RchiOBHm_Chr4g0409901

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000011
Physical Location & Seq
Reverse (-)
33502786 .. 33507658
4873 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38087

Sequence Viewer

Length: 4227 bp
ATGAGATCCTCAACTATTGAAAGAGTATGCCCTCTAGTTTATTGCCTTTTCTTGTATGTTCACCTACTTTCATCACAAAACTACTTTCCACATTTTGCTTCCGCTAGTTCAACTACCGAAGCAAACGCTCTTCTCGAATGGAAAGCCAGCTTTCTAAATCAAACCTCCCACAATAACCAGCTCAAGGATTGGATTTACCTTCCCAAGACTAATACCAATGACACCAATTCTTCCAGAAACCCCAAAGCAAAGGAGGCAAGCCCATGTATTTGGGCTGGTATTTCATGCAATGCTGCTGGGAGTGTCACCAACATAACCATTGCCAGTTTTGGTATACAAGGTACGCTACATGAATTCTCATTCTTGTCCTTCCCCAATCTCGAATATCTTGATATCAGCGTCAATAATCTCTTTGATGTCATCCCACCTCAAATCAGTTCGCTCTCAAAACTCCTTCATCTTGACCTCTCTAATAACCAGTTCTCCGGGAGAATTCCATCAGAAATTGGTCTTCAGAGAAATCTTACAATTCTCTATCTCCACAAGAATAATCTTTCTGATGTTATTCCTCCTTCGTTAGGGAACCTGAAATCGCTTGTGAATCTATCATTGAGTTATAATCTACTCAATGGTTCAATTCCAGCATCACTTGGTGATCTCATAAACATTAAAAGCCTCCACCTCAGCCAAAATAACCTCCATGGCAACATTCCAAAAGAATTAGGGAACCTGAAATCTTTGGTGGATCTAAGGTTGGCCATCAATCAACTCAATGGTTCAATTCCGACAACATTGGGTGATCTAACCAACCTTACCACTCTCTATCTCTATTCAAATAATCTCTCAGGCACCATTCCAAAAGAGTTAGGGAATCTGAAATATTTGGTGAATCTAGATTTGAGCACCAATCAACTCAGTGGTTCAATTCCCAAGACATTGGGTAATCTGACCAACCTTACTAGTCTTAATCTCTATTTTAATAATCTTTCTAGCACCATTCCAAAAGAGTTAGGGAACTTGAAATCTTTGGTGTATCTAGCATTAGACTACAATCAACTCAGTGGTTCAATTCCGACAACATTGGGTGATCTGACCAACCTTACCAATCTTTATCTAGATTCAAATAATCTCTCTGGCACCATTCCAAATGAGTTGGGGAACTTGAAATCTTTGGTGATTCTATGGTTGAGCATCAATCAACTCAGTGGTTCAATTCCGACAATATTGGGTGATCTGACCAACCTTACCACTCTTTATCTCCATTCAAATAACCTCTCTAGCACCATTCCAAAAGAGTTAGGGAACTTGAAATCTTTGGTGGATCTAGAATTGAGCAACAATCATCTCAGTGGTTCAATTCCGACAACATTGGGTGATCTGACCGACCTTACCACTCTTTATCTAGATTCAAATAATCTCTCTGACACCATTCCAAAAGAGTTAGGGAACCTGAAATCTTTGGTGGATCTAGAATTGAGCAACAATCATCTCAGTGGTTCAATTCCGACAACATTGGGTGATCTGACCGACCTTACCACTCTTTATCTAGATTCAAATAATCTCTCTGGCACCATTCCGAAAGAGTTAGGGAACCTGAAATCTTTGGTGGATTTAGAATTGAGCAACAATCATCTCAGTGGTTCAATTCCGACAACATTGGGTGATCTGACCGACCTTACCACTCTTTATCTCTATTCAAATAACCTCTCTGGCACCATTCCAAAAGAGTTAGGGAACCTGAAATCTTTGGTGGATCTAGAATTGAGCAACAATCATCTCAGTGGTTCAATTCCGACAACATTGGGTGATCTGACCGACCTTACCACTCTTTATCTAGATTCAAATAATCTCTCTGGCACCATTCCAAAAGAGTTAGGGATTCTGAAATCTTTGGTGGATCTAGAATTGAGCAACAATCATCTCAGTGGTTCAATTCCGACAACATTGGGTGATCTGACCGACCTTACCACTCTTTATCTCCATTCAAATAACCTCTCTGGCACCATTCCAAAAGAGTTAGGGAACCTGAAATCTTTGGTGGGTCTAGAATTGAGCTTCAATCATCTTAGTGGTTCAATTCCGAGAACATTGGGTGATCTGACCAACCTTACTGCTCTCCATCTCGGTTCAAATAATCTCTCTGGCACCATTCCAAAAGAGTTAGGGAACCTGAAATCTTTGGTGGATCTCGAATTGAGCATCAATCATCTCAGTGGTTCAATTCCGACAACATTGGGTGATCTGACCAACCTTACTGCTCTCTATCTCGGTTCAAATAATCTCTCTGGCACCATTCCAACAGAGTTAGGGAATCTGAAATATTTGGTGGGTCTAGATTTGTGCTACAATCAACTCAATGGTTCAATTCTGTCAACATTGGGTGATCTGACCCACCTTACCACTCTTTATCTTTATTCAAATAAACTCTCTGGCACCATTCCAAAAGAGTTAGGGAACTTGAAATCTTTGGCAGATCTACAATTGAGCATCAATCAACTTACTGGTTCTATACCAGCCGAGATTGGAAACGCAACCCAAATTAATGTGCTGGATCTTTCATCAAATGGTTTAGTCGGCACAATTCCAAAGGAGATTGGGGGATTAACTTCAATGGTGAAACTGATGTTGGATGGCAATCAACTTTCAGGTCGTGTCCCTTTAGAGTTGAAATCATTAATTGATCTAGAATATCTTGATGTATCAGCAAATAAATTGAACGATTCAATTCCAAGCTTTGTAGGTGACTTTCATAAGTTATATTACTTGAATTTGAGCAACAACAAGTTCAGTCAAGCAATTCCATTTCAGTTGGGGAAGTTATTTCAACTATCCCAACTAGATTTGAGTTTTAACGCACTTGAAGGTCATATAGCATCAGATGTAAGCAAAATGCAGAGTCTAGAGATACTTAATATATCCCACAACAATCTTTTTGGTTTCATTCCAACAAGTATGGAAGACATGCATGGGCTAACGTATGTTGACATATCCTACAATCACTTGGAAGGTCCACTTCCCAACATCAAAGCATTTCTAGCTGCTCCTCCAGAAGCATTGCAAGGCAACAAGGGCTTGTGTGGCAACTCAAGTTTTTTGCAACTTTGCAATAATGAAAGCCCAAAAAAAGACCATAAACTCATACTTCTGATGATCTTCCTTGTTCTTGGAGCAATTGCACTTCTAGCCTTTATATTTGCTTTTGTAGCAAAAAGGAAAAAGAAGCATAAGCATCTAGAAGAAAAAAATAGGGATGACGAAATTTCTTTTTCGATATTGAAGTTTGATGGGAAGACGATGTATGAGGAAATCATAAGGGCAACAAAAGATTTTGATTCTATGTATTGCATAGGGAAGGGAGAACATGGAACTGTCTACAAAGCAACTTTGTCAAATGCTAACACAGTAGCTGTGAAGAAACTCCATTTGTTATGCGCTGATGGCGAGAATCTTCAAAAAGAATTCTTGAATGAAATCAGGGCACTAACTGAGATGCGACACCGAAATATTGTGAAGCTTTATGGTTTTTGTTCACATAGGTGTCACTCATTTTTGGTGTATGAGTATCTTGAGAAGGGTAGTTTGGCCAGAGTGTTGAGCAAGGTTCAGGAAGCTAAAGAACTAGGGTGGAGTGAAAGGGTGAATATCGTGAAAGGTGTAGTTCTTGCCTTGTGTTACATGCATCATGATTGCATGCCACCAATTGTACATCGGGATATATCGAGCAAGAACATTTTACTGGATGCAGAGTATGAGGCTTGCGTTTCAGACTTTGGCACTGCTAAGTTCTTAAACCCAAACTCAGCTAATTGGACTGCCCTTGTAGGCACATATGGATATGTTGCACCAGAGCTTGCTTATACAATGGAAGTGAATGAGAAGTGTGACGTTTATAGCTTTGGAGTGTTGACATTGGAAATAATTATGGGAAGACATCCTGGAGATCTTCTGTCATCTTTATCATCGTCCTCATCAACTGCATTACCTGCCATTGAAATGCCAATTGTGGATGTTTTAGACCAACGCATATCACCTCCCACTCGTCAAGTTACAGGGGAAGTGCTCTCTATTGTGAAGATAGCATTTTCATGCATGAATTCCAGTCCTCAATTTCGTCCAACAATGAAACAAGTTTATCAACAATTGGAAACTCAAAGGCTACATTTGTCAAGGCCACTACATATGATAACATGTGGTGAATTGCTTGCTCTCAAGGGTTTGACTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1408

Amino Acids

153.7

Weight (kDa)

5.72

Isoelectric Point (pI)

23.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 126 - 228 7.5e-07 Leucine-rich repeat region
LRR_8 PF13855 173 - 233 1.2e-06 Leucine rich repeat
LRR_14 PF23598 216 - 329 6.6e-12 Leucine-rich repeat region
LRR_8 PF13855 295 - 353 1.6e-06 Leucine rich repeat
LRR_14 PF23598 331 - 422 8.1e-10 Leucine-rich repeat region
LRR_8 PF13855 413 - 473 6.6e-08 Leucine rich repeat
LRR_14 PF23598 419 - 518 1.4e-10 Leucine-rich repeat region
LRR_8 PF13855 438 - 497 2.4e-06 Leucine rich repeat
LRR_8 PF13855 463 - 521 6.6e-08 Leucine rich repeat
LRR_14 PF23598 471 - 566 1.1e-10 Leucine-rich repeat region
LRR_8 PF13855 486 - 545 1.9e-06 Leucine rich repeat
LRR_14 PF23598 506 - 614 2e-10 Leucine-rich repeat region
LRR_8 PF13855 511 - 569 6.6e-07 Leucine rich repeat
LRR_8 PF13855 534 - 593 1.6e-06 Leucine rich repeat
LRR_8 PF13855 559 - 617 7e-07 Leucine rich repeat
LRR_14 PF23598 571 - 662 5.1e-09 Leucine-rich repeat region
LRR_14 PF23598 619 - 709 2.1e-08 Leucine-rich repeat region
LRR_8 PF13855 630 - 689 4.1e-06 Leucine rich repeat
LRR_14 PF23598 667 - 756 3.1e-09 Leucine-rich repeat region
LRR_8 PF13855 701 - 761 4.5e-06 Leucine rich repeat
LRR_14 PF23598 755 - 829 1e-05 Leucine-rich repeat region
LRR_14 PF23598 815 - 915 3.6e-06 Leucine-rich repeat region
LRR_8 PF13855 942 - 1001 9e-07 Leucine rich repeat
Pkinase PF00069 1115 - 1380 1.1e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1116 - 1381 9.3e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08850 AT4G08850
fragaria_vesca FvH4_2g07670 FvH4_2g07680 FvH4_2g20750 FvH4_2g20750 FvH4_2g20790 FvH4_3g14180 FvH4_3g14180 FvH4_3g14230 FvH4_3g14330 FvH4_3g14340 FvH4_3g14340 FvH4_3g14360 FvH4_3g14370 FvH4_3g14371 FvH4_3g16410 FvH4_4g04540 FvH4_4g33281 FvH4_5g24120 FvH4_5g36290 FvH4_5g37480 FvH4_5g37490 FvH4_5g37510 FvH4_5g37510 FvH4_5g37520 FvH4_5g37560 FvH4_5g37580 FvH4_5g37590 FvH4_5g37590 FvH4_5g37590 FvH4_5g37790 FvH4_5g37800 FvH4_6g38120
