdeI | CATATG | 1 cut(s) | 4222 |
| NlaIV | GGNNCC | 8 cut(s) | 379, 1099, 1171, 3845, 3881, 3923, 3953, 3989 |
| NmuCI | GTSAC | 4 cut(s) | 1118, 1151, 1766, 2519 |
| NsiI | ATGCAT | 2 cut(s) | 2485, 3493 |
| NspI | RCATGY | 2 cut(s) | 1990, 2014 |
| OliI | CACNNNNGTG | 1 cut(s) | 3368 |
| PagI | TCATGA | 2 cut(s) | 2334, 3750 |
| PciI | ACATGT | 1 cut(s) | 2010 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2715, 2852 |
| PctI | GAATGC | 2 cut(s) | 2483, 2485 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2483, 3683 |
| PinAI | ACCGGT | 1 cut(s) | 236 |
| PkrI | GCNGC | 7 cut(s) | 256, 1251, 2065, 2677, 3155, 3259, 3262 |
| PleI | GAGTC | 8 cut(s) | 723, 1929, 3091, 3161, 3167, 3169, 4006, 4178 |
| PpsI | GAGTC | 8 cut(s) | 723, 1929, 3091, 3161, 3167, 3169, 4006, 4178 |
| PscI | ACATGT | 1 cut(s) | 2010 |
| Psp124BI | GAGCTC | 1 cut(s) | 866 |
| Psp1406I | AACGTT | 1 cut(s) | 608 |
| Psp6I | CCWGG | 2 cut(s) | 2870, 3766 |
| PspFI | CCCAGC | 1 cut(s) | 135 |
| PspGI | CCWGG | 2 cut(s) | 2870, 3766 |
| PspN4I | GGNNCC | 8 cut(s) | 379, 1099, 1171, 3845, 3881, 3923, 3953, 3989 |
| PspPI | GGNCC | 9 cut(s) | 234, 809, 1170, 1313, 2033, 2152, 2770, 3844, 3880 |
| PstI | CTGCAG | 2 cut(s) | 259, 1929 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1924 |
| PsuI | RGATCY | 3 cut(s) | 5, 994, 3447 |
| PvuII | CAGCTG | 1 cut(s) | 1541 |
| RsaI | GTAC | 7 cut(s) | 169, 297, 304, 2567, 3064, 3569, 3732 |
| RsaNI | GTAC | 7 cut(s) | 168, 296, 303, 2566, 3063, 3568, 3731 |
| RseI | CAYNNNNRTG | 3 cut(s) | 3368, 3927, 4221 |
| SacI | GAGCTC | 1 cut(s) | 866 |
| SatI | GCNGC | 7 cut(s) | 255, 1250, 2064, 2676, 3154, 3258, 3261 |
| Sau96I | GGNCC | 9 cut(s) | 234, 809, 1170, 1313, 2033, 2152, 2770, 3844, 3880 |
| SchI | GAGTC | 8 cut(s) | 723, 1930, 3092, 3161, 3167, 3170, 4007, 4178 |
| ScrFI | CCNGG | 4 cut(s) | 165, 2872, 3768, 3926 |
| SduI | GDGCHC | 5 cut(s) | 866, 1487, 2506, 3809, 3894 |
| SfaNI | GCATC | 4 cut(s) | 1017, 2505, 3478, 3500 |
| SfcI | CTRYAG | 4 cut(s) | 255, 566, 1925, 3967 |
| SinI | GGWCC | 5 cut(s) | 234, 1170, 2033, 2152, 2770 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 3368, 3927, 4221 |
| SmlI | CTYRAG | 3 cut(s) | 1003, 3632, 3818 |
| SmoI | CTYRAG | 3 cut(s) | 1003, 3632, 3818 |
| SspI | AATATT | 3 cut(s) | 187, 897, 2530 |
| SstI | GAGCTC | 1 cut(s) | 866 |
| StyD4I | CCNGG | 4 cut(s) | 163, 2870, 3766, 3924 |
| StyI | CCWWGG | 4 cut(s) | 963, 3536, 3850, 4074 |
| TaaI | ACNGT | 6 cut(s) | 490, 570, 2428, 3067, 3301, 3572 |
| TaiI | ACGT | 3 cut(s) | 308, 611, 3984 |
| TaqII | GACCGA | 2 cut(s) | 1802, 3602 |
| TatI | WGTACW | 2 cut(s) | 2565, 3730 |
| TauI | GCSGC | 2 cut(s) | 1252, 2678 |
| TscAI | CASTG | 4 cut(s) | 2433, 2761, 3094, 4234 |
| TseFI | GTSAC | 4 cut(s) | 1118, 1151, 1766, 2519 |
| TseI | GCWGC | 5 cut(s) | 254, 2063, 3153, 3257, 3260 |
| Tsp45I | GTSAC | 4 cut(s) | 1118, 1151, 1766, 2519 |
| TspGWI | ACGGA | 3 cut(s) | 228, 1139, 2704 |
| TspRI | CASTG | 4 cut(s) | 2433, 2761, 3094, 4234 |
| VpaK11BI | GGWCC | 5 cut(s) | 234, 1170, 2033, 2152, 2770 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3635 |
| XapI | RAATTY | 7 cut(s) | 1136, 1489, 1563, 1736, 1792, 2283, 4046 |
| XbaI | TCTAGA | 4 cut(s) | 853, 997, 1708, 3791 |
| XceI | RCATGY | 2 cut(s) | 1990, 2014 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2425 |
| XmiI | GTMKAC | 3 cut(s) | 565, 2007, 3642 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2483, 3683 |
| Zsp2I | ATGCAT | 2 cut(s) | 2485, 3493 |