MD09G1153300.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
12156753 .. 12159252
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1153300.v1.1.491

Sequence Viewer

Length: 1884 bp
ATGAATAATTTTACATTTCTGAAGCAGTTGTGGTTGAGCAACAACAACTTTTCTGGCAGCATTCCACAAGGCATATGCATCGGCGGAGTACTTGAAACGTTTACAGCACACAGCAATCAGTTCACAGGCCTCATGCCTGGAAGCTTGAGGAACTGCACCAGCTTAGTTCGATTGAGGCTTGAGAGGAACCAGCTGACAGCAAACATAGCGCAAGAGTTTGGCATTTATCCAAAACTAACTTATGTTGATTTGAGTTACAACAGATTTTATGGGGAGCTTTCTGAGAACTGGGGCCAGTGCCAAAACTTACAAAGCTTGAGGCTCAGCAACAACAGAATTTCTGGGGCAGTTCCACGGTTTGAGAGATCAATGCAGCTGCATGTGCTTGTCCTCTCTTCAAATAATCTCACAGGGACAATCCCGATTGAACTAGGGGGGTTGACATTAATGTTCAACCTTAACCTTGGTGATAACAAACTGTCAAGCAGCGTTCCTGTGGAGATTGGAATGCTAACCAATCTACAACATCTTAACTTAGCTGCCAACGATTTCAGTGGACCAATTCCTAAACAATTAGACAGGTGCAGAGAATTGTTGAACTTGAATTTGAGCAGAAACAGATTTGGTGGCAGCATTCCTCCTGAAATAAGCAGCATAGACTCTCTTCAAGTTCTTGATCTGAGTCAAAATTCACTGATGAGTGAAATCCCACCGCAGCTTGGGAATTTGATGAAATTGGAAGCCTTGAATCTCTCCCACAACGAGCTCTCTGGTTCGATCCCATCCACATTCGATAACATGTTGAGCTTGACAGTTGTTGACATGTCATACAATCATTTGGAAGGTCCTCTTCCCAACAACAAAGCGTTCCACGAGGCTTCGACTCTAGCTTTTGCGAATAACACAGGCTTGTGTGGCAATGCAACCGGTTTGAATGTTTGTCCGTCTGAAACAAGAGGGGAGAAAAAGAGCAGCAAATCAGTTATCTTCATTGTACTACTTGTTTTAGGCATCCTTTTTTTTGCATTTGTTGTAACTGGGATTCTTTGCGTGGTCTACTATCCACGGGAAGCACAATTAAATGAAGACCAATTTGCAGTTTGGAGCTATGATGGAAGACTTCAGTATGAAGACATCATTGAAGCCACAGAGGAATTCAACTCCAAATATTGTGTGGGGGTGGGAGGCAATGCAAGTGTTTACAAAGCTGAGCTCCCAACAGGCCGAATTGTTGCGGTGAAGAAACTTCACATGTTGCAGGACAGGGGAGTGGCAAATCTCAAGGCTTTCGAGAGTGAGGTTCAAGGAGGAAGCTTGGAAAACATACTGACTGACGAAAACCATGCAGTTAAGTTTGGATGGATTGAGAGAGTGAATGTTGTCAAGGATGTTGCTAATGCATTGTCTTATATGCATCATGATTGTTCACCTCCTATAGTACATCGAGACATTTCGAGTAAGAACATCTTGCTGGATTTGGAATATAGAGCTTATGTCTCTGATTTTGGTACAGCTAAGCTCTTGAATCTTGAGACTTCAAATTGGACTTCGTTTGCAGGCACATTTGGATATAGTGCTCCAGAGTTAGCATACACGATGGAAGTGAACGAGAAATGCGATGTTTATAGCTTTGGAGTGGTAGCACTAGAAGTGATCATGGGAAAGCATCCCGGAGACCTCCTCTCCTATTTTTTGTCATTGTCTTTAACATCAACACCCGAACCTCTACAACTGAACGATGTCTTAGACAAGAGCCTCCCGCCTCCTGGAAATCATGTTGTCAACAAAGTGATCACCGTTGCAAACCTTGCATTTGCGTGCTTGCGAACGAATCCCCAATCTCGACCAACCATGCAACAAATTTCCCGCGAGTTGTTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

628

Amino Acids

69.3

Weight (kDa)

5.54

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 192 - 274 2.3e-06 Leucine-rich repeat region
LRR_8 PF13855 221 - 280 3.8e-07 Leucine rich repeat
Pkinase PF00069 434 - 623 1.1e-24 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 434 - 625 9.2e-23 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08850 AT4G08850
fragaria_vesca FvH4_2g07670 FvH4_2g07680 FvH4_2g20750 FvH4_2g20750 FvH4_2g20790 FvH4_3g14180 FvH4_3g14180 FvH4_3g14230 FvH4_3g14330 FvH4_3g14340 FvH4_3g14340 FvH4_3g14360 FvH4_3g14370 FvH4_3g14371 FvH4_3g16410 FvH4_4g04540 FvH4_4g33281 FvH4_5g24120 FvH4_5g36290 FvH4_5g37480 FvH4_5g37490 FvH4_5g37510 FvH4_5g37510 FvH4_5g37520 FvH4_5g37560 FvH4_5g37580 FvH4_5g37590 FvH4_5g37590 FvH4_5g37590 FvH4_5g37790 FvH4_5g37800 FvH4_6g38120
