Rh3AG269100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001043
Physical Location & Seq
Forward (+)
30633388 .. 30634377
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG269100.1

Sequence Viewer

Length: 465 bp
ATGTCGGCGGCGCGCTGTAGAGCAGTCTCATCTAGGGTTGCTGTGTTGCTAAAGGCGCCTAGGGCTTTTGCTGCACCTAGGGTTCCTCTATCCCCTAGGGTTTCAACATGGCCTCTAGGAGAGCGGATGCCGGAAACAAGAGAGGTCACGACACCATTGGAGGTGGATGACAGCTTTGACCTACCCAATGCCAATGGAGTTACTCATATTTCTCCTACTAAGAAGAGGGGTCGTCCTAAGAGCAATAAGAACAAGTACACAACTAAGGGACCTAAGCCTTGGAGGACTAGGATTCCTATGCCTGGTCAGGAAGCTGAACCTGTTGATGAATTAGCTGAAGGAAATGCAGAAGCTGTTGGTACACTGGTAACTGTTGATATATCGGAGGCTAGTGCTATGGAGGAAGTGGCTGAAGGGGGTGACATTTTTCTTTTGGAAAATGCAGCCTCTTCAGCAAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.51

Weight (kDa)

6.62

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 124
AccII CGCG 1 cut(s) 13
AciI CCGC 2 cut(s) 8, 124
AcuI CTGAAG 3 cut(s) 357, 432, 435
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 2 cut(s) 257, 361
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 1 cut(s) 105
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 4 cut(s) 174, 314, 335, 353
AluI AGCT 4 cut(s) 174, 314, 335, 353
Alw26I GTCTC 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 353
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 71, 443
AspA2I CCTAGG 3 cut(s) 59, 77, 95
AspLEI GCGC 3 cut(s) 13, 15, 58
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 431
AvaII GGWCC 1 cut(s) 269
AvrII CCTAGG 3 cut(s) 59, 77, 95
BaeI ACNNNNGTAYC 2 cut(s) 351, 384
BanI GGYRCC 1 cut(s) 55
BbvI GCAGC 2 cut(s) 58, 455
BciT130I CCWGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 7 cut(s) 33, 60, 78, 96, 116, 288, 390
BfmI CTRYAG 1 cut(s) 16
BfoI RGCGCY 1 cut(s) 59
BisI GCNGC 3 cut(s) 9, 72, 444
BlnI CCTAGG 3 cut(s) 59, 77, 95
BlsI GCNGC 3 cut(s) 10, 73, 445
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 3 cut(s) 57, 84, 270
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 4 cut(s) 59, 77, 95, 278
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 4 cut(s) 59, 77, 95, 278
BseGI GGATG 2 cut(s) 132, 172
BseLI CCNNNNNNNGG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 369
BsePI GCGCGC 1 cut(s) 11
BseXI GCAGC 2 cut(s) 58, 455
BsgI GTGCAG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 13
BshFI GGCC 1 cut(s) 112
BshNI GGYRCC 1 cut(s) 55
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 302
BsmAI GTCTC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 1 cut(s) 112
BspACI CCGC 2 cut(s) 8, 124
BspANI GGCC 1 cut(s) 112
BspFNI CGCG 1 cut(s) 13
BspLI GGNNCC 3 cut(s) 57, 84, 270
BspT107I GGYRCC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 369
BssECI CCNNGG 4 cut(s) 59, 77, 95, 278
BssHII GCGCGC 1 cut(s) 11
BssNI GRCGYC 1 cut(s) 56
BssT1I CCWWGG 4 cut(s) 59, 77, 95, 278
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 2 cut(s) 218, 454
BstACI GRCGYC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 4 cut(s) 219, 237, 264, 273
BstF5I GGATG 2 cut(s) 132, 172
BstFNI CGCG 1 cut(s) 13
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 3 cut(s) 13, 15, 58
BstMAI GTCTC 1 cut(s) 31
BstMWI GCNNNNNNNGC 4 cut(s) 55, 62, 71, 452
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 16
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 2 cut(s) 58, 455
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 132, 172
BtsIMutI CAGTG 1 cut(s) 362
Cac8I GCNNGC 1 cut(s) 13
CaiI CAGNNNCTG 1 cut(s) 353
CfoI GCGC 3 cut(s) 13, 15, 58
