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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 509 |
| Acc36I | ACCTGC | 1 cut(s) | 509 |
| AccI | GTMKAC | 1 cut(s) | 179 |
| AciI | CCGC | 1 cut(s) | 141 |
| AclWI | GGATC | 1 cut(s) | 460 |
| AcuI | CTGAAG | 1 cut(s) | 305 |
| AgeI | ACCGGT | 1 cut(s) | 120 |
| AgsI | TTSAA | 2 cut(s) | 18, 238 |
| AjnI | CCWGG | 3 cut(s) | 396, 446, 504 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 22, 54 |
| AluBI | AGCT | 4 cut(s) | 13, 46, 314, 373 |
| AluI | AGCT | 4 cut(s) | 13, 46, 314, 373 |
| AlwI | GGATC | 1 cut(s) | 460 |
| AoxI | GGCC | 1 cut(s) | 528 |
| ApeKI | GCWGC | 2 cut(s) | 138, 410 |
| AsiGI | ACCGGT | 1 cut(s) | 120 |
| AspS9I | GGNCC | 5 cut(s) | 118, 325, 394, 502, 528 |
| AsuHPI | GGTGA | 1 cut(s) | 533 |
| AvaII | GGWCC | 4 cut(s) | 118, 325, 394, 502 |
| BbvI | GCAGC | 2 cut(s) | 125, 422 |
| BccI | CCATC | 5 cut(s) | 371, 412, 465, 479, 545 |
| BceAI | ACGGC | 2 cut(s) | 382, 453 |
| BciT130I | CCWGG | 3 cut(s) | 398, 448, 506 |
| BfmI | CTRYAG | 1 cut(s) | 213 |
| BfuAI | ACCTGC | 1 cut(s) | 509 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 366 |
| BisI | GCNGC | 2 cut(s) | 139, 411 |
| BlsI | GCNGC | 2 cut(s) | 140, 412 |
| Bme1390I | CCNGG | 3 cut(s) | 398, 448, 506 |
| Bme18I | GGWCC | 4 cut(s) | 118, 325, 394, 502 |
| BmgT120I | GGNCC | 5 cut(s) | 118, 325, 394, 502, 528 |
| BmrFI | CCNGG | 3 cut(s) | 398, 448, 506 |
| BmsI | GCATC | 1 cut(s) | 342 |
| BsaWI | WCCGGW | 3 cut(s) | 32, 120, 174 |
| Bse118I | RCCGGY | 1 cut(s) | 120 |
| Bse3DI | GCAATG | 2 cut(s) | 64, 140 |
| BseBI | CCWGG | 3 cut(s) | 398, 448, 506 |
| BseGI | GGATG | 2 cut(s) | 193, 388 |
| BseMI | GCAATG | 2 cut(s) | 64, 140 |
| BseXI | GCAGC | 2 cut(s) | 125, 422 |
| BshFI | GGCC | 1 cut(s) | 530 |
| BshTI | ACCGGT | 1 cut(s) | 120 |
| BsiSI | CCGG | 3 cut(s) | 33, 121, 175 |
| BsnI | GGCC | 1 cut(s) | 530 |
| Bsp143I | GATC | 4 cut(s) | 86, 256, 429, 465 |
| BspACI | CCGC | 1 cut(s) | 141 |
| BspANI | GGCC | 1 cut(s) | 530 |
| BspMI | ACCTGC | 1 cut(s) | 509 |
| BspPI | GGATC | 1 cut(s) | 460 |
| BsrDI | GCAATG | 2 cut(s) | 64, 140 |
| BsrFI | RCCGGY | 1 cut(s) | 120 |
| BssAI | RCCGGY | 1 cut(s) | 120 |
| BssMI | GATC | 4 cut(s) | 86, 256, 429, 465 |
| BssNAI | GTATAC | 1 cut(s) | 180 |
| Bst1107I | GTATAC | 1 cut(s) | 180 |
| Bst2UI | CCWGG | 3 cut(s) | 398, 448, 506 |
| Bst6I | CTCTTC | 1 cut(s) | 486 |