malus_domestica MD00G1009600.v1.1 MD00G1061200.v1.1 MD00G1123900.v1.1 MD00G1124200.v1.1 MD00G1124500.v1.1 MD00G1124700.v1.1 MD00G1170400.v1.1 MD00G1170700.v1.1 MD01G1002100.v1.1 MD03G1036100.v1.1 MD04G1006600.v1.1 MD04G1006800.v1.1 MD04G1039700.v1.1 MD04G1039900.v1.1 MD05G1189800.v1.1 MD05G1190000.v1.1 MD05G1190200.v1.1 MD05G1190400.v1.1 MD05G1190600.v1.1 MD05G1190700.v1.1 MD05G1190800.v1.1 MD05G1190900.v1.1 MD05G1191200.v1.1 MD05G1191500.v1.1 MD08G1025100.v1.1 MD08G1025500.v1.1 MD08G1094500.v1.1 MD08G1094600.v1.1 MD08G1175000.v1.1 MD08G1175100.v1.1 MD08G1175200.v1.1 MD08G1175300.v1.1 MD08G1175400.v1.1 MD08G1178900.v1.1 MD08G1179000.v1.1 MD08G1179200.v1.1 MD09G1153000.v1.1 MD09G1153100.v1.1 MD09G1153200.v1.1 MD09G1153300.v1.1 MD09G1153400.v1.1 MD09G1153700.v1.1 MD09G1153800.v1.1 MD10G1178100.v1.1 MD10G1178200.v1.1 MD10G1214300.v1.1 MD10G1214500.v1.1 MD10G1214600.v1.1 MD10G1215200.v1.1 MD11G1221700.v1.1 MD12G1229500.v1.1 MD12G1229600.v1.1 MD12G1229700.v1.1 MD13G1018200.v1.1 MD15G1367500.v1.1 MD15G1367600.v1.1 MD15G1367700.v1.1 MD15G1367800.v1.1 MD15G1437200.v1.1 MD15G1437400.v1.1 MD17G1140300.v1.1 MD17G1140400.v1.1 MD17G1153200.v1.1
prunus_persica Prupe.1G510800_v2.0.a1 Prupe.1G513300_v2.0.a1 Prupe.1G513400_v2.0.a1 Prupe.1G514100_v2.0.a1 Prupe.1G514200_v2.0.a1 Prupe.1G515300_v2.0.a1 Prupe.1G515500_v2.0.a1 Prupe.1G515600_v2.0.a1 Prupe.1G515700_v2.0.a1 Prupe.1G515700_v2.0.a1 Prupe.1G515700_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G516000_v2.0.a1 Prupe.2G064900_v2.0.a1 Prupe.3G115800_v2.0.a1 Prupe.3G115800_v2.0.a1 Prupe.3G115800_v2.0.a1 Prupe.3G115900_v2.0.a1 Prupe.3G116000_v2.0.a1 Prupe.3G157900_v2.0.a1 Prupe.3G171200_v2.0.a1 Prupe.3G171300_v2.0.a1 Prupe.4G128800_v2.0.a1 Prupe.4G129000_v2.0.a1 Prupe.4G268100_v2.0.a1 Prupe.4G283700_v2.0.a1 Prupe.6G161700_v2.0.a1 Prupe.6G161700_v2.0.a1 Prupe.6G161700_v2.0.a1 Prupe.7G014300_v2.0.a1 Prupe.7G014400_v2.0.a1 Prupe.8G060800_v2.0.a1 Prupe.8G061100_v2.0.a1 Prupe.8G217000_v2.0.a1 Prupe.8G217100_v2.0.a1 Prupe.8G217100_v2.0.a1 Prupe.8G217200_v2.0.a1 Prupe.8G217300_v2.0.a1 Prupe.8G217400_v2.0.a1 Prupe.8G217400_v2.0.a1 Prupe.8G217600_v2.0.a1 Prupe.8G217700_v2.0.a1 Prupe.8G226900_v2.0.a1
pyrus_communis pycom04g03280 pycom04g03330 pycom05g17120 pycom05g17140 pycom05g17490 pycom05g17510 pycom05g17540 pycom05g17550 pycom05g17570 pycom05g17600 pycom05g17610 pycom05g17640 pycom05g17720 pycom05g17730 pycom05g17780 pycom05g17790 pycom05g17820 pycom08g15350 pycom08g15540 pycom08g15550 pycom08g15560 pycom09g07250 pycom09g07260 pycom10g02200 pycom10g15400 pycom10g18060 pycom10g18090 pycom10g18100 pycom10g18130 pycom10g18180 pycom10g18200 pycom13g01560 pycom13g14430 pycom14g10720 pycom14g10740 pycom15g32940 pycom15g32950 pycom15g32960 pycom15g32970 pycom15g38570 pycom15g38580 pycom17g13340 pycom17g13350 pycom17g13360
rosa_chinensis RchiOBHm_Chr0c16g0499671 RchiOBHm_Chr0c16g0499681 RchiOBHm_Chr0c16g0499691 RchiOBHm_Chr0c16g0499701 RchiOBHm_Chr0c16g0499741 RchiOBHm_Chr0c16g0499761 RchiOBHm_Chr0c16g0499771 RchiOBHm_Chr0c16g0499801 RchiOBHm_Chr0c16g0499831 RchiOBHm_Chr0c16g0499841 RchiOBHm_Chr0c16g0499881 RchiOBHm_Chr0c16g0499891 RchiOBHm_Chr0c16g0499931 RchiOBHm_Chr2g0151181 RchiOBHm_Chr2g0151221 RchiOBHm_Chr2g0151291 RchiOBHm_Chr2g0151311 RchiOBHm_Chr2g0151331 RchiOBHm_Chr2g0151341 RchiOBHm_Chr3g0483131 RchiOBHm_Chr3g0491341 RchiOBHm_Chr3g0493861 