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 256, 360
CviAII CATG 1 cut(s) 108
CviQI GTAC 2 cut(s) 256, 360
DdeI CTNAG 4 cut(s) 219, 237, 264, 273
DinI GGCGCC 1 cut(s) 57
Eam1104I CTCTTC 2 cut(s) 218, 454
EarI CTCTTC 2 cut(s) 218, 454
Eco130I CCWWGG 4 cut(s) 59, 77, 95, 278
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 3 cut(s) 357, 432, 435
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 4 cut(s) 59, 77, 95, 278
EgeI GGCGCC 1 cut(s) 57
EheI GGCGCC 1 cut(s) 57
ErhI CCWWGG 4 cut(s) 59, 77, 95, 278
FaeI CATG 1 cut(s) 111
FaiI YATR 5 cut(s) 109, 207, 299, 380, 398
FaqI GGGAC 1 cut(s) 282
FatI CATG 1 cut(s) 107
Fnu4HI GCNGC 3 cut(s) 9, 72, 444
FokI GGATG 2 cut(s) 139, 179
Fsp4HI GCNGC 3 cut(s) 9, 72, 444
FspBI CTAG 7 cut(s) 33, 60, 78, 96, 116, 288, 390
GlaI GCGC 3 cut(s) 12, 14, 57
GluI GCNGC 3 cut(s) 9, 72, 444
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 1 cut(s) 112
HapII CCGG 1 cut(s) 131
HhaI GCGC 3 cut(s) 13, 15, 58
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 1 cut(s) 111
Hin6I GCGC 3 cut(s) 11, 13, 56
HinP1I GCGC 3 cut(s) 11, 13, 56
HinfI GANTC 1 cut(s) 292
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 2 cut(s) 258, 362
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 2 cut(s) 148, 308
Hpy8I GTNNAC 2 cut(s) 258, 362
HpyAV CCTTC 2 cut(s) 332, 407
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4V TGCA 3 cut(s) 74, 347, 443
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 62, 71, 452
HpyF3I CTNAG 4 cut(s) 219, 237, 264, 273
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 1 cut(s) 111
HspAI GCGC 3 cut(s) 11, 13, 56
KasI GGCGCC 1 cut(s) 55
LpnPI CCDG 6 cut(s) 144, 288, 293, 315, 333, 350
Lsp1109I GCAGC 2 cut(s) 58, 455
LweI GCATC 1 cut(s) 117
MaeI CTAG 7 cut(s) 33, 60, 78, 96, 116, 288, 390
MaeIII GTNAC 4 cut(s) 145, 199, 367, 419
MbiI CCGCTC 1 cut(s) 124
MboII GAAGA 2 cut(s) 235, 441
MluCI AATT 1 cut(s) 329
Mly113I GGCGCC 1 cut(s) 56
MnlI CCTC 9 cut(s) 96, 123, 136, 154, 219, 276, 379, 394, 457
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 303
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 4 cut(s) 55, 62, 71, 452
NarI GGCGCC 1 cut(s) 56
NlaIII CATG 1 cut(s) 111
NlaIV GGNNCC 3 cut(s) 57, 84, 270
NmuCI GTSAC 2 cut(s) 145, 419
PauI GCGCGC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 3 cut(s) 10, 73, 445
PluTI GGCGCC 1 cut(s) 59
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 3 cut(s) 57, 84, 270
PspPI GGNCC 1 cut(s) 269
PspPPI RGGWCCY 1 cut(s) 269
PstNI CAGNNNCTG 1 cut(s) 353
PteI GCGCGC 1 cut(s) 11
RsaI GTAC 2 cut(s) 257, 361
RsaNI GTAC 2 cut(s) 256, 360
SatI GCNGC 3 cut(s) 9, 72, 444
Sau96I GGNCC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 303
SfaNI GCATC 1 cut(s) 117
SfcI CTRYAG 1 cut(s) 16
SfoI GGCGCC 1 cut(s) 57
SinI GGWCC 1 cut(s) 269
Sse9I AATT 1 cut(s) 329
SsiI CCGC 2 cut(s) 8, 124
SspDI GGCGCC 1 cut(s) 55
SspMI CTAG 7 cut(s) 33, 60, 78, 96, 116, 288, 390
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 4 cut(s) 59, 77, 95, 278
TaaI ACNGT 1 cut(s) 373
TasI AATT 1 cut(s) 329
TatI WGTACW 1 cut(s) 255
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 292
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 2 cut(s) 145, 419
TseI GCWGC 2 cut(s) 71, 443
Tsp45I GTSAC 2 cut(s) 145, 419
TspDTI ATGAA 1 cut(s) 342
TspRI CASTG 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 269
XmaJI CCTAGG 3 cut(s) 59, 77, 95
XspI CTAG 7 cut(s) 33, 60, 78, 96, 116, 288, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.