Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ribosomal_L29 | PF00831 | 8 - 64 | 1.6e-17 | Ribosomal L29 protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 96 |
| AciI | CCGC | 2 cut(s) | 77, 94 |
| AclWI | GGATC | 1 cut(s) | 75 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AfaI | GTAC | 3 cut(s) | 18, 218, 338 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 64 |
| AgeI | ACCGGT | 1 cut(s) | 110 |
| AgsI | TTSAA | 1 cut(s) | 307 |
| AjnI | CCWGG | 2 cut(s) | 263, 294 |
| AluBI | AGCT | 6 cut(s) | 25, 61, 82, 130, 232, 283 |
| AluI | AGCT | 6 cut(s) | 25, 61, 82, 130, 232, 283 |
| Alw21I | GWGCWC | 1 cut(s) | 121 |
| AlwI | GGATC | 1 cut(s) | 75 |
| AoxI | GGCC | 5 cut(s) | 3, 42, 54, 84, 267 |
| ApeKI | GCWGC | 1 cut(s) | 200 |
| AsiGI | ACCGGT | 1 cut(s) | 110 |
| AspS9I | GGNCC | 3 cut(s) | 55, 85, 267 |
| AsuHPI | GGTGA | 2 cut(s) | 100, 277 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BauI | CACGAG | 1 cut(s) | 20 |
| BbsI | GAAGAC | 2 cut(s) | 266, 314 |
| Bbv12I | GWGCWC | 1 cut(s) | 121 |
| BbvCI | CCTCAGC | 1 cut(s) | 26 |
| BbvI | GCAGC | 1 cut(s) | 187 |
| BccI | CCATC | 1 cut(s) | 368 |
| BciT130I | CCWGG | 2 cut(s) | 265, 296 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 365 |
| BisI | GCNGC | 1 cut(s) | 201 |
| BlsI | GCNGC | 1 cut(s) | 202 |
| Bme1390I | CCNGG | 2 cut(s) | 265, 296 |
| BmgT120I | GGNCC | 3 cut(s) | 55, 85, 267 |
| BmrFI | CCNGG | 2 cut(s) | 265, 296 |
| BmsI | GCATC | 1 cut(s) | 308 |
| BpiI | GAAGAC | 2 cut(s) | 266, 314 |
| Bpu10I | CCTNAGC | 2 cut(s) | 26, 165 |
| BpuEI | CTTGAG | 3 cut(s) | 47, 56, 367 |
| BsaJI | CCNNGG | 2 cut(s) | 102, 264 |
| BsaWI | WCCGGW | 1 cut(s) | 110 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 116, 146 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 64 |
| Bse118I | RCCGGY | 1 cut(s) | 110 |
| BseBI | CCWGG | 2 cut(s) | 265, 296 |
| BseDI | CCNNGG | 2 cut(s) | 102, 264 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BseMII | CTCAG | 3 cut(s) | 17, 179, 200 |
| BseRI | GAGGAG | 1 cut(s) | 80 |
| BseXI | GCAGC | 1 cut(s) | 187 |
| BseYI | CCCAGC | 1 cut(s) | 57 |
| Bsh1236I | CGCG | 1 cut(s) | 96 |
| BshFI | GGCC | 5 cut(s) | 5, 44, 56, 86, 269 |
| BshTI | ACCGGT | 1 cut(s) | 110 |
| BsiHKAI | GWGCWC | 1 cut(s) | 121 |
| BsiSI | CCGG | 1 cut(s) | 111 |
| BslFI | GGGAC | 1 cut(s) | 237 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BsmFI | GGGAC | 1 cut(s) | 237 |
| BsnI | GGCC | 5 cut(s) | 5, 44, 56, 86, 269 |
| Bsp1286I | GDGCHC | 1 cut(s) | 121 |
| Bsp1407I | TGTACA | 1 cut(s) | 216 |
| Bsp143I | GATC | 4 cut(s) | 46, 67, 180, 244 |
| BspACI | CCGC | 2 cut(s) | 77, 94 |
| BspANI | GGCC | 5 cut(s) | 5, 44, 56, 86, 269 |
