Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001043

Physical Location & Seq

Genomic Coordinates Forward (+)

58676197 .. 58678504

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034989

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCAGATTGACATGCCATTGGAGGTGGATGATGGCTTTGATTTACCAAATGAGAATGGGGTGATTCGCATCTCTCCAATAAAGAAGAGAGAGAGACTGAAAGGATGCAAGAACAAATACAAGACCAAGGGGCCTAAACCTAGGAGGACTAGGTTTCCCAAGGTAATTGGGGAAGCTGTGATTAATGAAGAGATCGCTATTGTTGAGCTTGCAAATGAAACTGTAGGTGGTTCTGAAGCTAGCGACCTTATAAATTCGAAACCAAGGGTTTCAAGTGGCGGCAATCGTGGTGTCCCAAGGGAGAGGAAGAGGCGACGAGTAAGGCGGCGGCGCAGAGCTTTTGATCGTGGGATGCGGAATTGTTTGGAGGTTGAAAGTAATATTAATGAACATGGTACCAATGTTATTGATAAAGAGTTTGAGCTATCAGTAGAAAATATTACTATGCCCATGCTAGGAATTGATCCAACTATCCAAATCGTTGAAGCTACTGTACCTGCAATTGAAGTGGAAGACCTTTACCCATGTATGAGTATTTACAAACTGGATACGGGTGAGATGATTGGTGATATAAACTCAAACCATGGTTATATTGGTGATGCCGGCCAACGTGGGTTTCAATCTTGGACTTCCAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

24.01

Weight (kDa)

