RLG00000037076

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001043
Physical Location & Seq
Reverse (-)
88091536 .. 88092439
904 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037076

Sequence Viewer

Length: 651 bp
ATGGTGGTGTTGGGCGAGTACAATAGGCTCGGGGACATGGCCGGTGTGCCCTTGCACGCGCTAGAGACATGGGTGGTGTTGCGATGGTTACCACCGCGTCTGAGGACGGAGGAATCCTTGATTCTGCTAGGATCCCCAATAGAGATGCTTAACAACATTTCCGAGTGGAGGTGGACTACGGCAAAGGTTGTGGACAACCAGATCTTTTCGGTTCACGTCGAAGATGACGACAAAAGTAGACCTGCCCTACAAGAAGATCAAGGGATTGTGCAGTGCTTGTGGTCTGTTTTTTCATGGAGCAGAGGGATGCAATCAGTTTTTGGTCAAGCAGGGGCCAAGGCGACGGCGATCCCGAGATGGGAAAAGGTGGTGGCAGCTCCTCCGCTGGTGGTGGTGGCTGAGAGTGATCTAGTACCACAAATACTTGGAGTATGGTGTGAGGCACCAATGTCCCTTATTAGACTAAGTAAGCGGTGCAAATTGGCTATAGTTCAGGTTGGGACTCGACTAGATATGGAGGTACTTTTTGATCTTCCAAATAATAATGGAGTGGTTCATATTTCTGCTAAGAAGAAAAGAGGAAGTCCGAAGGAGAGTAAGAAGGAGGTTAGGACTGCTAAGGGTCTAAGACTAGAAAAGATGACGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.24

Weight (kDa)

9.03

Isoelectric Point (pI)