RchiOBHm_Chr3g0493881 RchiOBHm_Chr3g0493891 RchiOBHm_Chr4g0403001 RchiOBHm_Chr4g0409861 RchiOBHm_Chr4g0409901 RchiOBHm_Chr4g0409921 RchiOBHm_Chr4g0409931 RchiOBHm_Chr4g0412541 RchiOBHm_Chr4g0442461 RchiOBHm_Chr5g0021681 RchiOBHm_Chr5g0021711 RchiOBHm_Chr5g0023521 RchiOBHm_Chr5g0023721 RchiOBHm_Chr5g0023981 RchiOBHm_Chr5g0024241 RchiOBHm_Chr5g0033191 RchiOBHm_Chr5g0070881 RchiOBHm_Chr5g0070901 RchiOBHm_Chr6g0286931 RchiOBHm_Chr6g0286941 RchiOBHm_Chr6g0286951 RchiOBHm_Chr6g0287011 RchiOBHm_Chr6g0287031 RchiOBHm_Chr6g0287041 RchiOBHm_Chr6g0287061 RchiOBHm_Chr6g0287071 RchiOBHm_Chr6g0287081 RchiOBHm_Chr6g0287091 RchiOBHm_Chr6g0287101 RchiOBHm_Chr6g0287141 RchiOBHm_Chr6g0287151 RchiOBHm_Chr6g0287171 RchiOBHm_Chr6g0311671 RchiOBHm_Chr7g0213681 RchiOBHm_Chr7g0213751 RchiOBHm_Chr7g0213791 RchiOBHm_Chr7g0213801 RchiOBHm_Chr7g0221461 RchiOBHm_Chr7g0221481 RchiOBHm_Chr7g0221491 RchiOBHm_Chr7g0221501 RchiOBHm_Chr7g0221511 RchiOBHm_Chr7g0233271 RchiOBHm_Chr7g0238311 RchiOBHm_Chr7g0239091 RchiOBHm_Chr7g0239121 RchiOBHm_Chr7g0239131 RchiOBHm_Chr7g0239151 RchiOBHm_Chr7g0239161 RchiOBHm_Chr7g0239171 RchiOBHm_Chr7g0239211 RchiOBHm_Chr7g0239221 RchiOBHm_Chr7g0239231 RchiOBHm_Chr7g0239251 RchiOBHm_Chr7g0239641 RchiOBHm_Chr7g0239661 RchiOBHm_Chr7g0239771 RchiOBHm_Chr7g0239791
rosa_laevigata RLG00000000731 RLG00000000733 RLG00000000736 RLG00000000743 RLG00000000744 RLG00000000767 RLG00000000768 RLG00000000769 RLG00000000771 RLG00000000772 RLG00000000773 RLG00000000774 RLG00000000776 RLG00000000777 RLG00000000778 RLG00000000779 RLG00000000780 RLG00000000781 RLG00000000783 RLG00000000920 RLG00000000922 RLG00000000926 RLG00000000930 RLG00000001280 RLG00000001281 RLG00000002778 RLG00000002783 RLG00000002784 RLG00000002789 RLG00000002791 RLG00000002793 RLG00000006009 RLG00000008276 RLG00000008277 RLG00000008513 RLG00000008514 RLG00000008516 RLG00000008517 RLG00000008518 RLG00000008519 RLG00000012519 RLG00000012520 RLG00000012521 RLG00000012523 RLG00000012525 RLG00000012530 RLG00000013262 RLG00000013263 RLG00000013859 RLG00000013861 RLG00000014074 RLG00000018176 RLG00000019276 RLG00000020539 RLG00000020542 RLG00000022691 RLG00000029077 RLG00000029178 RLG00000029180 RLG00000029181 RLG00000032621 RLG00000032622 RLG00000032723 RLG00000032731 RLG00000032753 RLG00000032783 RLG00000032784 RLG00000032786 RLG00000033018 RLG00000033277 RLG00000033342 RLG00000033343 RLG00000034125 RLG00000036163 RLG00000036167 RLG00000036168
rosa_multiflora Rmu_co8056540.1_g000001 Rmu_co8091752.1_g000001 Rmu_co8279983.1_g000001 Rmu_co8282085.1_g000001 Rmu_co8310275.1_g000001 Rmu_co8364577.1_g000001 Rmu_co8381009.1_g000001 Rmu_co8432097.1_g000001 Rmu_sc0000063.1_g000009 Rmu_sc0000063.1_g000013 Rmu_sc0000063.1_g000016 Rmu_sc0000063.1_g000035 Rmu_sc0000063.1_g000036 Rmu_sc0000063.1_g000041 Rmu_sc0000063.1_g000045 Rmu_sc0000101.1_g000007 Rmu_sc0000101.1_g000010 Rmu_sc0000101.1_g000012 Rmu_sc0000101.1_g000016 Rmu_sc0000101.1_g000018 Rmu_sc0000101.1_g000021 Rmu_sc0000328.1_g000017 Rmu_sc0000721.1_g000009 Rmu_sc0000721.1_g000018 Rmu_sc0000977.1_g000012 Rmu_sc0000987.1_g000005 Rmu_sc0000987.1_g000006 Rmu_sc0000987.1_g000007 