8.74

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07634
prunus_persica	Prupe.1G102800_v2.0.a1 Prupe.8G086900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0246931
rosa_laevigata	RLG00000003129 RLG00000005865 RLG00000005867 RLG00000008042 RLG00000017998 RLG00000019187 RLG00000019483 RLG00000022446 RLG00000023139 RLG00000032380 RLG00000034989 RLG00000037076
rosa_multiflora	Rmu_co8397459.1_g000001 Rmu_sc0000195.1_g000037 Rmu_sc0000516.1_g000018 Rmu_sc0001091.1_g000004 Rmu_sc0001113.1_g000012 Rmu_sc0001673.1_g000033 Rmu_sc0001694.1_g000016 Rmu_sc0001793.1_g000051 Rmu_sc0002676.1_g000007 Rmu_sc0002986.1_g000020 Rmu_sc0004253.1_g000001 Rmu_sc0004478.1_g000012 Rmu_sc0004614.1_g000007 Rmu_sc0005387.1_g000002 Rmu_sc0006592.1_g000013 Rmu_sc0006967.1_g000011 Rmu_sc0011039.1_g000002 Rmu_sc0016880.1_g000004 Rmu_ssc0000182.1_g000020
rosa_roxburghii	Rroxscaffold_1G00024880 Rroxscaffold_1G00053230 Rroxscaffold_1G00068810 Rroxscaffold_1G00068820 Rroxscaffold_2G00094300 Rroxscaffold_2G00095320 Rroxscaffold_2G00095330 Rroxscaffold_2G00108180 Rroxscaffold_2G00130520 Rroxscaffold_2G00131280 Rroxscaffold_3G00229800 Rroxscaffold_4G00279060 Rroxscaffold_4G00312500 Rroxscaffold_4G00312510 Rroxscaffold_7G00215840
rosa_samantha	Rh1BG408300 Rh3AG269100 Rh3CG198400 Rh3CG303300 Rh5AG056400 Rh5DG052900 Rh5DG388100 Rh7BG462700 Rh7CG506000
rosa_wichuraiana	Rw1G013080 Rw2G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
Acc36I	ACCTGC	1 cut(s)	505
Acc65I	GGTACC	1 cut(s)	395
AccB1I	GGYRCC	1 cut(s)	395
AciI	CCGC	4 cut(s)	279, 325, 328, 355
AclWI	GGATC	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	397, 495
AfiI	CCNNNNNNNGG	1 cut(s)	455
AgsI	TTSAA	5 cut(s)	273, 374, 485, 506, 620
AjuI	GAANNNNNNNTTGG	2 cut(s)	600, 632
AluBI	AGCT	6 cut(s)	176, 208, 239, 338, 424, 488
AluI	AGCT	6 cut(s)	176, 208, 239, 338, 424, 488
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	458
AoxI	GGCC	2 cut(s)	131, 604
ApoI	RAATTY	1 cut(s)	253
AseI	ATTAAT	2 cut(s)	183, 384
Asp718I	GGTACC	1 cut(s)	395
AspA2I	CCTAGG	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	4 cut(s)	73, 566, 578, 608
AsuII	TTCGAA	1 cut(s)	257
AsuNHI	GCTAGC	1 cut(s)	239
AvrII	CCTAGG	1 cut(s)	140
BaeI	ACNNNNGTAYC	2 cut(s)	387, 420
BanI	GGYRCC	1 cut(s)	395
BarI	GAAGNNNNNNTAC	2 cut(s)	477, 509
BbsI	GAAGAC	1 cut(s)	519
BccI	CCATC	1 cut(s)	26
BciVI	GTATCC	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	5 cut(s)	141, 150, 240, 455, 640
BfmI	CTRYAG	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	505
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	3 cut(s)	280, 326, 329
BlnI	CCTAGG	1 cut(s)	140
BlsI	GCNGC	3 cut(s)	281, 327, 330
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	132, 397
BmsI	GCATC	4 cut(s)	78, 95, 342, 589
BmtI	GCTAGC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	519
Bpu14I	TTCGAA	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	68
BsaJI	CCNNGG	6 cut(s)	126, 140, 159, 263, 296, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse118I	RCCGGY	1 cut(s)	602
Bse1I	ACTGG	1 cut(s)	549
Bse8I	GATNNNNATC	1 cut(s)	68
BseDI	CCNNGG	6 cut(s)	126, 140, 159, 263, 296, 583
BseGI	GGATG	3 cut(s)	34, 110, 357
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseNI	ACTGG	1 cut(s)	549
BshFI	GGCC	2 cut(s)	133, 606
BshNI	GGYRCC	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	603
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	133, 606
Bsp119I	TTCGAA	1 cut(s)	257
Bsp143I	GATC	3 cut(s)	192, 343, 463
Bsp19I	CCATGG	1 cut(s)	583
BspACI	CCGC	4 cut(s)	279, 325, 328, 355
BspANI	GGCC	2 cut(s)	133, 606
BspLI	GGNNCC	2 cut(s)	132, 397
BspMI	ACCTGC	1 cut(s)	505
BspOI	GCTAGC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	458
BspT104I	TTCGAA	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	602
BsrI	ACTGG	1 cut(s)	549
BssAI	RCCGGY	1 cut(s)	602
BssECI	CCNNGG	6 cut(s)	126, 140, 159, 263, 296, 583
BssMI	GATC	3 cut(s)	192, 343, 463
BssT1I	CCWWGG	6 cut(s)	126, 140, 159, 263, 296, 583
Bst4CI	ACNGT	2 cut(s)	223, 493
Bst6I	CTCTTC	3 cut(s)	80, 183, 302
BstBI	TTCGAA	1 cut(s)	257
BstC8I	GCNNGC	3 cut(s)	210, 241, 604
BstDSI	CCRYGG	1 cut(s)	583
BstF5I	GGATG	3 cut(s)	34, 110, 357
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	3 cut(s)	195, 346, 466
