Rmu_sc0016880.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016880.1
OG0001043
Physical Location & Seq
Reverse (-)
45650 .. 46304
655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016880.1_g000004.1.cds

Sequence Viewer

Length: 534 bp
atggctcgaagcaagcttgatcggggaggttttcgaatggagggtcattataacaatgacatggaggaaatcaagatgatgatccaacaacttgcagaacatattaatcgcatcgaaactcgacgccaaggaggtaagagttgcgatgggaaaagagacgtttatcaacatgtcacttgcactgaagcctcatgccaagatggtgaagttttagacagggagtgttggcccttttcatcactgtgctccgttgttttgccaccaatctatgattgtttttgtgaagcttgttgtgacaattttgatgatcaaatttgtgatgggaattgtttggaggttgaaagcaatattgatgaacatggtagcaatgttattgataggcacgagcaggattcaatcttggatgagagtaatgcaagtgtggattttggaggaaatgcctacaaaatgaaagttaacagatccgttgatattgttaggtttaatgttttcaattttcaaattcccaagatattagttgatatggtcaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.22

Weight (kDa)

4.64

Isoelectric Point (pI)

60.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
AclWI GGATC 2 cut(s) 76, 456
AcsI RAATTY 2 cut(s) 312, 501
AcuI CTGAAG 1 cut(s) 204
AcyI GRCGYC 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 4 cut(s) 341, 396, 493, 500
AluBI AGCT 2 cut(s) 16, 287
AluI AGCT 2 cut(s) 16, 287
Alw21I GWGCWC 1 cut(s) 248
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 2 cut(s) 76, 456
AoxI GGCC 1 cut(s) 227
ApoI RAATTY 2 cut(s) 312, 501
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AseI ATTAAT 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 215
AsuII TTCGAA 1 cut(s) 34
BauI CACGAG 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 248
BccI CCATC 3 cut(s) 140, 194, 314
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 228
BmsI GCATC 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 34
BsaBI GATNNNNATC 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 373
Bse8I GATNNNNATC 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 409
BseJI GATNNNNATC 1 cut(s) 80
BseMI GCAATG 1 cut(s) 373
BshFI GGCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 150
BsmBI CGTCTC 1 cut(s) 150
BsnI GGCC 1 cut(s) 229
Bsp119I TTCGAA 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 4 cut(s) 19, 81, 307, 461
BspANI GGCC 1 cut(s) 229
BspPI GGATC 2 cut(s) 76, 456
BspT104I TTCGAA 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 4 cut(s) 19, 81, 307, 461
BssNI GRCGYC 1 cut(s) 124
BssSI CACGAG 1 cut(s) 383
BssT1I CCWWGG 1 cut(s) 127
Bst2BI CACGAG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 243
BstACI GRCGYC 1 cut(s) 124
BstBI TTCGAA 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 14
BstF5I GGATG 1 cut(s) 409
BstKTI GATC 4 cut(s) 22, 84, 310, 464
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 4 cut(s) 19, 81, 307, 461
BstNSI RCATGY 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BsuRI GGCC 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 409
BtsIMutI CAGTG 2 cut(s) 180, 239
Cac8I GCNNGC 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 228
CseI GACGC 1 cut(s) 132
CviAII CATG 4 cut(s) 61, 170, 192, 359
CviJI RGCY 5 cut(s) 5, 16, 188, 229, 287
CviKI_1 RGCY 5 cut(s) 5, 16, 188, 229, 287
DpnI GATC 4 cut(s) 21, 83, 309, 463
DpnII GATC 4 cut(s) 19, 81, 307, 461
Eco130I CCWWGG 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 4 cut(s) 64, 173, 195, 362
FaiI YATR 8 cut(s) 51, 62, 102, 171, 193, 270, 360, 524
FatI CATG 4 cut(s) 60, 169, 191, 358
FbaI TGATCA 1 cut(s) 307
FokI GGATG 1 cut(s) 416
HaeIII GGCC 1 cut(s) 229
HgaI GACGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 4 cut(s) 64, 173, 195, 362
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 2 cut(s) 14, 285
HinfI GANTC 1 cut(s) 392
HpaI GTTAAC 1 cut(s) 457
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 457
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 457
Hpy99I CGWCG 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 3 cut(s) 95, 180, 416
HpySE526I ACGT 1 cut(s) 159
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 4 cut(s) 64, 173, 195, 362
Ksp22I TGATCA 1 cut(s) 307
KspAI GTTAAC 1 cut(s) 457
Kzo9I GATC 4 cut(s) 19, 81, 307, 461
LmnI GCTCC 1 cut(s) 251
LpnPI CCDG 2 cut(s) 202, 374
LweI GCATC 1 cut(s) 120
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 2 cut(s) 172, 293
MalI GATC 4 cut(s) 21, 83, 309, 463
MboI GATC 4 cut(s) 19, 81, 307, 461
MflI RGATCY 1 cut(s) 461
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 6 cut(s) 298, 312, 325, 493, 501, 529
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 7 cut(s) 20, 34, 58, 125, 199, 328, 425
MseI TTAA 3 cut(s) 105, 456, 483
MslI CAYNNNNRTG 1 cut(s) 241
NdeII GATC 4 cut(s) 19, 81, 307, 461
NlaIII CATG 4 cut(s) 64, 173, 195, 362
NmuCI GTSAC 2 cut(s) 172, 293
NspI RCATGY 1 cut(s) 173
NspV TTCGAA 1 cut(s) 34
PciI ACATGT 1 cut(s) 169
PfeI GAWTC 1 cut(s) 392
PscI ACATGT 1 cut(s) 169
PshBI ATTAAT 1 cut(s) 105
PsiI TTATAA 1 cut(s) 51
PspPI GGNCC 1 cut(s) 228
PsuI RGATCY 1 cut(s) 461
RseI CAYNNNNRTG 1 cut(s) 241
SaqAI TTAA 3 cut(s) 105, 456, 483
Sau3AI GATC 4 cut(s) 19, 81, 307, 461
Sau96I GGNCC 1 cut(s) 228
SduI GDGCHC 1 cut(s) 248
SetI ASST 7 cut(s) 18, 31, 136, 162, 289, 339, 482
SfaNI GCATC 1 cut(s) 120
SfuI TTCGAA 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 241
Sse9I AATT 6 cut(s) 298, 312, 325, 493, 501, 529
SspI AATATT 1 cut(s) 349
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 243
TaiI ACGT 1 cut(s) 162
TaqI TCGA 4 cut(s) 7, 34, 114, 121
TasI AATT 6 cut(s) 298, 312, 325, 493, 501, 529
TfiI GAWTC 1 cut(s) 392
Tru1I TTAA 3 cut(s) 105, 456, 483
Tru9I TTAA 3 cut(s) 105, 456, 483
TscAI CASTG 2 cut(s) 187, 246
TseFI GTSAC 2 cut(s) 172, 293
Tsp45I GTSAC 2 cut(s) 172, 293
TspDTI ATGAA 3 cut(s) 225, 369, 464
TspGWI ACGGA 2 cut(s) 238, 454
TspRI CASTG 2 cut(s) 187, 246
VspI ATTAAT 1 cut(s) 105
XapI RAATTY 2 cut(s) 312, 501
XceI RCATGY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.