Rmu_sc0000987.1_g000019 Rmu_sc0001102.1_g000004 Rmu_sc0001175.1_g000005 Rmu_sc0001175.1_g000006 Rmu_sc0001371.1_g000018 Rmu_sc0002298.1_g000006 Rmu_sc0002298.1_g000016 Rmu_sc0002344.1_g000016 Rmu_sc0002516.1_g000002 Rmu_sc0002516.1_g000006 Rmu_sc0002520.1_g000004 Rmu_sc0002942.1_g000023 Rmu_sc0002942.1_g000045 Rmu_sc0002944.1_g000005 Rmu_sc0002944.1_g000006 Rmu_sc0002944.1_g000008 Rmu_sc0002973.1_g000004 Rmu_sc0003006.1_g000017 Rmu_sc0003207.1_g000002 Rmu_sc0003207.1_g000006 Rmu_sc0003207.1_g000021 Rmu_sc0003207.1_g000027 Rmu_sc0003207.1_g000028 Rmu_sc0003207.1_g000029 Rmu_sc0003207.1_g000033 Rmu_sc0003207.1_g000034 Rmu_sc0003314.1_g000037 Rmu_sc0003314.1_g000038 Rmu_sc0003314.1_g000044 Rmu_sc0003500.1_g000046 Rmu_sc0003622.1_g000006 Rmu_sc0003895.1_g000027 Rmu_sc0004175.1_g000002 Rmu_sc0004549.1_g000010 Rmu_sc0004549.1_g000011 Rmu_sc0004605.1_g000003 Rmu_sc0004605.1_g000005 Rmu_sc0004605.1_g000018 Rmu_sc0005102.1_g000002 Rmu_sc0005297.1_g000008 Rmu_sc0005297.1_g000020 Rmu_sc0005494.1_g000004 Rmu_sc0005494.1_g000005 Rmu_sc0005571.1_g000023 Rmu_sc0005837.1_g000008 Rmu_sc0005837.1_g000009 Rmu_sc0005913.1_g000016 Rmu_sc0005913.1_g000023 Rmu_sc0005970.1_g000007 Rmu_sc0005970.1_g000008 Rmu_sc0005979.1_g000009 Rmu_sc0005979.1_g000010 Rmu_sc0005979.1_g000013 Rmu_sc0005979.1_g000022 Rmu_sc0005979.1_g000023 Rmu_sc0005979.1_g000029 Rmu_sc0006380.1_g000005 Rmu_sc0006413.1_g000017 Rmu_sc0006522.1_g000001 Rmu_sc0006522.1_g000012 Rmu_sc0006522.1_g000024 Rmu_sc0006522.1_g000026 Rmu_sc0006624.1_g000004 Rmu_sc0006695.1_g000084 Rmu_sc0006847.1_g000020 Rmu_sc0007340.1_g000001 Rmu_sc0007340.1_g000002 Rmu_sc0007340.1_g000005 Rmu_sc0007802.1_g000021 Rmu_sc0007937.1_g000001 Rmu_sc0007959.1_g000001 Rmu_sc0008101.1_g000016 Rmu_sc0008314.1_g000008 Rmu_sc0008554.1_g000003 Rmu_sc0009418.1_g000006 Rmu_sc0012344.1_g000011 Rmu_sc0012454.1_g000001 Rmu_sc0014162.1_g000019 Rmu_sc0014703.1_g000001 Rmu_sc0016863.1_g000001 Rmu_sc0019500.1_g000002 Rmu_sc0019500.1_g000003 Rmu_sc0022062.1_g000001 Rmu_sc0023638.1_g000002 Rmu_sc0023638.1_g000003 Rmu_sc0023645.1_g000001 Rmu_sc0030525.1_g000001 Rmu_sc0033158.1_g000001 Rmu_sc0033302.1_g000001 Rmu_sc0035631.1_g000001 Rmu_sc0040354.1_g000001 Rmu_sc0040355.1_g000001 Rmu_sc0041511.1_g000001 Rmu_sc0042599.1_g000002 Rmu_ssc0000204.1_g000059 Rmu_ssc0000261.1_g000001 Rmu_ssc0000261.1_g000002 Rmu_ssc0000261.1_g000006
rosa_roxburghii Rroxscaffold_1G00010300 Rroxscaffold_1G00054930 Rroxscaffold_1G00055750 Rroxscaffold_1G00056040 Rroxscaffold_1G00057030 Rroxscaffold_2G00096550 Rroxscaffold_2G00096670 Rroxscaffold_3G00221110 Rroxscaffold_3G00221130 Rroxscaffold_3G00221230 Rroxscaffold_3G00221240 Rroxscaffold_3G00221260 Rroxscaffold_3G00223130 Rroxscaffold_3G00245700 Rroxscaffold_3G00275530 Rroxscaffold_5G00354370 Rroxscaffold_5G00354380 Rroxscaffold_5G00354410 Rroxscaffold_7G00181690 Rroxscaffold_7G00181700 Rroxscaffold_7G00181740 Rroxscaffold_7G00181770 Rroxscaffold_7G00181860
