Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001043

Physical Location & Seq

Genomic Coordinates Forward (+)

32152379 .. 32154389

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00108180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAGTGTCGTTATAGCAACGACATGGAGGAAATCAAGATGATGATTCAACAACTTGCAGAACGTATCAATCGCATCGAAACTCGACGCATAGGAGGTAAGAGTTACGGCGGGGAGAGAGACGTTTATCGCGTGTCACTTGCATCGAAACCTCTTGCCAAGATGGTGTGGGTTTTGACGGGGAGGGAGACATTGGCCCATTTCATCACCGTGCTCGTTGTGCACAAGACACCGGTCATGCTCCGAGTACATAAGCTTCAGGATACATGGACCTCCTGGGAGCCAGCGGGTACTATGATCGGCGGGTACATGAGCCATCGGGTACTTGCACATCCCCGTACCCTCAACCCCACTCCCAAGCCTTACCCTTCTCCGGGACTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.65

Weight (kDa)

9.86

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07634
prunus_persica	Prupe.1G102800_v2.0.a1 Prupe.8G086900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0246931
rosa_laevigata	RLG00000003129 RLG00000005865 RLG00000005867 RLG00000008042 RLG00000017998 RLG00000019187 RLG00000019483 RLG00000022446 RLG00000023139 RLG00000032380 RLG00000034989 RLG00000037076
rosa_multiflora	Rmu_co8397459.1_g000001 Rmu_sc0000195.1_g000037 Rmu_sc0000516.1_g000018 Rmu_sc0001091.1_g000004 Rmu_sc0001113.1_g000012 Rmu_sc0001673.1_g000033 Rmu_sc0001694.1_g000016 Rmu_sc0001793.1_g000051 Rmu_sc0002676.1_g000007 Rmu_sc0002986.1_g000020 Rmu_sc0004253.1_g000001 Rmu_sc0004478.1_g000012 Rmu_sc0004614.1_g000007 Rmu_sc0005387.1_g000002 Rmu_sc0006592.1_g000013 Rmu_sc0006967.1_g000011 Rmu_sc0011039.1_g000002 Rmu_sc0016880.1_g000004 Rmu_ssc0000182.1_g000020
rosa_roxburghii	Rroxscaffold_1G00024880 Rroxscaffold_1G00053230 Rroxscaffold_1G00068810 Rroxscaffold_1G00068820 Rroxscaffold_2G00094300 Rroxscaffold_2G00095320 Rroxscaffold_2G00095330 Rroxscaffold_2G00108180 Rroxscaffold_2G00130520 Rroxscaffold_2G00131280 Rroxscaffold_3G00229800 Rroxscaffold_4G00279060 Rroxscaffold_4G00312500 Rroxscaffold_4G00312510 Rroxscaffold_7G00215840
rosa_samantha	Rh1BG408300 Rh3AG269100 Rh3CG198400 Rh3CG303300 Rh5AG056400 Rh5DG052900 Rh5DG388100 Rh7BG462700 Rh7CG506000
rosa_wichuraiana	Rw1G013080 Rw2G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AciI	CCGC	3 cut(s)	111, 287, 303
AcuI	CTGAAG	1 cut(s)	242
AfaI	GTAC	5 cut(s)	249, 292, 308, 324, 340
AfiI	CCNNNNNNNGG	2 cut(s)	373, 374
AgeI	ACCGGT	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw21I	GWGCWC	2 cut(s)	216, 225
Alw26I	GTCTC	2 cut(s)	114, 182
Alw44I	GTGCAC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	195
ApaLI	GTGCAC	1 cut(s)	221
AsiGI	ACCGGT	1 cut(s)	232
AspS9I	GGNCC	2 cut(s)	196, 270
AsuC2I	CCSGG	1 cut(s)	375
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	270
BaeGI	GKGCMC	1 cut(s)	225
BarI	GAAGNNNNNNTAC	2 cut(s)	240, 272
Bbv12I	GWGCWC	2 cut(s)	216, 225
BccI	CCATC	2 cut(s)	157, 324
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	277
BciVI	GTATCC	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	114, 182
BfuI	GTATCC	1 cut(s)	256
Bme1390I	CCNGG	2 cut(s)	277, 375
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	2 cut(s)	196, 270
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	277, 375
BmsI	GCATC	2 cut(s)	84, 152
BoxI	GACNNNNGTC	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 374
Bse118I	RCCGGY	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	2 cut(s)	373, 374
BseSI	GKGCMC	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	197
BshTI	ACCGGT	1 cut(s)	232
BsiHKAI	GWGCWC	2 cut(s)	216, 225
BsiSI	CCGG	2 cut(s)	233, 374
BslI	CCNNNNNNNGG	2 cut(s)	373, 374
BsmAI	GTCTC	2 cut(s)	114, 182