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	192, 343, 463
BstNSI	RCATGY	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	222
BstV2I	GAAGAC	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	2 cut(s)	133, 606
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	3 cut(s)	34, 110, 357
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	3 cut(s)	210, 241, 604
CfoI	GCGC	1 cut(s)	333
Cfr10I	RCCGGY	1 cut(s)	602
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	396, 494
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	5 cut(s)	13, 392, 451, 525, 584
CviJI	RGCY	9 cut(s)	36, 133, 176, 208, 239, 338, 424, 488, 606
CviKI_1	RGCY	9 cut(s)	36, 133, 176, 208, 239, 338, 424, 488, 606
CviQI	GTAC	2 cut(s)	396, 494
DpnI	GATC	3 cut(s)	194, 345, 465
DpnII	GATC	3 cut(s)	192, 343, 463
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	3 cut(s)	80, 183, 302
EarI	CTCTTC	3 cut(s)	80, 183, 302
Eco130I	CCWWGG	6 cut(s)	126, 140, 159, 263, 296, 583
Eco57I	CTGAAG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	131
EcoT14I	CCWWGG	6 cut(s)	126, 140, 159, 263, 296, 583
ErhI	CCWWGG	6 cut(s)	126, 140, 159, 263, 296, 583
FaeI	CATG	5 cut(s)	16, 395, 454, 528, 587
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	5 cut(s)	12, 391, 450, 524, 583
Fnu4HI	GCNGC	3 cut(s)	280, 326, 329
FokI	GGATG	3 cut(s)	41, 117, 364
Fsp4HI	GCNGC	3 cut(s)	280, 326, 329
FspBI	CTAG	5 cut(s)	141, 150, 240, 455, 640
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	3 cut(s)	280, 326, 329
HaeIII	GGCC	2 cut(s)	133, 606
HapII	CCGG	1 cut(s)	603
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	5 cut(s)	16, 395, 454, 528, 587
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HinfI	GANTC	1 cut(s)	64
HpaII	CCGG	1 cut(s)	603
HphI	GGTGA	4 cut(s)	73, 566, 578, 608
Hpy188I	TCNGA	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	318
HpyCH4III	ACNGT	2 cut(s)	223, 493
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	4 cut(s)	4, 108, 212, 500
HpySE526I	ACGT	1 cut(s)	610
Hsp92II	CATG	5 cut(s)	16, 395, 454, 528, 587
HspAI	GCGC	1 cut(s)	331
KpnI	GGTACC	1 cut(s)	399
KroI	GCCGGC	1 cut(s)	602
KroNI	GCCGGC	1 cut(s)	604
Kzo9I	GATC	3 cut(s)	192, 343, 463
LpnPI	CCDG	3 cut(s)	510, 530, 616
LweI	GCATC	4 cut(s)	78, 95, 342, 589
MaeI	CTAG	5 cut(s)	141, 150, 240, 455, 640
MaeII	ACGT	1 cut(s)	610
MalI	GATC	3 cut(s)	194, 345, 465
MboI	GATC	3 cut(s)	192, 343, 463
MboII	GAAGA	4 cut(s)	97, 200, 319, 524
MfeI	CAATTG	1 cut(s)	501
MluCI	AATT	5 cut(s)	165, 253, 358, 459, 501
MmeI	TCCRAC	1 cut(s)	491
MnlI	CCTC	5 cut(s)	16, 138, 297, 303, 361
MroNI	GCCGGC	1 cut(s)	602
MseI	TTAA	2 cut(s)	183, 384
MspI	CCGG	1 cut(s)	603
MunI	CAATTG	1 cut(s)	501
NaeI	GCCGGC	1 cut(s)	604
NcoI	CCATGG	1 cut(s)	583
NdeII	GATC	3 cut(s)	192, 343, 463
NgoMIV	GCCGGC	1 cut(s)	602
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	5 cut(s)	16, 395, 454, 528, 587
NlaIV	GGNNCC	2 cut(s)	132, 397
NspI	RCATGY	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	257
PdiI	GCCGGC	1 cut(s)	604
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	3 cut(s)	281, 327, 330
PshBI	ATTAAT	2 cut(s)	183, 384
PsiI	TTATAA	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	132, 397
PspPI	GGNCC	1 cut(s)	131
RsaI	GTAC	2 cut(s)	397, 495
RsaNI	GTAC	2 cut(s)	396, 494
SaqAI	TTAA	2 cut(s)	183, 384
SatI	GCNGC	3 cut(s)	280, 326, 329
Sau3AI	GATC	3 cut(s)	192, 343, 463
Sau96I	GGNCC	1 cut(s)	131
SfaNI	GCATC	4 cut(s)	78, 95, 342, 589
SfcI	CTRYAG	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	257
Sse9I	AATT	5 cut(s)	165, 253, 358, 459, 501
SsiI	CCGC	4 cut(s)	279, 325, 328, 355
SspI	AATATT	2 cut(s)	382, 439
SspMI	CTAG	5 cut(s)	141, 150, 240, 455, 640
StyI	CCWWGG	6 cut(s)	126, 140, 159, 263, 296, 583
TaaI	ACNGT	2 cut(s)	223, 493
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	1 cut(s)	257
TasI	AATT	5 cut(s)	165, 253, 358, 459, 501
TauI	GCSGC	3 cut(s)	282, 328, 331
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	183, 384
Tru9I	TTAA	2 cut(s)	183, 384
TspDTI	ATGAA	3 cut(s)	201, 231, 402
VspI	ATTAAT	2 cut(s)	183, 384
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	590
XmaJI	CCTAGG	1 cut(s)	140
XspI	CTAG	5 cut(s)	141, 150, 240, 455, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.