rosa_rugosa Rorug01G0355500 Rorug02G0425400 Rorug03G0204400 Rorug03G0211300 Rorug03G0259200 Rorug04G0080200 Rorug04G0097500 Rorug04G0097500 Rorug04G0097900 Rorug04G0098000 Rorug04G0099200 Rorug04G0099300 Rorug05G0067900 Rorug05G0067900 Rorug05G0068200 Rorug05G0068400 Rorug05G0068600 Rorug05G0068700 Rorug05G0080500 Rorug05G0082700 Rorug05G0082800 Rorug05G0098600 Rorug05G0098600 Rorug05G0098700 Rorug05G0137400 Rorug05G0137500 Rorug05G0137600 Rorug06G0185200 Rorug06G0185200 Rorug06G0185400 Rorug06G0185400 Rorug06G0185600 Rorug06G0185700 Rorug06G0185700 Rorug07G0144000 Rorug07G0144100 Rorug07G0144300 Rorug07G0144400 Rorug07G0144600 Rorug07G0144600 Rorug07G0279700 Rorug07G0311200 Rorug07G0325900 Rorug07G0326000 Rorug07G0326000 Rorug07G0326000 Rorug07G0326100 Rorug07G0326500.1 Rorug07G0326700 Rorug07G0326800 Rorug07G0326900 Rorug07G0326900 Rorug07G0327100 Rorug07G0327100 Rorug07G0327100 Rorug07G0328700 Rorug07G0328800 Rorug07G0329100 Rorug07G0329200 Rorug07G0329300
rosa_samantha Rh1DG123500 Rh2AG486000 Rh2AG486200 Rh2AG486400 Rh2AG486500 Rh2BG498700 Rh3AG298100 Rh3AG298200 Rh4DG153100 Rh4DG399800 Rh5DG168400 Rh5DG172600 Rh6AG297000 Rh6AG297100 Rh6BG301500 Rh6BG301600 Rh6BG301700 Rh6BG302200 Rh6CG042300 Rh7CG497700 Rh7CG497800 Rh7DG424000 Rh7DG465300 Rh7DG465400 Rh7DG465500 Rh7DG465600 Rh7DG465900 Rh7DG466100 Rh7DG466200 Rh7DG466300 Rh7DG468400 Rh7DG468900 Rh7DG469100 Rh7DG469300
rosa_wichuraiana Rw0G000510 Rw0G004040 Rw0G014250 Rw0G015580 Rw2G039810 Rw2G040200 Rw2G040260 Rw3G022850 Rw3G026300 Rw4G004980 Rw4G009400 Rw4G013080 Rw4G033940 Rw5G015020 Rw5G015150 Rw5G015230 Rw5G015470 Rw5G017590 Rw5G020220 Rw5G020970 Rw5G043210 Rw6G012640 Rw6G012790 Rw6G025560 Rw6G025620 Rw6G025660 Rw6G025670 Rw7G023900 Rw7G035820 Rw7G038650 Rw7G038660 Rw7G038770 Rw7G040030 Rw7G040040 Rw7G040050 Rw7G040060 Rw7G040070 Rw7G040080 Rw7G040150 Rw7G040160 Rw7G040170 Rw7G040190 Rw7G040200 Rw7G040210 Rw7G040410 Rw7G040460 Rw7G040510 Rw7G040530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1056
AccII CGCG 1 cut(s) 1869
AciI CCGC 5 cut(s) 84, 713, 1235, 1760, 1867
AclI AACGTT 1 cut(s) 98
AclWI GGATC 1 cut(s) 772
AcsI RAATTY 6 cut(s) 336, 604, 688, 724, 1154, 1860
AcuI CTGAAG 2 cut(s) 41, 1106
AfaI GTAC 4 cut(s) 90, 996, 1440, 1510
AfiI CCNNNNNNNGG 2 cut(s) 719, 1766
AflIII ACRYGT 3 cut(s) 798, 822, 1251
AgeI ACCGGT 1 cut(s) 926
AjnI CCWGG 2 cut(s) 136, 1765
Alw21I GWGCWC 3 cut(s) 768, 1215, 1579
Alw26I GTCTC 4 cut(s) 1440, 1501, 1526, 1668
AlwI GGATC 1 cut(s) 772
AoxI GGCC 3 cut(s) 127, 292, 1222
ApeKI GCWGC 9 cut(s) 57, 373, 376, 486, 539, 630, 651, 715, 972
ApoI RAATTY 6 cut(s) 336, 604, 688, 724, 1154, 1860
AseI ATTAAT 1 cut(s) 446
AsiGI ACCGGT 1 cut(s) 926
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 3 cut(s) 292, 557, 845
AsuC2I CCSGG 1 cut(s) 1671
AsuHPI GGTGA 4 cut(s) 479, 1249, 1419, 1786
AvaII GGWCC 2 cut(s) 557, 845
BanII GRGCYC 2 cut(s) 768, 1215
BauI CACGAG 1 cut(s) 872
BbsI GAAGAC 3 cut(s) 1092, 1123, 1137
Bbv12I GWGCWC 3 cut(s) 768, 1215, 1579
BbvI GCAGC 9 cut(s) 69, 363, 385, 498, 526, 642, 663, 727, 984
BccI CCATC 4 cut(s) 790, 1106, 1353, 1591
BcgI CGANNNNNNTGC 4 cut(s) 61, 95, 1325, 1359
BciT130I CCWGG 2 cut(s) 138, 1767
BclI TGATCA 2 cut(s) 1653, 1791
BcnI CCSGG 1 cut(s) 1671
BcoDI GTCTC 4 cut(s) 1440, 1501, 1526, 1668
BfaI CTAG 3 cut(s) 431, 887, 1646
BfmI CTRYAG 1 cut(s) 1434
