Prupe.8G086900_v2.0.a1

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001043
Physical Location & Seq
Forward (+)
11969885 .. 11971829
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G086900.1

Sequence Viewer

Length: 885 bp
ATGGAGATTCCGGAACGCAACCGCGAACCCTTAGACATACCGGAAGGAAGTCGTAAGGATGACTTTGAAGAAAAGGTAAACCCCTTCCATGAAGCTGGAAACCATGATGATGGTGATAGAGGTGGATTGGAAGGAGCGGTTCGCTCTAATTCTTCAGTTAGTTCCCTAAATTTAGATATTCCTTCCGTATTTGATCGTTGTTTAGAAGACGATTGTGAAATTTGTTTTGAGGTGGAGAAAAGTTTTGATTTTGACAATGTATATGGTGAGAGTAAGCAAGATGAATCTAGTGTAATCTTGAAAGCGGTGGATCAAGAGAAGGTTGGGTCTGAACTTTTGAAGGAACACAATCCATACAAGTTTGAAGGCAAGGTGATACAAGAAAGTCTTGAAGGAACCATTAGAGATGAGATGACTTCTTGTGATACTTCTAAGTATGTTGATTTTCTTGGAGTTGATGCTTTTGTTTTGAAGATTGCCAAAAACTTCGTTGATCGTGTCAATCTAATGGCTTTTGGATTGAACAGTTTTTGGGCTGCGAGGTTGTATACAGTACATAACTTGAAGTGTTCTAGAAGGATTAAATATTCTAAGTATCTATATCTTTGGAGTGGGAAGGTTCAATTTCAAGGCCAAAGTTCTATAGACAGTTTATGTAAGTGGAGGTTGTGTTTGGACAGTTTTCAGCAAAAGGTTGGAATTAAAGGACGAATTCTTCACAATCCGGTGGAATTGACGCAAGAAAATAAACATAAGTATTCAAGAGCAGTTCGATATTCAAAAAGTTTCAAGCTTCTCATGGAGTATATTCAACATACCTCTTTGTTTGGAAAGGAAGAATTCAGTTTCAAGTTTCTCATGGAGTCTTCGTTGATAACAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

295

Amino Acids

33.89

Weight (kDa)

5.52

Isoelectric Point (pI)