malus_domestica MD00G1009600.v1.1 MD00G1061200.v1.1 MD00G1123900.v1.1 MD00G1124200.v1.1 MD00G1124500.v1.1 MD00G1124700.v1.1 MD00G1170400.v1.1 MD00G1170700.v1.1 MD01G1002100.v1.1 MD03G1036100.v1.1 MD04G1006600.v1.1 MD04G1006800.v1.1 MD04G1039700.v1.1 MD04G1039900.v1.1 MD05G1189800.v1.1 MD05G1190000.v1.1 MD05G1190200.v1.1 MD05G1190400.v1.1 MD05G1190600.v1.1 MD05G1190700.v1.1 MD05G1190800.v1.1 MD05G1190900.v1.1 MD05G1191200.v1.1 MD05G1191500.v1.1 MD08G1025100.v1.1 MD08G1025500.v1.1 MD08G1094500.v1.1 MD08G1094600.v1.1 MD08G1175000.v1.1 MD08G1175100.v1.1 MD08G1175200.v1.1 MD08G1175300.v1.1 MD08G1175400.v1.1 MD08G1178900.v1.1 MD08G1179000.v1.1 MD08G1179200.v1.1 MD09G1153000.v1.1 MD09G1153100.v1.1 MD09G1153200.v1.1 MD09G1153300.v1.1 MD09G1153400.v1.1 MD09G1153700.v1.1 MD09G1153800.v1.1 MD10G1178100.v1.1 MD10G1178200.v1.1 MD10G1214300.v1.1 MD10G1214500.v1.1 MD10G1214600.v1.1 MD10G1215200.v1.1 MD11G1221700.v1.1 MD12G1229500.v1.1 MD12G1229600.v1.1 MD12G1229700.v1.1 MD13G1018200.v1.1 MD15G1367500.v1.1 MD15G1367600.v1.1 MD15G1367700.v1.1 MD15G1367800.v1.1 MD15G1437200.v1.1 MD15G1437400.v1.1 MD17G1140300.v1.1 MD17G1140400.v1.1 MD17G1153200.v1.1
prunus_persica Prupe.1G510800_v2.0.a1 Prupe.1G513300_v2.0.a1 Prupe.1G513400_v2.0.a1 Prupe.1G514100_v2.0.a1 Prupe.1G514200_v2.0.a1 Prupe.1G515300_v2.0.a1 Prupe.1G515500_v2.0.a1 Prupe.1G515600_v2.0.a1 Prupe.1G515700_v2.0.a1 Prupe.1G515700_v2.0.a1 Prupe.1G515700_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G515900_v2.0.a1 Prupe.1G516000_v2.0.a1 Prupe.2G064900_v2.0.a1 Prupe.3G115800_v2.0.a1 Prupe.3G115800_v2.0.a1 Prupe.3G115800_v2.0.a1 Prupe.3G115900_v2.0.a1 Prupe.3G116000_v2.0.a1 Prupe.3G157900_v2.0.a1 Prupe.3G171200_v2.0.a1 Prupe.3G171300_v2.0.a1 Prupe.4G128800_v2.0.a1 Prupe.4G129000_v2.0.a1 Prupe.4G268100_v2.0.a1 Prupe.4G283700_v2.0.a1 Prupe.6G161700_v2.0.a1 Prupe.6G161700_v2.0.a1 Prupe.6G161700_v2.0.a1 Prupe.7G014300_v2.0.a1 Prupe.7G014400_v2.0.a1 Prupe.8G060800_v2.0.a1 Prupe.8G061100_v2.0.a1 Prupe.8G217000_v2.0.a1 Prupe.8G217100_v2.0.a1 Prupe.8G217100_v2.0.a1 Prupe.8G217200_v2.0.a1 Prupe.8G217300_v2.0.a1 Prupe.8G217400_v2.0.a1 Prupe.8G217400_v2.0.a1 Prupe.8G217600_v2.0.a1 Prupe.8G217700_v2.0.a1 Prupe.8G226900_v2.0.a1
pyrus_communis pycom04g03280 pycom04g03330 pycom05g17120 pycom05g17140 pycom05g17490 pycom05g17510 pycom05g17540 pycom05g17550 pycom05g17570 pycom05g17600 pycom05g17610 pycom05g17640 pycom05g17720 pycom05g17730 pycom05g17780 pycom05g17790 pycom05g17820 pycom08g15350 pycom08g15540 pycom08g15550 pycom08g15560 pycom09g07250 pycom09g07260 pycom10g02200 pycom10g15400 pycom10g18060 pycom10g18090 pycom10g18100 pycom10g18130 pycom10g18180 pycom10g18200 pycom13g01560 pycom13g14430 pycom14g10720 pycom14g10740 pycom15g32940 pycom15g32950 pycom15g32960 pycom15g32970 pycom15g38570 pycom15g38580 pycom17g13340 pycom17g13350 pycom17g13360
rosa_chinensis RchiOBHm_Chr0c16g0499671 RchiOBHm_Chr0c16g0499681 RchiOBHm_Chr0c16g0499691 RchiOBHm_Chr0c16g0499701 RchiOBHm_Chr0c16g0499741 RchiOBHm_Chr0c16g0499761 RchiOBHm_Chr0c16g0499771 RchiOBHm_Chr0c16g0499801 RchiOBHm_Chr0c16g0499831 RchiOBHm_Chr0c16g0499841 RchiOBHm_Chr0c16g0499881 RchiOBHm_Chr0c16g0499891 RchiOBHm_Chr0c16g0499931 RchiOBHm_Chr2g0151181 RchiOBHm_Chr2g0151221 RchiOBHm_Chr2g0151291 RchiOBHm_Chr2g0151311 RchiOBHm_Chr2g0151331 RchiOBHm_Chr2g0151341 RchiOBHm_Chr3g0483131 RchiOBHm_Chr3g0491341 RchiOBHm_Chr3g0493861 RchiOBHm_Chr3g0493881 RchiOBHm_Chr3g0493891 RchiOBHm_Chr4g0403001 RchiOBHm_Chr4g0409861 RchiOBHm_Chr4g0409901 RchiOBHm_Chr4g0409921 RchiOBHm_Chr4g0409931 RchiOBHm_Chr4g0412541 RchiOBHm_Chr4g0442461 RchiOBHm_Chr5g0021681 RchiOBHm_Chr5g0021711 