BisI GCNGC 9 cut(s) 58, 374, 377, 487, 540, 631, 652, 716, 973
BlpI GCTNAGC 3 cut(s) 323, 1209, 1515
BlsI GCNGC 9 cut(s) 59, 375, 378, 488, 541, 632, 653, 717, 974
BmcAI AGTACT 1 cut(s) 90
Bme1390I CCNGG 3 cut(s) 138, 1671, 1767
Bme18I GGWCC 2 cut(s) 557, 845
BmgT120I GGNCC 3 cut(s) 292, 557, 845
BmiI GGNNCC 2 cut(s) 188, 293
BmrFI CCNGG 3 cut(s) 138, 1671, 1767
BmrI ACTGGG 2 cut(s) 298, 1047
BmsI GCATC 4 cut(s) 87, 1020, 1423, 1675
BmuI ACTGGG 2 cut(s) 298, 1047
BpiI GAAGAC 3 cut(s) 1092, 1123, 1137
BplI GAGNNNNNCTC 2 cut(s) 1665, 1697
BpmI CTGGAG 1 cut(s) 1563
Bpu1102I GCTNAGC 3 cut(s) 323, 1209, 1515
BpuEI CTTGAG 5 cut(s) 166, 200, 337, 1265, 1550
BpuMI CCSGG 1 cut(s) 1671
BsaI GGTCTC 1 cut(s) 1668
BsaJI CCNNGG 3 cut(s) 353, 463, 1064
BsaWI WCCGGW 1 cut(s) 926
BsaXI ACNNNNNCTCC 2 cut(s) 1667, 1697
Bsc4I CCNNNNNNNGG 2 cut(s) 719, 1766
Bse118I RCCGGY 1 cut(s) 926
Bse1I ACTGG 3 cut(s) 293, 295, 1042
Bse3DI GCAATG 2 cut(s) 925, 1195
BseBI CCWGG 2 cut(s) 138, 1767
BseDI CCNNGG 3 cut(s) 353, 463, 1064
BseGI GGATG 5 cut(s) 782, 1011, 1364, 1393, 1666
BseLI CCNNNNNNNGG 2 cut(s) 719, 1766
BseMI GCAATG 2 cut(s) 925, 1195
BseMII CTCAG 4 cut(s) 273, 337, 671, 1200
BseNI ACTGG 3 cut(s) 293, 295, 1042
BseRI GAGGAG 1 cut(s) 1670
BseXI GCAGC 9 cut(s) 69, 363, 385, 498, 526, 642, 663, 727, 984
BsgI GTGCAG 2 cut(s) 139, 604
Bsh1236I CGCG 1 cut(s) 1869
BshFI GGCC 3 cut(s) 129, 294, 1224
BshTI ACCGGT 1 cut(s) 926
BsiHKAI GWGCWC 3 cut(s) 768, 1215, 1579
BsiSI CCGG 2 cut(s) 927, 1671
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 2 cut(s) 719, 1766
BsmAI GTCTC 4 cut(s) 1440, 1501, 1526, 1668
BsmFI GGGAC 1 cut(s) 427
BsmI GAATGC 3 cut(s) 60, 513, 633
BsnI GGCC 3 cut(s) 129, 294, 1224
Bso31I GGTCTC 1 cut(s) 1668
Bsp1286I GDGCHC 3 cut(s) 768, 1215, 1579
Bsp143I GATC 5 cut(s) 365, 676, 777, 1653, 1791
Bsp1720I GCTNAGC 3 cut(s) 323, 1209, 1515
BspACI CCGC 5 cut(s) 84, 713, 1235, 1760, 1867
BspANI GGCC 3 cut(s) 129, 294, 1224
BspCNI CTCAG 4 cut(s) 274, 336, 672, 1201
BspFNI CGCG 1 cut(s) 1869
BspHI TCATGA 1 cut(s) 1417
BspLI GGNNCC 2 cut(s) 188, 293
BspPI GGATC 1 cut(s) 772
BspTNI GGTCTC 1 cut(s) 1668
BsrDI GCAATG 2 cut(s) 925, 1195
BsrFI RCCGGY 1 cut(s) 926
BsrI ACTGG 3 cut(s) 293, 295, 1042
BssAI RCCGGY 1 cut(s) 926
BssECI CCNNGG 3 cut(s) 353, 463, 1064
BssMI GATC 5 cut(s) 365, 676, 777, 1653, 1791
BssSI CACGAG 1 cut(s) 872
BssT1I CCWWGG 1 cut(s) 463
Bst2BI CACGAG 1 cut(s) 872
Bst2UI CCWGG 2 cut(s) 138, 1767
Bst4CI ACNGT 4 cut(s) 357, 480, 814, 1798
Bst6I CTCTTC 3 cut(s) 400, 669, 855
BstAPI GCANNNNNTGC 1 cut(s) 1808
BstC8I GCNNGC 3 cut(s) 1558, 1819, 1823
BstDEI CTNAG 8 cut(s) 163, 282, 323, 535, 680, 1209, 1515, 1744
BstDSI CCRYGG 2 cut(s) 353, 1064
BstF5I GGATG 5 cut(s) 782, 1011, 1364, 1393, 1666
BstFNI CGCG 1 cut(s) 1869
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 5 cut(s) 368, 679, 780, 1656, 1794
BstMAI GTCTC 4 cut(s) 1440, 1501, 1526, 1668
BstMBI GATC 5 cut(s) 365, 676, 777, 1653, 1791
BstMWI GCNNNNNNNGC 4 cut(s) 206, 382, 915, 1808
BstNI CCWGG 2 cut(s) 138, 1767
BstNSI RCATGY 4 cut(s) 383, 802, 826, 1255
BstSCI CCNGG 3 cut(s) 136, 1669, 1765
BstSFI CTRYAG 1 cut(s) 1434