| BstC8I | GCNNGC | 3 cut(s) | 11, 104, 371 |
| BstDEI | CTNAG | 1 cut(s) | 42 |
| BstF5I | GGATG | 2 cut(s) | 193, 388 |
| BstKTI | GATC | 4 cut(s) | 89, 259, 432, 468 |
| BstMBI | GATC | 4 cut(s) | 86, 256, 429, 465 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 366 |
| BstNI | CCWGG | 3 cut(s) | 398, 448, 506 |
| BstNSI | RCATGY | 2 cut(s) | 268, 310 |
| BstSCI | CCNGG | 3 cut(s) | 396, 446, 504 |
| BstSFI | CTRYAG | 1 cut(s) | 213 |
| BstV1I | GCAGC | 2 cut(s) | 125, 422 |
| BstX2I | RGATCY | 1 cut(s) | 465 |
| BstYI | RGATCY | 1 cut(s) | 465 |
| BstZ17I | GTATAC | 1 cut(s) | 180 |
| BsuRI | GGCC | 1 cut(s) | 530 |
| BtsCI | GGATG | 2 cut(s) | 193, 388 |
| BveI | ACCTGC | 1 cut(s) | 509 |
| Cac8I | GCNNGC | 3 cut(s) | 11, 104, 371 |
| Cfr10I | RCCGGY | 1 cut(s) | 120 |
| Cfr13I | GGNCC | 5 cut(s) | 118, 325, 394, 502, 528 |
| CspAI | ACCGGT | 1 cut(s) | 120 |
| CviAII | CATG | 4 cut(s) | 49, 130, 265, 307 |
| CviJI | RGCY | 8 cut(s) | 9, 13, 46, 106, 314, 360, 373, 530 |
| CviKI_1 | RGCY | 8 cut(s) | 9, 13, 46, 106, 314, 360, 373, 530 |
| DdeI | CTNAG | 1 cut(s) | 42 |
| DpnI | GATC | 4 cut(s) | 88, 258, 431, 467 |
| DpnII | GATC | 4 cut(s) | 86, 256, 429, 465 |
| Eam1104I | CTCTTC | 1 cut(s) | 486 |
| EarI | CTCTTC | 1 cut(s) | 486 |
| Eco47I | GGWCC | 4 cut(s) | 118, 325, 394, 502 |
| Eco57I | CTGAAG | 1 cut(s) | 305 |
| EcoO109I | RGGNCCY | 3 cut(s) | 325, 394, 502 |
| EcoRII | CCWGG | 3 cut(s) | 396, 446, 504 |
| EcoT22I | ATGCAT | 1 cut(s) | 207 |
| FaeI | CATG | 4 cut(s) | 52, 133, 268, 310 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 416, 448 |
| FatI | CATG | 4 cut(s) | 48, 129, 264, 306 |
| FauI | CCCGC | 1 cut(s) | 134 |
| FauNDI | CATATG | 1 cut(s) | 292 |
| FblI | GTMKAC | 1 cut(s) | 179 |
| Fnu4HI | GCNGC | 2 cut(s) | 139, 411 |
| FokI | GGATG | 2 cut(s) | 180, 395 |
| Fsp4HI | GCNGC | 2 cut(s) | 139, 411 |
| GluI | GCNGC | 2 cut(s) | 139, 411 |
| HaeIII | GGCC | 1 cut(s) | 530 |
| HapII | CCGG | 3 cut(s) | 33, 121, 175 |
| Hin1II | CATG | 4 cut(s) | 52, 133, 268, 310 |
| HinfI | GANTC | 1 cut(s) | 238 |
| HpaII | CCGG | 3 cut(s) | 33, 121, 175 |
| HphI | GGTGA | 1 cut(s) | 533 |
| Hpy166II | GTNNAC | 1 cut(s) | 180 |
| Hpy188I | TCNGA | 1 cut(s) | 470 |
| Hpy188III | TCNNGA | 4 cut(s) | 82, 349, 433, 482 |
| Hpy8I | GTNNAC | 1 cut(s) | 180 |
| HpyAV | CCTTC | 1 cut(s) | 69 |