BsmBI	CGTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	216, 225
Bsp143I	GATC	1 cut(s)	297
BspACI	CCGC	3 cut(s)	111, 287, 303
BspANI	GGCC	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	383
BspLI	GGNNCC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	331
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	300
BstMAI	GTCTC	2 cut(s)	114, 182
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstNI	CCWGG	1 cut(s)	277
BstPAI	GACNNNNGTC	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	275, 373
BstSLI	GKGCMC	1 cut(s)	225
BstUI	CGCG	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	285
CciI	TCATGA	1 cut(s)	383
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	196, 270
CseI	GACGC	1 cut(s)	96
Csp6I	GTAC	5 cut(s)	248, 291, 307, 323, 339
CspAI	ACCGGT	1 cut(s)	232
CviAII	CATG	5 cut(s)	25, 238, 267, 310, 384
CviJI	RGCY	5 cut(s)	197, 256, 283, 315, 361
CviKI_1	RGCY	5 cut(s)	197, 256, 283, 315, 361
CviQI	GTAC	5 cut(s)	248, 291, 307, 323, 339
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	5 cut(s)	28, 241, 270, 313, 387
FaiI	YATR	9 cut(s)	15, 26, 92, 239, 252, 268, 296, 311, 385
FatI	CATG	5 cut(s)	24, 237, 266, 309, 383
FauI	CCCGC	3 cut(s)	104, 280, 296
FokI	GGATG	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	2 cut(s)	233, 374
HgaI	GACGC	1 cut(s)	96
Hin1II	CATG	5 cut(s)	28, 241, 270, 313, 387
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	46, 378
HpaII	CCGG	2 cut(s)	233, 374
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	3 cut(s)	37, 260, 384
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	378
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	2 cut(s)	64, 123
HpyCH4V	TGCA	4 cut(s)	59, 143, 223, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpySE526I	ACGT	2 cut(s)	64, 123
Hsp92II	CATG	5 cut(s)	28, 241, 270, 313, 387
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	246, 280
LpnPI	CCDG	5 cut(s)	245, 246, 262, 289, 297
LweI	GCATC	2 cut(s)	84, 152
MaeII	ACGT	2 cut(s)	64, 123
MaeIII	GTNAC	2 cut(s)	104, 135
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	216, 225
MlyI	GAGTC	1 cut(s)	372
MnlI	CCTC	6 cut(s)	22, 89, 162, 177, 283, 353
MslI	CAYNNNNRTG	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	2 cut(s)	233, 374
MspR9I	CCNGG	2 cut(s)	277, 375
MvaI	CCWGG	1 cut(s)	277
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	220
NciI	CCSGG	1 cut(s)	375
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	5 cut(s)	28, 241, 270, 313, 387
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	135
PagI	TCATGA	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	46
PfoI	TCCNGGA	1 cut(s)	373
PinAI	ACCGGT	1 cut(s)	232
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PshAI	GACNNNNGTC	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	2 cut(s)	196, 270
RsaI	GTAC	5 cut(s)	249, 292, 308, 324, 340
RsaNI	GTAC	5 cut(s)	248, 291, 307, 323, 339
RseI	CAYNNNNRTG	1 cut(s)	209
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	2 cut(s)	196, 270
SchI	GAGTC	1 cut(s)	372
ScrFI	CCNGG	2 cut(s)	277, 375
SduI	GDGCHC	2 cut(s)	216, 225
SetI	ASST	6 cut(s)	67, 100, 126, 154, 258, 275
SfaNI	GCATC	2 cut(s)	84, 152
SinI	GGWCC	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	209
SsiI	CCGC	3 cut(s)	111, 287, 303
StyD4I	CCNGG	2 cut(s)	275, 373
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	2 cut(s)	67, 126
TaqI	TCGA	3 cut(s)	78, 85, 146
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	193
VneI	GTGCAC	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.