32.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 137
AccI GTMKAC 1 cut(s) 548
AccII CGCG 1 cut(s) 24
AccIII TCCGGA 1 cut(s) 10
AciI CCGC 3 cut(s) 22, 137, 305
AclWI GGATC 1 cut(s) 318
AcsI RAATTY 4 cut(s) 169, 219, 711, 839
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 1 cut(s) 555
AluBI AGCT 2 cut(s) 95, 793
AluI AGCT 2 cut(s) 95, 793
AlwI GGATC 1 cut(s) 318
Aor13HI TCCGGA 1 cut(s) 10
AoxI GGCC 1 cut(s) 631
ApeKI GCWGC 1 cut(s) 536
ApoI RAATTY 4 cut(s) 169, 219, 711, 839
AsuHPI GGTGA 3 cut(s) 125, 278, 385
BbsI GAAGAC 2 cut(s) 213, 858
BbvI GCAGC 1 cut(s) 523
BccI CCATC 1 cut(s) 104
BfaI CTAG 2 cut(s) 288, 573
BfmI CTRYAG 1 cut(s) 642
BisI GCNGC 1 cut(s) 537
BlsI GCNGC 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 397
BmsI GCATC 1 cut(s) 448
BpiI GAAGAC 2 cut(s) 213, 858
BsaWI WCCGGW 3 cut(s) 10, 40, 724
BsaXI ACNNNNNCTCC 4 cut(s) 655, 685, 854, 884
BseAI TCCGGA 1 cut(s) 10
BseGI GGATG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 523
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 633
BsiSI CCGG 3 cut(s) 11, 41, 725
BsnI GGCC 1 cut(s) 633
Bsp13I TCCGGA 1 cut(s) 10
Bsp143I GATC 3 cut(s) 193, 310, 493
BspACI CCGC 3 cut(s) 22, 137, 305
BspANI GGCC 1 cut(s) 633
BspEI TCCGGA 1 cut(s) 10
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 397
BspPI GGATC 1 cut(s) 318
BsrBI CCGCTC 1 cut(s) 137
BssMI GATC 3 cut(s) 193, 310, 493
BssNAI GTATAC 1 cut(s) 549
Bst1107I GTATAC 1 cut(s) 549
Bst4CI ACNGT 5 cut(s) 527, 553, 650, 680, 880
BstDEI CTNAG 3 cut(s) 31, 432, 591
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 3 cut(s) 196, 313, 496
BstMBI GATC 3 cut(s) 193, 310, 493
BstSFI CTRYAG 1 cut(s) 642
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 523
BstV2I GAAGAC 2 cut(s) 213, 858
BstXI CCANNNNNNTGG 2 cut(s) 95, 110
BstZ17I GTATAC 1 cut(s) 549
BsuRI GGCC 1 cut(s) 633
BtsCI GGATG 1 cut(s) 64
CseI GACGC 1 cut(s) 745
Csp6I GTAC 1 cut(s) 554
CviAII CATG 4 cut(s) 89, 104, 799, 859
CviJI RGCY 5 cut(s) 95, 512, 536, 633, 793
CviKI_1 RGCY 5 cut(s) 95, 512, 536, 633, 793
CviQI GTAC 1 cut(s) 554
DdeI CTNAG 3 cut(s) 31, 432, 591
DpnI GATC 3 cut(s) 195, 312, 495
DpnII GATC 3 cut(s) 193, 310, 493
Eco57I CTGAAG 1 cut(s) 138
EcoRI GAATTC 2 cut(s) 711, 839
FaeI CATG 4 cut(s) 92, 107, 802, 862
FalI AAGNNNNNCTT 4 cut(s) 47, 79, 372, 404
FatI CATG 4 cut(s) 88, 103, 798, 858
FblI GTMKAC 1 cut(s) 548
Fnu4HI GCNGC 1 cut(s) 537
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 537
FspBI CTAG 2 cut(s) 288, 573
GluI GCNGC 1 cut(s) 537
HaeIII GGCC 1 cut(s) 633
HapII CCGG 3 cut(s) 11, 41, 725
HgaI GACGC 1 cut(s) 745
Hin1II CATG 4 cut(s) 92, 107, 802, 862
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 3 cut(s) 7, 284, 863
HpaII CCGG 3 cut(s) 11, 41, 725
HphI GGTGA 3 cut(s) 125, 278, 385
Hpy166II GTNNAC 2 cut(s) 79, 549
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 6 cut(s) 11, 298, 314, 389, 573, 762
Hpy8I GTNNAC 2 cut(s) 79, 549
HpyCH4III ACNGT 5 cut(s) 527, 553, 650, 680, 880
HpyF3I CTNAG 3 cut(s) 31, 432, 591
Hsp92II CATG 4 cut(s) 92, 107, 802, 862
Kpn2I TCCGGA 1 cut(s) 10
Kzo9I GATC 3 cut(s) 193, 310, 493
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 4 cut(s) 24, 54, 81, 738
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 1 cut(s) 448
MaeI CTAG 2 cut(s) 288, 573
MalI GATC 3 cut(s) 195, 312, 495
MbiI CCGCTC 1 cut(s) 137
MboI GATC 3 cut(s) 193, 310, 493
MboII GAAGA 7 cut(s) 80, 144, 218, 484, 707, 848, 858
MluCI AATT 8 cut(s) 148, 169, 219, 623, 699, 711, 731, 839
MlyI GAGTC 1 cut(s) 872
MmeI TCCRAC 1 cut(s) 676
MnlI CCTC 5 cut(s) 113, 223, 534, 657, 829
MroI TCCGGA 1 cut(s) 10
MseI TTAA 2 cut(s) 582, 702
MslI CAYNNNNRTG 1 cut(s) 108
MspI CCGG 3 cut(s) 11, 41, 725
MvnI CGCG 1 cut(s) 24
NdeII GATC 3 cut(s) 193, 310, 493
NlaIII CATG 4 cut(s) 92, 107, 802, 862
NlaIV GGNNCC 1 cut(s) 397
PfeI GAWTC 2 cut(s) 7, 284
PkrI GCNGC 1 cut(s) 538
PleI GAGTC 1 cut(s) 871
PpsI GAGTC 1 cut(s) 871
PspN4I GGNNCC 1 cut(s) 397
RsaI GTAC 1 cut(s) 555
RsaNI GTAC 1 cut(s) 554
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 2 cut(s) 582, 702
SatI GCNGC 1 cut(s) 537
Sau3AI GATC 3 cut(s) 193, 310, 493
SchI GAGTC 1 cut(s) 872
SfaNI GCATC 1 cut(s) 448
SfcI CTRYAG 1 cut(s) 642
SmiMI CAYNNNNRTG 1 cut(s) 108
Sse9I AATT 8 cut(s) 148, 169, 219, 623, 699, 711, 731, 839
SsiI CCGC 3 cut(s) 22, 137, 305
SspI AATATT 1 cut(s) 587
SspMI CTAG 2 cut(s) 288, 573
TaaI ACNGT 5 cut(s) 527, 553, 650, 680, 880
TaqI TCGA 1 cut(s) 772
TasI AATT 8 cut(s) 148, 169, 219, 623, 699, 711, 731, 839
TatI WGTACW 1 cut(s) 553
TfiI GAWTC 2 cut(s) 7, 284
Tru1I TTAA 2 cut(s) 582, 702
Tru9I TTAA 2 cut(s) 582, 702
TseI GCWGC 1 cut(s) 536
TspDTI ATGAA 2 cut(s) 105, 297
TspGWI ACGGA 1 cut(s) 175
XapI RAATTY 4 cut(s) 169, 219, 711, 839
XbaI TCTAGA 1 cut(s) 572
XmiI GTMKAC 1 cut(s) 548
XspI CTAG 2 cut(s) 288, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.