BstUI CGCG 1 cut(s) 1869
BstV1I GCAGC 9 cut(s) 69, 363, 385, 498, 526, 642, 663, 727, 984
BstV2I GAAGAC 3 cut(s) 1092, 1123, 1137
BsuRI GGCC 3 cut(s) 129, 294, 1224
BtgI CCRYGG 2 cut(s) 353, 1064
BtgZI GCGATG 1 cut(s) 1632
BtsCI GGATG 5 cut(s) 782, 1011, 1364, 1393, 1666
BtsIMutI CAGTG 3 cut(s) 302, 559, 692
Cac8I GCNNGC 3 cut(s) 1558, 1819, 1823
CciI TCATGA 1 cut(s) 1417
CfoI GCGC 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 926
Cfr13I GGNCC 3 cut(s) 292, 557, 845
Csp6I GTAC 4 cut(s) 89, 995, 1439, 1509
CspAI ACCGGT 1 cut(s) 926
CviQI GTAC 4 cut(s) 89, 995, 1439, 1509
DdeI CTNAG 8 cut(s) 163, 282, 323, 535, 680, 1209, 1515, 1744
DpnI GATC 5 cut(s) 367, 678, 779, 1655, 1793
DpnII GATC 5 cut(s) 365, 676, 777, 1653, 1791
Eam1104I CTCTTC 3 cut(s) 400, 669, 855
EarI CTCTTC 3 cut(s) 400, 669, 855
EciI GGCGGA 1 cut(s) 99
Ecl136II GAGCTC 2 cut(s) 766, 1213
Eco130I CCWWGG 1 cut(s) 463
Eco147I AGGCCT 1 cut(s) 129
Eco24I GRGCYC 2 cut(s) 768, 1215
Eco31I GGTCTC 1 cut(s) 1668
Eco47I GGWCC 2 cut(s) 557, 845
Eco53kI GAGCTC 2 cut(s) 766, 1213
Eco57I CTGAAG 2 cut(s) 41, 1106
EcoICRI GAGCTC 2 cut(s) 766, 1213
EcoO109I RGGNCCY 1 cut(s) 845
EcoRI GAATTC 1 cut(s) 1154
EcoRII CCWGG 2 cut(s) 136, 1765
EcoT14I CCWWGG 1 cut(s) 463
EcoT22I ATGCAT 3 cut(s) 80, 1402, 1416
EcoT38I GRGCYC 2 cut(s) 768, 1215
ErhI CCWWGG 1 cut(s) 463
FalI AAGNNNNNCTT 4 cut(s) 834, 866, 1451, 1483
FaqI GGGAC 1 cut(s) 427
FauI CCCGC 2 cut(s) 1767, 1874
FauNDI CATATG 1 cut(s) 74
FbaI TGATCA 2 cut(s) 1653, 1791
FblI GTMKAC 1 cut(s) 1056
Fnu4HI GCNGC 9 cut(s) 58, 374, 377, 487, 540, 631, 652, 716, 973
FokI GGATG 5 cut(s) 769, 998, 1371, 1400, 1653
FriOI GRGCYC 2 cut(s) 768, 1215
Fsp4HI GCNGC 9 cut(s) 58, 374, 377, 487, 540, 631, 652, 716, 973
FspBI CTAG 3 cut(s) 431, 887, 1646
GlaI GCGC 1 cut(s) 210
GluI GCNGC 9 cut(s) 58, 374, 377, 487, 540, 631, 652, 716, 973
GsuI CTGGAG 1 cut(s) 1563
HaeIII GGCC 3 cut(s) 129, 294, 1224
HapII CCGG 2 cut(s) 927, 1671
HhaI GCGC 1 cut(s) 211
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HincII GTYRAC 3 cut(s) 441, 820, 1783
HindII GTYRAC 3 cut(s) 441, 820, 1783
HindIII AAGCTT 3 cut(s) 142, 313, 1312
HinfI GANTC 7 cut(s) 659, 682, 748, 883, 1042, 1525, 1831
HpaII CCGG 2 cut(s) 927, 1671
HphI GGTGA 4 cut(s) 479, 1249, 1419, 1786
Hpy188I TCNGA 5 cut(s) 21, 283, 681, 949, 1501
HpyAV CCTTC 1 cut(s) 836
HpyCH4III ACNGT 4 cut(s) 357, 480, 814, 1798
HpyCH4IV ACGT 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 382, 915, 1808
HpyF3I CTNAG 8 cut(s) 163, 282, 323, 535, 680, 1209, 1515, 1744
HpySE526I ACGT 1 cut(s) 98
HspAI GCGC 1 cut(s) 209
Ksp22I TGATCA 2 cut(s) 1653, 1791
Kzo9I GATC 5 cut(s) 365, 676, 777, 1653, 1791
LmnI GCTCC 4 cut(s) 274, 1104, 1218, 1582
Lsp1109I GCAGC 9 cut(s) 69, 363, 385, 498, 526, 642, 663, 727, 984
LweI GCATC 4 cut(s) 87, 1020, 1423, 1675
MaeI CTAG 3 cut(s) 431, 887, 1646
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 254, 1033
MalI GATC 5 cut(s) 367, 678, 779, 1655, 1793
MboI GATC 5 cut(s) 365, 676, 777, 1653, 1791
MboII GAAGA 8 cut(s) 387, 656, 842, 979, 1097, 1128, 1142, 1252
MhlI GDGCHC 3 cut(s) 768, 1215, 1579
MlyI GAGTC 3 cut(s) 653, 691, 877