| BspCNI | CTCAG | 3 cut(s) | 18, 178, 199 |
| BspFNI | CGCG | 1 cut(s) | 96 |
| BspPI | GGATC | 1 cut(s) | 75 |
| BsrFI | RCCGGY | 1 cut(s) | 110 |
| BsrGI | TGTACA | 1 cut(s) | 216 |
| BssAI | RCCGGY | 1 cut(s) | 110 |
| BssECI | CCNNGG | 2 cut(s) | 102, 264 |
| BssMI | GATC | 4 cut(s) | 46, 67, 180, 244 |
| BssSI | CACGAG | 1 cut(s) | 20 |
| BssT1I | CCWWGG | 1 cut(s) | 102 |
| Bst2BI | CACGAG | 1 cut(s) | 20 |
| Bst2UI | CCWGG | 2 cut(s) | 265, 296 |
| Bst4CI | ACNGT | 1 cut(s) | 178 |
| Bst6I | CTCTTC | 1 cut(s) | 320 |
| BstAUI | TGTACA | 1 cut(s) | 216 |
| BstC8I | GCNNGC | 1 cut(s) | 84 |
| BstDEI | CTNAG | 3 cut(s) | 26, 165, 186 |
| BstEII | GGTNACC | 1 cut(s) | 106 |
| BstFNI | CGCG | 1 cut(s) | 96 |
| BstKTI | GATC | 4 cut(s) | 49, 70, 183, 247 |
| BstMBI | GATC | 4 cut(s) | 46, 67, 180, 244 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 83, 289, 365 |
| BstNI | CCWGG | 2 cut(s) | 265, 296 |
| BstPI | GGTNACC | 1 cut(s) | 106 |
| BstSCI | CCNGG | 2 cut(s) | 263, 294 |
| BstUI | CGCG | 1 cut(s) | 96 |
| BstV1I | GCAGC | 1 cut(s) | 187 |
| BstV2I | GAAGAC | 2 cut(s) | 266, 314 |
| BstX2I | RGATCY | 1 cut(s) | 67 |
| BstYI | RGATCY | 1 cut(s) | 67 |
| BsuRI | GGCC | 5 cut(s) | 5, 44, 56, 86, 269 |
| BtsIMutI | CAGTG | 1 cut(s) | 183 |
| Cac8I | GCNNGC | 1 cut(s) | 84 |
| Cfr10I | RCCGGY | 1 cut(s) | 110 |
| Cfr13I | GGNCC | 3 cut(s) | 55, 85, 267 |
| CseI | GACGC | 1 cut(s) | 85 |
| Csp6I | GTAC | 3 cut(s) | 17, 217, 337 |
| CspAI | ACCGGT | 1 cut(s) | 110 |
| CviQI | GTAC | 3 cut(s) | 17, 217, 337 |
| DdeI | CTNAG | 3 cut(s) | 26, 165, 186 |
| DpnI | GATC | 4 cut(s) | 48, 69, 182, 246 |
| DpnII | GATC | 4 cut(s) | 46, 67, 180, 244 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 320 |
| EarI | CTCTTC | 1 cut(s) | 320 |
| EciI | GGCGGA | 1 cut(s) | 92 |
| Eco130I | CCWWGG | 1 cut(s) | 102 |
| Eco91I | GGTNACC | 1 cut(s) | 106 |
| EcoO65I | GGTNACC | 1 cut(s) | 106 |
| EcoRII | CCWGG | 2 cut(s) | 263, 294 |
| EcoT14I | CCWWGG | 1 cut(s) | 102 |
| ErhI | CCWWGG | 1 cut(s) | 102 |
| FaiI | YATR | 1 cut(s) | 370 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 218, 250 |
| FaqI | GGGAC | 1 cut(s) | 237 |
| Fnu4HI | GCNGC | 1 cut(s) | 201 |
| Fsp4HI | GCNGC | 1 cut(s) | 201 |
| GluI | GCNGC | 1 cut(s) | 201 |
| GsaI | CCCAGC | 1 cut(s) | 61 |
| HaeIII | GGCC | 5 cut(s) | 5, 44, 56, 86, 269 |
| HapII | CCGG | 1 cut(s) | 111 |
| HgaI | GACGC | 1 cut(s) | 85 |
| HincII | GTYRAC | 1 cut(s) | 174 |
| HindII | GTYRAC | 1 cut(s) | 174 |
| HinfI | GANTC | 1 cut(s) | 9 |
| HpaII | CCGG | 1 cut(s) | 111 |
| HphI | GGTGA | 2 cut(s) | 100, 277 |
| Hpy166II | GTNNAC | 3 cut(s) | 19, 174, 217 |
| Hpy188I | TCNGA | 1 cut(s) | 189 |
| Hpy188III | TCNNGA | 1 cut(s) | 242 |