RchiOBHm_Chr5g0023521 RchiOBHm_Chr5g0023721 RchiOBHm_Chr5g0023981 RchiOBHm_Chr5g0024241 RchiOBHm_Chr5g0033191 RchiOBHm_Chr5g0070881 RchiOBHm_Chr5g0070901 RchiOBHm_Chr6g0286931 RchiOBHm_Chr6g0286941 RchiOBHm_Chr6g0286951 RchiOBHm_Chr6g0287011 RchiOBHm_Chr6g0287031 RchiOBHm_Chr6g0287041 RchiOBHm_Chr6g0287061 RchiOBHm_Chr6g0287071 RchiOBHm_Chr6g0287081 RchiOBHm_Chr6g0287091 RchiOBHm_Chr6g0287101 RchiOBHm_Chr6g0287141 RchiOBHm_Chr6g0287151 RchiOBHm_Chr6g0287171 RchiOBHm_Chr6g0311671 RchiOBHm_Chr7g0213681 RchiOBHm_Chr7g0213751 RchiOBHm_Chr7g0213791 RchiOBHm_Chr7g0213801 RchiOBHm_Chr7g0221461 RchiOBHm_Chr7g0221481 RchiOBHm_Chr7g0221491 RchiOBHm_Chr7g0221501 RchiOBHm_Chr7g0221511 RchiOBHm_Chr7g0233271 RchiOBHm_Chr7g0238311 RchiOBHm_Chr7g0239091 RchiOBHm_Chr7g0239121 RchiOBHm_Chr7g0239131 RchiOBHm_Chr7g0239151 RchiOBHm_Chr7g0239161 RchiOBHm_Chr7g0239171 RchiOBHm_Chr7g0239211 RchiOBHm_Chr7g0239221 RchiOBHm_Chr7g0239231 RchiOBHm_Chr7g0239251 RchiOBHm_Chr7g0239641 RchiOBHm_Chr7g0239661 RchiOBHm_Chr7g0239771 RchiOBHm_Chr7g0239791
rosa_laevigata RLG00000000731 RLG00000000733 RLG00000000736 RLG00000000743 RLG00000000744 RLG00000000767 RLG00000000768 RLG00000000769 RLG00000000771 RLG00000000772 RLG00000000773 RLG00000000774 RLG00000000776 RLG00000000777 RLG00000000778 RLG00000000779 RLG00000000780 RLG00000000781 RLG00000000783 RLG00000000920 RLG00000000922 RLG00000000926 RLG00000000930 RLG00000001280 RLG00000001281 RLG00000002778 RLG00000002783 RLG00000002784 RLG00000002789 RLG00000002791 RLG00000002793 RLG00000006009 RLG00000008276 RLG00000008277 RLG00000008513 RLG00000008514 RLG00000008516 RLG00000008517 RLG00000008518 RLG00000008519 RLG00000012519 RLG00000012520 RLG00000012521 RLG00000012523 RLG00000012525 RLG00000012530 RLG00000013262 RLG00000013263 RLG00000013859 RLG00000013861 RLG00000014074 RLG00000018176 RLG00000019276 RLG00000020539 RLG00000020542 RLG00000022691 RLG00000029077 RLG00000029178 RLG00000029180 RLG00000029181 RLG00000032621 RLG00000032622 RLG00000032723 RLG00000032731 RLG00000032753 RLG00000032783 RLG00000032784 RLG00000032786 RLG00000033018 RLG00000033277 RLG00000033342 RLG00000033343 RLG00000034125 RLG00000036163 RLG00000036167 RLG00000036168
rosa_multiflora Rmu_co8056540.1_g000001 Rmu_co8091752.1_g000001 Rmu_co8279983.1_g000001 Rmu_co8282085.1_g000001 Rmu_co8310275.1_g000001 Rmu_co8364577.1_g000001 Rmu_co8381009.1_g000001 Rmu_co8432097.1_g000001 Rmu_sc0000063.1_g000009 Rmu_sc0000063.1_g000013 Rmu_sc0000063.1_g000016 Rmu_sc0000063.1_g000035 Rmu_sc0000063.1_g000036 Rmu_sc0000063.1_g000041 Rmu_sc0000063.1_g000045 Rmu_sc0000101.1_g000007 Rmu_sc0000101.1_g000010 Rmu_sc0000101.1_g000012 Rmu_sc0000101.1_g000016 Rmu_sc0000101.1_g000018 Rmu_sc0000101.1_g000021 Rmu_sc0000328.1_g000017 Rmu_sc0000721.1_g000009 Rmu_sc0000721.1_g000018 Rmu_sc0000977.1_g000012 Rmu_sc0000987.1_g000005 Rmu_sc0000987.1_g000006 Rmu_sc0000987.1_g000007 Rmu_sc0000987.1_g000019 Rmu_sc0001102.1_g000004 Rmu_sc0001175.1_g000005 Rmu_sc0001175.1_g000006 Rmu_sc0001371.1_g000018 Rmu_sc0002298.1_g000006 Rmu_sc0002298.1_g000016 Rmu_sc0002344.1_g000016 Rmu_sc0002516.1_g000002 Rmu_sc0002516.1_g000006 Rmu_sc0002520.1_g000004 Rmu_sc0002942.1_g000023 Rmu_sc0002942.1_g000045 Rmu_sc0002944.1_g000005 Rmu_sc0002944.1_g000006 Rmu_sc0002944.1_g000008 Rmu_sc0002973.1_g000004 Rmu_sc0003006.1_g000017 Rmu_sc0003207.1_g000002 Rmu_sc0003207.1_g000006 Rmu_sc0003207.1_g000021 