55.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
AccB1I GGYRCC 1 cut(s) 442
AccI GTMKAC 1 cut(s) 238
AccII CGCG 2 cut(s) 59, 97
AciI CCGC 3 cut(s) 95, 383, 472
AclWI GGATC 3 cut(s) 126, 139, 343
AcoI YGGCCR 1 cut(s) 39
AfaI GTAC 3 cut(s) 20, 414, 522
AfiI CCNNNNNNNGG 2 cut(s) 168, 358
AjiI CACGTC 1 cut(s) 217
AluBI AGCT 1 cut(s) 377
AluI AGCT 1 cut(s) 377
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 3 cut(s) 126, 139, 343
Ama87I CYCGRG 2 cut(s) 29, 352
AoxI GGCC 2 cut(s) 39, 333
ApeKI GCWGC 1 cut(s) 374
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 333
AvaI CYCGRG 2 cut(s) 29, 352
BaeGI GKGCMC 1 cut(s) 51
BamHI GGATCC 1 cut(s) 131
BanI GGYRCC 1 cut(s) 442
BbvI GCAGC 1 cut(s) 386
BccI CCATC 2 cut(s) 78, 351
BceAI ACGGC 2 cut(s) 195, 360
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 5 cut(s) 62, 128, 410, 509, 632
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 250
BglII AGATCT 1 cut(s) 201
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
BmeT110I CYCGRG 2 cut(s) 29, 352
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 333
BmiI GGNNCC 3 cut(s) 133, 334, 444
BmsI GCATC 2 cut(s) 135, 297
Bpu10I CCTNAGC 1 cut(s) 618
BsaJI CCNNGG 1 cut(s) 336
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 358
Bse118I RCCGGY 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 168, 358
BseMII CTCAG 2 cut(s) 92, 390
BseRI GAGGAG 1 cut(s) 369
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 1 cut(s) 386
BsgI GTGCAG 1 cut(s) 290
Bsh1236I CGCG 2 cut(s) 59, 97
BshFI GGCC 2 cut(s) 41, 335
BshNI GGYRCC 1 cut(s) 442
BsiHKCI CYCGRG 2 cut(s) 29, 352
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 3 cut(s) 47, 436, 514
BslI CCNNNNNNNGG 2 cut(s) 168, 358
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 3 cut(s) 47, 436, 514
BsnI GGCC 2 cut(s) 41, 335
BsoBI CYCGRG 2 cut(s) 29, 352
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 6 cut(s) 131, 201, 256, 348, 406, 529
BspACI CCGC 3 cut(s) 95, 383, 472
BspANI GGCC 2 cut(s) 41, 335
BspCNI CTCAG 2 cut(s) 93, 391
BspFNI CGCG 2 cut(s) 59, 97
BspLI GGNNCC 3 cut(s) 133, 334, 444
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 3 cut(s) 126, 139, 343
BspT107I GGYRCC 1 cut(s) 442
BsrFI RCCGGY 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 6 cut(s) 131, 201, 256, 348, 406, 529
BssT1I CCWWGG 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 6 cut(s) 101, 399, 464, 567, 618, 626
BstEII GGTNACC 1 cut(s) 87
BstF5I GGATG 1 cut(s) 312
BstFNI CGCG 2 cut(s) 59, 97
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 6 cut(s) 134, 204, 259, 351, 409, 532
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 6 cut(s) 131, 201, 256, 348, 406, 529
BstPI GGTNACC 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 486
BstSLI GKGCMC 1 cut(s) 51
BstUI CGCG 2 cut(s) 59, 97
BstV1I GCAGC 1 cut(s) 386
BstX2I RGATCY 2 cut(s) 131, 201
BstYI RGATCY 2 cut(s) 131, 201
BsuRI GGCC 2 cut(s) 41, 335
BtgZI GCGATG 1 cut(s) 97
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 312
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 278
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 57
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 333
CseI GACGC 1 cut(s) 86
Csp6I GTAC 3 cut(s) 19, 413, 521
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 3 cut(s) 37, 69, 294
CviJI RGCY 6 cut(s) 28, 41, 335, 377, 398, 485
CviKI_1 RGCY 6 cut(s) 28, 41, 335, 377, 398, 485
CviQI GTAC 3 cut(s) 19, 413, 521
DdeI CTNAG 6 cut(s) 101, 399, 464, 567, 618, 626
DpnI GATC 6 cut(s) 133, 203, 258, 350, 408, 531
DpnII GATC 6 cut(s) 131, 201, 256, 348, 406, 529
EaeI YGGCCR 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 336
Eco88I CYCGRG 2 cut(s) 29, 352
Eco91I GGTNACC 1 cut(s) 87
EcoO65I GGTNACC 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 3 cut(s) 40, 72, 297
FaiI YATR 7 cut(s) 38, 70, 295, 433, 488, 515, 558
FaqI GGGAC 3 cut(s) 47, 436, 514
FatI CATG 3 cut(s) 36, 68, 293
FblI GTMKAC 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 1 cut(s) 319
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 5 cut(s) 62, 128, 410, 509, 632
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 375
HaeIII GGCC 2 cut(s) 41, 335
HapII CCGG 1 cut(s) 42
HgaI GACGC 1 cut(s) 86
HhaI GCGC 1 cut(s) 61
Hin1II CATG 3 cut(s) 40, 72, 297
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 3 cut(s) 113, 121, 502
HpaII CCGG 1 cut(s) 42
Hpy166II GTNNAC 4 cut(s) 174, 193, 214, 239
Hpy188I TCNGA 4 cut(s) 102, 163, 588, 650
Hpy188III TCNNGA 1 cut(s) 352
Hpy8I GTNNAC 4 cut(s) 174, 193, 214, 239
Hpy99I CGWCG 2 cut(s) 221, 346
HpyAV CCTTC 2 cut(s) 583, 595
HpyCH4IV ACGT 2 cut(s) 216, 644
HpyCH4V TGCA 4 cut(s) 55, 271, 310, 477
HpyF3I CTNAG 6 cut(s) 101, 399, 464, 567, 618, 626
HpySE526I ACGT 2 cut(s) 216, 644
Hsp92II CATG 3 cut(s) 40, 72, 297
HspAI GCGC 1 cut(s) 59
Kzo9I GATC 6 cut(s) 131, 201, 256, 348, 406, 529
LmnI GCTCC 2 cut(s) 297, 382
LpnPI CCDG 6 cut(s) 55, 212, 255, 315, 371, 479
Lsp1109I GCAGC 1 cut(s) 386
LweI GCATC 2 cut(s) 135, 297
MaeI CTAG 5 cut(s) 62, 128, 410, 509, 632
MaeII ACGT 2 cut(s) 216, 644
MaeIII GTNAC 1 cut(s) 87
MalI GATC 6 cut(s) 133, 203, 258, 350, 408, 531
MboI GATC 6 cut(s) 131, 201, 256, 348, 406, 529
MboII GAAGA 4 cut(s) 233, 266, 524, 583
MflI RGATCY 2 cut(s) 131, 201
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 1 cut(s) 479
MlyI GAGTC 1 cut(s) 496
MnlI CCTC 9 cut(s) 96, 103, 162, 296, 390, 433, 511, 572, 598
MseI TTAA 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 385
MspI CCGG 1 cut(s) 42
MvnI CGCG 2 cut(s) 59, 97
NdeII GATC 6 cut(s) 131, 201, 256, 348, 406, 529
NlaIII CATG 3 cut(s) 40, 72, 297
NlaIV GGNNCC 3 cut(s) 133, 334, 444
PcsI WCGNNNNNNNCGW 2 cut(s) 225, 350
PfeI GAWTC 2 cut(s) 113, 121
PkrI GCNGC 1 cut(s) 376
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
PspEI GGTNACC 1 cut(s) 87
PspN4I GGNNCC 3 cut(s) 133, 334, 444
PspPI GGNCC 1 cut(s) 333
PsuI RGATCY 2 cut(s) 131, 201
RsaI GTAC 3 cut(s) 20, 414, 522
RsaNI GTAC 3 cut(s) 19, 413, 521
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 6 cut(s) 131, 201, 256, 348, 406, 529
Sau96I GGNCC 1 cut(s) 333
SchI GAGTC 1 cut(s) 496
SduI GDGCHC 1 cut(s) 51
SfaNI GCATC 2 cut(s) 135, 297
SfcI CTRYAG 1 cut(s) 486
Sse9I AATT 1 cut(s) 479
SsiI CCGC 3 cut(s) 95, 383, 472
SspMI CTAG 5 cut(s) 62, 128, 410, 509, 632
StyI CCWWGG 1 cut(s) 336
TaiI ACGT 2 cut(s) 219, 647
TaqI TCGA 2 cut(s) 219, 505
TasI AATT 1 cut(s) 479
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 2 cut(s) 113, 121
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 278
TseI GCWGC 1 cut(s) 374
TspDTI ATGAA 2 cut(s) 282, 545
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 238
XspI CTAG 5 cut(s) 62, 128, 410, 509, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.