| Hpy8I | GTNNAC | 3 cut(s) | 19, 174, 217 |
| Hpy99I | CGWCG | 1 cut(s) | 101 |
| HpyAV | CCTTC | 2 cut(s) | 34, 190 |
| HpyCH4III | ACNGT | 1 cut(s) | 178 |
| HpyCH4IV | ACGT | 1 cut(s) | 316 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 83, 289, 365 |
| HpyF3I | CTNAG | 3 cut(s) | 26, 165, 186 |
| HpySE526I | ACGT | 1 cut(s) | 316 |
| Kzo9I | GATC | 4 cut(s) | 46, 67, 180, 244 |
| LmnI | GCTCC | 2 cut(s) | 79, 116 |
| LpnPI | CCDG | 9 cut(s) | 19, 68, 71, 124, 152, 250, 277, 281, 308 |
| Lsp1109I | GCAGC | 1 cut(s) | 187 |
| LweI | GCATC | 1 cut(s) | 308 |
| MaeII | ACGT | 1 cut(s) | 316 |
| MaeIII | GTNAC | 1 cut(s) | 106 |
| MalI | GATC | 4 cut(s) | 48, 69, 182, 246 |
| MboI | GATC | 4 cut(s) | 46, 67, 180, 244 |
| MboII | GAAGA | 5 cut(s) | 239, 271, 319, 334, 337 |
| MflI | RGATCY | 1 cut(s) | 67 |
| MhlI | GDGCHC | 1 cut(s) | 121 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MnlI | CCTC | 8 cut(s) | 21, 98, 101, 144, 201, 249, 321, 342 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 1 cut(s) | 141 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 1 cut(s) | 111 |
| MspR9I | CCNGG | 2 cut(s) | 265, 296 |
| MvaI | CCWGG | 2 cut(s) | 265, 296 |
| MvnI | CGCG | 1 cut(s) | 96 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 83, 289, 365 |
| NdeII | GATC | 4 cut(s) | 46, 67, 180, 244 |
| NmuCI | GTSAC | 1 cut(s) | 106 |
| PfeI | GAWTC | 1 cut(s) | 9 |
| PinAI | ACCGGT | 1 cut(s) | 110 |
| PkrI | GCNGC | 1 cut(s) | 202 |
| Psp6I | CCWGG | 2 cut(s) | 263, 294 |
| PspEI | GGTNACC | 1 cut(s) | 106 |
| PspFI | CCCAGC | 1 cut(s) | 57 |
| PspGI | CCWGG | 2 cut(s) | 263, 294 |
| PspPI | GGNCC | 3 cut(s) | 55, 85, 267 |
| PsuI | RGATCY | 1 cut(s) | 67 |
| RsaI | GTAC | 3 cut(s) | 18, 218, 338 |
| RsaNI | GTAC | 3 cut(s) | 17, 217, 337 |
| SaqAI | TTAA | 1 cut(s) | 141 |
| SatI | GCNGC | 1 cut(s) | 201 |
| Sau3AI | GATC | 4 cut(s) | 46, 67, 180, 244 |
| Sau96I | GGNCC | 3 cut(s) | 55, 85, 267 |
| ScrFI | CCNGG | 2 cut(s) | 265, 296 |
| SduI | GDGCHC | 1 cut(s) | 121 |
| SfaNI | GCATC | 1 cut(s) | 308 |
| SgrAI | CRCCGGYG | 1 cut(s) | 110 |
| SmlI | CTYRAG | 3 cut(s) | 62, 71, 346 |
| SmoI | CTYRAG | 3 cut(s) | 62, 71, 346 |
| SsiI | CCGC | 2 cut(s) | 77, 94 |
| StyD4I | CCNGG | 2 cut(s) | 263, 294 |
| StyI | CCWWGG | 1 cut(s) | 102 |
| TaaI | ACNGT | 1 cut(s) | 178 |
| TaiI | ACGT | 1 cut(s) | 319 |
| TaqI | TCGA | 1 cut(s) | 38 |
| TatI | WGTACW | 2 cut(s) | 216, 336 |
| TfiI | GAWTC | 1 cut(s) | 9 |
| Tru1I | TTAA | 1 cut(s) | 141 |
| Tru9I | TTAA | 1 cut(s) | 141 |
| TscAI | CASTG | 1 cut(s) | 183 |
| TseFI | GTSAC | 1 cut(s) | 106 |
| TseI | GCWGC | 1 cut(s) | 200 |
| Tsp45I | GTSAC | 1 cut(s) | 106 |
| TspRI | CASTG | 1 cut(s) | 183 |