Rmu_sc0003207.1_g000027 Rmu_sc0003207.1_g000028 Rmu_sc0003207.1_g000029 Rmu_sc0003207.1_g000033 Rmu_sc0003207.1_g000034 Rmu_sc0003314.1_g000037 Rmu_sc0003314.1_g000038 Rmu_sc0003314.1_g000044 Rmu_sc0003500.1_g000046 Rmu_sc0003622.1_g000006 Rmu_sc0003895.1_g000027 Rmu_sc0004175.1_g000002 Rmu_sc0004549.1_g000010 Rmu_sc0004549.1_g000011 Rmu_sc0004605.1_g000003 Rmu_sc0004605.1_g000005 Rmu_sc0004605.1_g000018 Rmu_sc0005102.1_g000002 Rmu_sc0005297.1_g000008 Rmu_sc0005297.1_g000020 Rmu_sc0005494.1_g000004 Rmu_sc0005494.1_g000005 Rmu_sc0005571.1_g000023 Rmu_sc0005837.1_g000008 Rmu_sc0005837.1_g000009 Rmu_sc0005913.1_g000016 Rmu_sc0005913.1_g000023 Rmu_sc0005970.1_g000007 Rmu_sc0005970.1_g000008 Rmu_sc0005979.1_g000009 Rmu_sc0005979.1_g000010 Rmu_sc0005979.1_g000013 Rmu_sc0005979.1_g000022 Rmu_sc0005979.1_g000023 Rmu_sc0005979.1_g000029 Rmu_sc0006380.1_g000005 Rmu_sc0006413.1_g000017 Rmu_sc0006522.1_g000001 Rmu_sc0006522.1_g000012 Rmu_sc0006522.1_g000024 Rmu_sc0006522.1_g000026 Rmu_sc0006624.1_g000004 Rmu_sc0006695.1_g000084 Rmu_sc0006847.1_g000020 Rmu_sc0007340.1_g000001 Rmu_sc0007340.1_g000002 Rmu_sc0007340.1_g000005 Rmu_sc0007802.1_g000021 Rmu_sc0007937.1_g000001 Rmu_sc0007959.1_g000001 Rmu_sc0008101.1_g000016 Rmu_sc0008314.1_g000008 Rmu_sc0008554.1_g000003 Rmu_sc0009418.1_g000006 Rmu_sc0012344.1_g000011 Rmu_sc0012454.1_g000001 Rmu_sc0014162.1_g000019 Rmu_sc0014703.1_g000001 Rmu_sc0016863.1_g000001 Rmu_sc0019500.1_g000002 Rmu_sc0019500.1_g000003 Rmu_sc0022062.1_g000001 Rmu_sc0023638.1_g000002 Rmu_sc0023638.1_g000003 Rmu_sc0023645.1_g000001 Rmu_sc0030525.1_g000001 Rmu_sc0033158.1_g000001 Rmu_sc0033302.1_g000001 Rmu_sc0035631.1_g000001 Rmu_sc0040354.1_g000001 Rmu_sc0040355.1_g000001 Rmu_sc0041511.1_g000001 Rmu_sc0042599.1_g000002 Rmu_ssc0000204.1_g000059 Rmu_ssc0000261.1_g000001 Rmu_ssc0000261.1_g000002 Rmu_ssc0000261.1_g000006
rosa_roxburghii Rroxscaffold_1G00010300 Rroxscaffold_1G00054930 Rroxscaffold_1G00055750 Rroxscaffold_1G00056040 Rroxscaffold_1G00057030 Rroxscaffold_2G00096550 Rroxscaffold_2G00096670 Rroxscaffold_3G00221110 Rroxscaffold_3G00221130 Rroxscaffold_3G00221230 Rroxscaffold_3G00221240 Rroxscaffold_3G00221260 Rroxscaffold_3G00223130 Rroxscaffold_3G00245700 Rroxscaffold_3G00275530 Rroxscaffold_5G00354370 Rroxscaffold_5G00354380 Rroxscaffold_5G00354410 Rroxscaffold_7G00181690 Rroxscaffold_7G00181700 Rroxscaffold_7G00181740 Rroxscaffold_7G00181770 Rroxscaffold_7G00181860
rosa_rugosa Rorug01G0355500 Rorug02G0425400 Rorug03G0204400 Rorug03G0211300 Rorug03G0259200 Rorug04G0080200 Rorug04G0097500 Rorug04G0097500 Rorug04G0097900 Rorug04G0098000 Rorug04G0099200 Rorug04G0099300 Rorug05G0067900 Rorug05G0067900 Rorug05G0068200 Rorug05G0068400 Rorug05G0068600 Rorug05G0068700 Rorug05G0080500 Rorug05G0082700 Rorug05G0082800 Rorug05G0098600 Rorug05G0098600 Rorug05G0098700 Rorug05G0137400 Rorug05G0137500 Rorug05G0137600 Rorug06G0185200 Rorug06G0185200 Rorug06G0185400 Rorug06G0185400 Rorug06G0185600 Rorug06G0185700 Rorug06G0185700 Rorug07G0144000 Rorug07G0144100 Rorug07G0144300 Rorug07G0144400 Rorug07G0144600 Rorug07G0144600 Rorug07G0279700 Rorug07G0311200 Rorug07G0325900 Rorug07G0326000 Rorug07G0326000 Rorug07G0326000 Rorug07G0326100 Rorug07G0326500.1 Rorug07G0326700 Rorug07G0326800 Rorug07G0326900 Rorug07G0326900 Rorug07G0327100 Rorug07G0327100 Rorug07G0327100 Rorug07G0328700 Rorug07G0328800 Rorug07G0329100 Rorug07G0329200 Rorug07G0329300