Mph1103I ATGCAT 3 cut(s) 80, 1402, 1416
MseI TTAA 6 cut(s) 446, 459, 531, 1079, 1350, 1706
MslI CAYNNNNRTG 1 cut(s) 1816
MspA1I CMGCKG 2 cut(s) 193, 376
MspI CCGG 2 cut(s) 927, 1671
MspR9I CCNGG 3 cut(s) 138, 1671, 1767
Mva1269I GAATGC 3 cut(s) 60, 513, 633
MvaI CCWGG 2 cut(s) 138, 1767
MvnI CGCG 1 cut(s) 1869
MwoI GCNNNNNNNGC 4 cut(s) 206, 382, 915, 1808
NciI CCSGG 1 cut(s) 1671
NdeI CATATG 1 cut(s) 74
NdeII GATC 5 cut(s) 365, 676, 777, 1653, 1791
NlaIV GGNNCC 2 cut(s) 188, 293
NsiI ATGCAT 3 cut(s) 80, 1402, 1416
NspI RCATGY 4 cut(s) 383, 802, 826, 1255
PagI TCATGA 1 cut(s) 1417
PceI AGGCCT 1 cut(s) 129
PciI ACATGT 3 cut(s) 798, 822, 1251
PcsI WCGNNNNNNNCGW 1 cut(s) 1614
PctI GAATGC 3 cut(s) 60, 513, 633
PfeI GAWTC 4 cut(s) 748, 1042, 1525, 1831
PfoI TCCNGGA 2 cut(s) 1669, 1765
PinAI ACCGGT 1 cut(s) 926
PkrI GCNGC 9 cut(s) 59, 375, 378, 488, 541, 632, 653, 717, 974
PleI GAGTC 3 cut(s) 653, 690, 877
PpsI GAGTC 3 cut(s) 653, 690, 877
PpuMI RGGWCCY 1 cut(s) 845
PscI ACATGT 3 cut(s) 798, 822, 1251
PshBI ATTAAT 1 cut(s) 446
Psp124BI GAGCTC 2 cut(s) 768, 1215
Psp1406I AACGTT 1 cut(s) 98
Psp5II RGGWCCY 1 cut(s) 845
Psp6I CCWGG 2 cut(s) 136, 1765
PspGI CCWGG 2 cut(s) 136, 1765
PspN4I GGNNCC 2 cut(s) 188, 293
PspPI GGNCC 3 cut(s) 292, 557, 845
PspPPI RGGWCCY 1 cut(s) 845
PvuII CAGCTG 2 cut(s) 193, 376
RsaI GTAC 4 cut(s) 90, 996, 1440, 1510
RsaNI GTAC 4 cut(s) 89, 995, 1439, 1509
RseI CAYNNNNRTG 1 cut(s) 1816
SacI GAGCTC 2 cut(s) 768, 1215
SaqAI TTAA 6 cut(s) 446, 459, 531, 1079, 1350, 1706
SatI GCNGC 9 cut(s) 58, 374, 377, 487, 540, 631, 652, 716, 973
Sau3AI GATC 5 cut(s) 365, 676, 777, 1653, 1791
Sau96I GGNCC 3 cut(s) 292, 557, 845
ScaI AGTACT 1 cut(s) 90
SchI GAGTC 3 cut(s) 653, 691, 877
ScrFI CCNGG 3 cut(s) 138, 1671, 1767
SduI GDGCHC 3 cut(s) 768, 1215, 1579
SfaNI GCATC 4 cut(s) 87, 1020, 1423, 1675
SfcI CTRYAG 1 cut(s) 1434
SinI GGWCC 2 cut(s) 557, 845
SmiMI CAYNNNNRTG 1 cut(s) 1816
SmlI CTYRAG 5 cut(s) 145, 179, 316, 1280, 1529
SmoI CTYRAG 5 cut(s) 145, 179, 316, 1280, 1529
SseBI AGGCCT 1 cut(s) 129
SsiI CCGC 5 cut(s) 84, 713, 1235, 1760, 1867
SspI AATATT 1 cut(s) 1169
SspMI CTAG 3 cut(s) 431, 887, 1646
SstI GAGCTC 2 cut(s) 768, 1215
StuI AGGCCT 1 cut(s) 129
StyD4I CCNGG 3 cut(s) 136, 1669, 1765
StyI CCWWGG 1 cut(s) 463
TaaI ACNGT 4 cut(s) 357, 480, 814, 1798
TaiI ACGT 1 cut(s) 101
TaqI TCGA 8 cut(s) 169, 776, 792, 881, 1290, 1444, 1454, 1843
TatI WGTACW 3 cut(s) 88, 994, 1438
TfiI GAWTC 4 cut(s) 748, 1042, 1525, 1831
Tru1I TTAA 6 cut(s) 446, 459, 531, 1079, 1350, 1706
Tru9I TTAA 6 cut(s) 446, 459, 531, 1079, 1350, 1706
TscAI CASTG 3 cut(s) 302, 559, 699
TseI GCWGC 9 cut(s) 57, 373, 376, 486, 539, 630, 651, 715, 972
TspDTI ATGAA 5 cut(s) 17, 746, 979, 1098, 1143
TspGWI ACGGA 1 cut(s) 933
TspRI CASTG 3 cut(s) 302, 559, 699
VpaK11BI GGWCC 2 cut(s) 557, 845
VspI ATTAAT 1 cut(s) 446
XapI RAATTY 6 cut(s) 336, 604, 688, 724, 1154, 1860
XceI RCATGY 4 cut(s) 383, 802, 826, 1255
XcmI CCANNNNNNNNNTGG 1 cut(s) 1171
XmiI GTMKAC 1 cut(s) 1056
XspI CTAG 3 cut(s) 431, 887, 1646
ZrmI AGTACT 1 cut(s) 90
Zsp2I ATGCAT 3 cut(s) 80, 1402, 1416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.