| HpyCH4V | TGCA | 7 cut(s) | 102, 133, 205, 264, 306, 355, 542 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 366 |
| HpyF3I | CTNAG | 1 cut(s) | 42 |
| Hsp92II | CATG | 4 cut(s) | 52, 133, 268, 310 |
| Kzo9I | GATC | 4 cut(s) | 86, 256, 429, 465 |
| Lsp1109I | GCAGC | 2 cut(s) | 125, 422 |
| LweI | GCATC | 1 cut(s) | 342 |
| MaeIII | GTNAC | 1 cut(s) | 337 |
| MalI | GATC | 4 cut(s) | 88, 258, 431, 467 |
| MboI | GATC | 4 cut(s) | 86, 256, 429, 465 |
| MboII | GAAGA | 5 cut(s) | 70, 308, 427, 475, 503 |
| MflI | RGATCY | 1 cut(s) | 465 |
| MluCI | AATT | 2 cut(s) | 74, 170 |
| MnlI | CCTC | 4 cut(s) | 379, 385, 487, 493 |
| Mph1103I | ATGCAT | 1 cut(s) | 207 |
| MseI | TTAA | 1 cut(s) | 248 |
| MspI | CCGG | 3 cut(s) | 33, 121, 175 |
| MspR9I | CCNGG | 3 cut(s) | 398, 448, 506 |
| MvaI | CCWGG | 3 cut(s) | 398, 448, 506 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 366 |
| NdeI | CATATG | 1 cut(s) | 292 |
| NdeII | GATC | 4 cut(s) | 86, 256, 429, 465 |
| NlaIII | CATG | 4 cut(s) | 52, 133, 268, 310 |
| NsiI | ATGCAT | 1 cut(s) | 207 |
| NspI | RCATGY | 2 cut(s) | 268, 310 |
| PaqCI | CACCTGC | 1 cut(s) | 509 |
| PfeI | GAWTC | 1 cut(s) | 238 |
| PinAI | ACCGGT | 1 cut(s) | 120 |
| PkrI | GCNGC | 2 cut(s) | 140, 412 |
| PpuMI | RGGWCCY | 3 cut(s) | 325, 394, 502 |
| Psp5II | RGGWCCY | 3 cut(s) | 325, 394, 502 |
| Psp6I | CCWGG | 3 cut(s) | 396, 446, 504 |
| PspGI | CCWGG | 3 cut(s) | 396, 446, 504 |
| PspPI | GGNCC | 5 cut(s) | 118, 325, 394, 502, 528 |
| PspPPI | RGGWCCY | 3 cut(s) | 325, 394, 502 |
| PsuI | RGATCY | 1 cut(s) | 465 |
| SaqAI | TTAA | 1 cut(s) | 248 |
| SatI | GCNGC | 2 cut(s) | 139, 411 |
| Sau3AI | GATC | 4 cut(s) | 86, 256, 429, 465 |
| Sau96I | GGNCC | 5 cut(s) | 118, 325, 394, 502, 528 |
| ScrFI | CCNGG | 3 cut(s) | 398, 448, 506 |
| SfaNI | GCATC | 1 cut(s) | 342 |
| SfcI | CTRYAG | 1 cut(s) | 213 |
| SinI | GGWCC | 4 cut(s) | 118, 325, 394, 502 |
| Sse9I | AATT | 2 cut(s) | 74, 170 |
| SsiI | CCGC | 1 cut(s) | 141 |
| StyD4I | CCNGG | 3 cut(s) | 396, 446, 504 |
| TaqI | TCGA | 1 cut(s) | 483 |
| TasI | AATT | 2 cut(s) | 74, 170 |
| TfiI | GAWTC | 1 cut(s) | 238 |
| Tru1I | TTAA | 1 cut(s) | 248 |
| Tru9I | TTAA | 1 cut(s) | 248 |
| TseI | GCWGC | 2 cut(s) | 138, 410 |
| TspDTI | ATGAA | 2 cut(s) | 118, 309 |
| VpaK11BI | GGWCC | 4 cut(s) | 118, 325, 394, 502 |
| XceI | RCATGY | 2 cut(s) | 268, 310 |
| XmiI | GTMKAC | 1 cut(s) | 179 |
| Zsp2I | ATGCAT | 1 cut(s) | 207 |