rosa_samantha Rh1DG123500 Rh2AG486000 Rh2AG486200 Rh2AG486400 Rh2AG486500 Rh2BG498700 Rh3AG298100 Rh3AG298200 Rh4DG153100 Rh4DG399800 Rh5DG168400 Rh5DG172600 Rh6AG297000 Rh6AG297100 Rh6BG301500 Rh6BG301600 Rh6BG301700 Rh6BG302200 Rh6CG042300 Rh7CG497700 Rh7CG497800 Rh7DG424000 Rh7DG465300 Rh7DG465400 Rh7DG465500 Rh7DG465600 Rh7DG465900 Rh7DG466100 Rh7DG466200 Rh7DG466300 Rh7DG468400 Rh7DG468900 Rh7DG469100 Rh7DG469300
rosa_wichuraiana Rw0G000510 Rw0G004040 Rw0G014250 Rw0G015580 Rw2G039810 Rw2G040200 Rw2G040260 Rw3G022850 Rw3G026300 Rw4G004980 Rw4G009400 Rw4G013080 Rw4G033940 Rw5G015020 Rw5G015150 Rw5G015230 Rw5G015470 Rw5G017590 Rw5G020220 Rw5G020970 Rw5G043210 Rw6G012640 Rw6G012790 Rw6G025560 Rw6G025620 Rw6G025660 Rw6G025670 Rw7G023900 Rw7G035820 Rw7G038650 Rw7G038660 Rw7G038770 Rw7G040030 Rw7G040040 Rw7G040050 Rw7G040060 Rw7G040070 Rw7G040080 Rw7G040150 Rw7G040160 Rw7G040170 Rw7G040190 Rw7G040200 Rw7G040210 Rw7G040410 Rw7G040460 Rw7G040510 Rw7G040530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
Acc36I ACCTGC 1 cut(s) 3991
AccB1I GGYRCC 9 cut(s) 848, 1136, 1568, 1712, 1856, 2000, 2144, 2288, 2432
AccI GTMKAC 2 cut(s) 334, 3372
AciI CCGC 1 cut(s) 102
AclWI GGATC 7 cut(s) 753, 1329, 1473, 1761, 1905, 2193, 2559
AcoI YGGCCR 2 cut(s) 756, 3582
AcsI RAATTY 6 cut(s) 353, 492, 2767, 3258, 3458, 4093
AcuI CTGAAG 1 cut(s) 497
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 2 cut(s) 343, 3705
AfiI CCNNNNNNNGG 2 cut(s) 184, 578
AflIII ACRYGT 1 cut(s) 4187
AhlI ACTAGT 1 cut(s) 959
AjnI CCWGG 1 cut(s) 3934
AjuI GAANNNNNNNTTGG 4 cut(s) 2609, 2641, 3563, 3595
AleI CACNNNNGTG 1 cut(s) 3535
Alw21I GWGCWC 2 cut(s) 905, 4062
AlwI GGATC 7 cut(s) 753, 1329, 1473, 1761, 1905, 2193, 2559
AlwNI CAGNNNCTG 1 cut(s) 3407
AoxI GGCC 3 cut(s) 756, 3582, 4169
ApeKI GCWGC 2 cut(s) 293, 3038
ApoI RAATTY 6 cut(s) 353, 492, 2767, 3258, 3458, 4093
AseI ATTAAT 2 cut(s) 2541, 2675
AspLEI GCGC 1 cut(s) 3434
AspS9I GGNCC 1 cut(s) 3008
AsuC2I CCSGG 1 cut(s) 487
AvaII GGWCC 1 cut(s) 3008
BaeGI GKGCMC 1 cut(s) 3481
BalI TGGCCA 2 cut(s) 758, 3584
BanI GGYRCC 9 cut(s) 848, 1136, 1568, 1712, 1856, 2000, 2144, 2288, 2432
BbsI GAAGAC 4 cut(s) 503, 2964, 3296, 3934
Bbv12I GWGCWC 2 cut(s) 905, 4062
BbvCI CCTCAGC 1 cut(s) 683
BbvI GCAGC 2 cut(s) 280, 3025
BccI CCATC 6 cut(s) 505, 767, 2127, 2624, 3278, 3431
BciT130I CCWGG 1 cut(s) 3936
BcnI CCSGG 1 cut(s) 487
BcuI ACTAGT 1 cut(s) 959
BfuAI ACCTGC 1 cut(s) 3991
BglII AGATCT 2 cut(s) 2473, 3940
BisI GCNGC 2 cut(s) 294, 3039
BlsI GCNGC 2 cut(s) 295, 3040
Bme1390I CCNGG 2 cut(s) 487, 3936
Bme18I GGWCC 1 cut(s) 3008
BmgT120I GGNCC 1 cut(s) 3008
BmrFI CCNGG 2 cut(s) 487, 3936
BmsI GCATC 9 cut(s) 653, 1200, 2208, 2496, 2882, 3238, 3480, 3688, 3730
BpiI GAAGAC 4 cut(s) 503, 2964, 3296, 3934
BpmI CTGGAG 2 cut(s) 3030, 3957
Bpu10I CCTNAGC 1 cut(s) 683
BpuEI CTTGAG 4 cut(s) 167, 3070, 3587, 4193
BpuMI CCSGG 1 cut(s) 487
BsaBI GATNNNNATC 1 cut(s) 2634
BsaJI CCNNGG 1 cut(s) 700
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 578
Bse1I ACTGG 5 cut(s) 324, 478, 2506, 3741, 4098
Bse3DI GCAATG 3 cut(s) 295, 318, 3053
Bse8I GATNNNNATC 1 cut(s) 2634
BseBI CCWGG 1 cut(s) 3936
BseDI CCNNGG 1 cut(s) 700
BseGI GGATG 6 cut(s) 420, 2635, 3256, 3745, 3931, 4012
BseJI GATNNNNATC 1 cut(s) 2634
BseLI CCNNNNNNNGG 2 cut(s) 184, 578
BseMI GCAATG 3 cut(s) 295, 318, 3053
BseNI ACTGG 5 cut(s) 324, 478, 2506, 3741, 4098
BseRI GAGGAG 1 cut(s) 3033
BseSI GKGCMC 1 cut(s) 3481
BseXI GCAGC 2 cut(s) 280, 3025
BseYI CCCAGC 1 cut(s) 296
BshFI GGCC 3 cut(s) 758, 3584, 4171
BshNI GGYRCC 9 cut(s) 848, 1136, 1568, 1712, 1856, 2000, 2144, 2288, 2432
BsiHKAI GWGCWC 2 cut(s) 905, 4062
BsiSI CCGG 1 cut(s) 486
BslFI GGGAC 1 cut(s) 2639
BslI CCNNNNNNNGG 2 cut(s) 184, 578
BsmFI GGGAC 1 cut(s) 2639
BsnI GGCC 3 cut(s) 758, 3584, 4171
Bsp1286I GDGCHC 3 cut(s) 905, 3481, 4062
Bsp1407I TGTACA 1 cut(s) 3703
Bsp19I CCATGG 1 cut(s) 700
BspACI CCGC 1 cut(s) 102
BspANI GGCC 3 cut(s) 758, 3584, 4171
BspHI TCATGA 1 cut(s) 3682
BspMI ACCTGC 1 cut(s) 3991
BspPI GGATC 7 cut(s) 753, 1329, 1473, 1761, 1905, 2193, 2559
BspQI GCTCTTC 1 cut(s) 135
BspT107I GGYRCC 9 cut(s) 848, 1136, 1568, 1712, 1856, 2000, 2144, 2288, 2432
BsrDI GCAATG 3 cut(s) 295, 318, 3053
BsrGI TGTACA 1 cut(s) 3703
BsrI ACTGG 5 cut(s) 324, 478, 2506, 3741, 4098
BssECI CCNNGG 1 cut(s) 700
BssNAI GTATAC 1 cut(s) 335
BssT1I CCWWGG 1 cut(s) 700
Bst1107I GTATAC 1 cut(s) 335
Bst2UI CCWGG 1 cut(s) 3936
Bst4CI ACNGT 2 cut(s) 3370, 3403
Bst6I CTCTTC 1 cut(s) 135
BstAPI GCANNNNNTGC 1 cut(s) 3983
BstAUI TGTACA 1 cut(s) 3703
BstC8I GCNNGC 6 cut(s) 148, 259, 3692, 3757, 3852, 4203
BstDSI CCRYGG 1 cut(s) 700
BstENI CCTNNNNNAGG 1 cut(s) 576
BstF5I GGATG 6 cut(s) 420, 2635, 3256, 3745, 3931, 4012
BstHHI GCGC 1 cut(s) 3434
BstMWI GCNNNNNNNGC 8 cut(s) 254, 3035, 3069, 3078, 3182, 3203, 3438, 3983
BstNI CCWGG 1 cut(s) 3936
BstNSI RCATGY 4 cut(s) 2965, 3679, 3694, 4191
BstSCI CCNGG 2 cut(s) 485, 3934
BstSLI GKGCMC 1 cut(s) 3481
BstV1I GCAGC 2 cut(s) 280, 3025
BstV2I GAAGAC 4 cut(s) 503, 2964, 3296, 3934
BstXI CCANNNNNNTGG 2 cut(s) 270, 937
BstZ17I GTATAC 1 cut(s) 335
BsuRI GGCC 3 cut(s) 758, 3584, 4171
BtgI CCRYGG 1 cut(s) 700
BtsCI GGATG 6 cut(s) 420, 2635, 3256, 3745, 3931, 4012
BtsI GCAGTG 1 cut(s) 3774
BveI ACCTGC 1 cut(s) 3991
Cac8I GCNNGC 6 cut(s) 148, 259, 3692, 3757, 3852, 4203
CaiI CAGNNNCTG 1 cut(s) 3407
CciI TCATGA 1 cut(s) 3682
CfoI GCGC 1 cut(s) 3434
Cfr13I GGNCC 1 cut(s) 3008
CseI GACGC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 342, 3704
CviQI GTAC 2 cut(s) 342, 3704
DraIII CACNNNGTG 1 cut(s) 653
EaeI YGGCCR 2 cut(s) 756, 3582
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 700
Eco32I GATATC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 3008
Eco57I CTGAAG 1 cut(s) 497
EcoNI CCTNNNNNAGG 1 cut(s) 576
EcoRI GAATTC 4 cut(s) 353, 492, 3458, 4093
EcoRII CCWGG 1 cut(s) 3934
EcoRV GATATC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 700
EcoT22I ATGCAT 3 cut(s) 2967, 3681, 4091
ErhI CCWWGG 1 cut(s) 700
FalI AAGNNNNNCTT 2 cut(s) 2997, 3029
FaqI GGGAC 1 cut(s) 2639
FauNDI CATATG 2 cut(s) 3829, 4179
FblI GTMKAC 2 cut(s) 334, 3372
Fnu4HI GCNGC 2 cut(s) 294, 3039
FokI GGATG 6 cut(s) 407, 2642, 3263, 3752, 3918, 4019
Fsp4HI GCNGC 2 cut(s) 294, 3039
GlaI GCGC 1 cut(s) 3433
GluI GCNGC 2 cut(s) 294, 3039
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 2 cut(s) 3030, 3957
HaeIII GGCC 3 cut(s) 758, 3584, 4171
HapII CCGG 1 cut(s) 486
HgaI GACGC 1 cut(s) 388
HhaI GCGC 1 cut(s) 3434
Hin6I GCGC 1 cut(s) 3432
HinP1I GCGC 1 cut(s) 3432
HincII GTYRAC 3 cut(s) 2373, 2983, 3906
HindII GTYRAC 3 cut(s) 2373, 2983, 3906
HindIII AAGCTT 2 cut(s) 2731, 3512
HpaII CCGG 1 cut(s) 486
Hpy166II GTNNAC 8 cut(s) 61, 335, 2373, 2983, 3011, 3373, 3530, 3906
Hpy8I GTNNAC 8 cut(s) 61, 335, 2373, 2983, 3011, 3373, 3530, 3906
HpyAV CCTTC 8 cut(s) 209, 379, 464, 582, 2855, 2999, 3346, 3565
HpyCH4III ACNGT 2 cut(s) 3370, 3403
HpyCH4IV ACGT 2 cut(s) 2975, 3885
HpyF10VI GCNNNNNNNGC 8 cut(s) 254, 3035, 3069, 3078, 3182, 3203, 3438, 3983
HpySE526I ACGT 2 cut(s) 2975, 3885
HspAI GCGC 1 cut(s) 3432
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 3046, 3167
Lsp1109I GCAGC 2 cut(s) 280, 3025
LweI GCATC 9 cut(s) 653, 1200, 2208, 2496, 2882, 3238, 3480, 3688, 3730
MaeII ACGT 2 cut(s) 2975, 3885
MaeIII GTNAC 6 cut(s) 304, 2741, 3539, 3671, 3881, 4045
MfeI CAATTG 5 cut(s) 2480, 3171, 3699, 3999, 4139
MhlI GDGCHC 3 cut(s) 905, 3481, 4062
MlsI TGGCCA 2 cut(s) 758, 3584
MluNI TGGCCA 2 cut(s) 758, 3584
MlyI GAGTC 1 cut(s) 2905
Mox20I TGGCCA 2 cut(s) 758, 3584
Mph1103I ATGCAT 3 cut(s) 2967, 3681, 4091
MscI TGGCCA 2 cut(s) 758, 3584
MseI TTAA 9 cut(s) 669, 966, 978, 2541, 2603, 2675, 2850, 2910, 3788
Msp20I TGGCCA 2 cut(s) 758, 3584
MspI CCGG 1 cut(s) 486
MspR9I CCNGG 2 cut(s) 487, 3936
MunI CAATTG 5 cut(s) 2480, 3171, 3699, 3999, 4139
MvaI CCWGG 1 cut(s) 3936
MwoI GCNNNNNNNGC 8 cut(s) 254, 3035, 3069, 3078, 3182, 3203, 3438, 3983
NciI CCSGG 1 cut(s) 487
NcoI CCATGG 1 cut(s) 700
NdeI CATATG 2 cut(s) 3829, 4179
NmeAIII GCCGAG 1 cut(s) 2542
NmuCI GTSAC 4 cut(s) 304, 2741, 3539, 3881
NsiI ATGCAT 3 cut(s) 2967, 3681, 4091
NspI RCATGY 4 cut(s) 2965, 3679, 3694, 4191
OliI CACNNNNGTG 1 cut(s) 3535
PaeI GCATGC 1 cut(s) 3694
PagI TCATGA 1 cut(s) 3682
PciI ACATGT 1 cut(s) 4187
PciSI GCTCTTC 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PfoI TCCNGGA 2 cut(s) 485, 3934
PkrI GCNGC 2 cut(s) 295, 3040
PleI GAGTC 1 cut(s) 2904
PpsI GAGTC 1 cut(s) 2904
PscI ACATGT 1 cut(s) 4187
PshBI ATTAAT 2 cut(s) 2541, 2675
PsiI TTATAA 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 3934
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 3934
PspPI GGNCC 1 cut(s) 3008
PstNI CAGNNNCTG 1 cut(s) 3407
RsaI GTAC 2 cut(s) 343, 3705
RsaNI GTAC 2 cut(s) 342, 3704
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 9 cut(s) 669, 966, 978, 2541, 2603, 2675, 2850, 2910, 3788
SatI GCNGC 2 cut(s) 294, 3039
Sau96I GGNCC 1 cut(s) 3008
SchI GAGTC 1 cut(s) 2905
ScrFI CCNGG 2 cut(s) 487, 3936
SduI GDGCHC 3 cut(s) 905, 3481, 4062
SfaNI GCATC 9 cut(s) 653, 1200, 2208, 2496, 2882, 3238, 3480, 3688, 3730
SinI GGWCC 1 cut(s) 3008
SmlI CTYRAG 4 cut(s) 182, 3085, 3566, 4208
SmoI CTYRAG 4 cut(s) 182, 3085, 3566, 4208
SpeI ACTAGT 1 cut(s) 959
SphI GCATGC 1 cut(s) 3694
SsiI CCGC 1 cut(s) 102
SspI AATATT 4 cut(s) 881, 1224, 2321, 3505
StyD4I CCNGG 2 cut(s) 485, 3934
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 2 cut(s) 3370, 3403
TaiI ACGT 2 cut(s) 2978, 3888
TaqI TCGA 5 cut(s) 135, 381, 2190, 3269, 3719
TaqII GACCGA 5 cut(s) 1397, 1541, 1685, 1829, 1973
TatI WGTACW 1 cut(s) 3703
Tru1I TTAA 9 cut(s) 669, 966, 978, 2541, 2603, 2675, 2850, 2910, 3788
Tru9I TTAA 9 cut(s) 669, 966, 978, 2541, 2603, 2675, 2850, 2910, 3788
TseFI GTSAC 4 cut(s) 304, 2741, 3539, 3881
TseI GCWGC 2 cut(s) 293, 3038
Tsp45I GTSAC 4 cut(s) 304, 2741, 3539, 3881
VpaK11BI GGWCC 1 cut(s) 3008
VspI ATTAAT 2 cut(s) 2541, 2675
XagI CCTNNNNNAGG 1 cut(s) 576
XapI RAATTY 6 cut(s) 353, 492, 2767, 3258, 3458, 4093
XceI RCATGY 4 cut(s) 2965, 3679, 3694, 4191
XmiI GTMKAC 2 cut(s) 334, 3372
Zsp2I ATGCAT 3 cut(s) 2967, 3681, 4091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.