RLG00000032380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001043
Physical Location & Seq
Forward (+)
14187558 .. 14188861
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032380

Sequence Viewer

Length: 594 bp
ATGGTAGGGTACTCGTTATTTGACCTACAACCCATCCCAAGTTGGGAACCGTCTGTGGAGGAATTAACTACACAAGCTAGAAAACTTGTGGAACTTGTTCCAAGTATTCTGGGTGTAAGGCAAGAGCCTCCATTGAAGCTTATCAAAGCCAGGAAAAGAACTAAGCTAGATATCATGCAGAACTACATGCCATTGGAGGTTGATGATGACTTTGATTTGCCATATGTGAATGGAGTAATTCATATCTCTCCAATTAAGAAGCGGGGTAGACTAAAAGGCAGTAAGAAAAAATACAAGACTAAAGGGCCTAAGCGTAGGAAGACTAGGTTTCCTAAAGAGACTGGGGAAGTCGTGGTGAATGAGGAGTTGACTATGGTTGAAGTTGCAATGGCGATTGAGGATGCAGTCGAGATATATCTGTCTCCTCTCTCTCTCTCGCCGGACCCGGAGTCTTATCCCAACCTCTCCTCTTATCCTCTAATGGCGACGCCAAGGCCTCGACTACTCCTCCTGGTTGTCCGACAAGCTTCCCTACGCCAACTCGCCTTACTGCCTTGTGCTCCTCGGCTCCGTCATCTCCATGTTCCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.48

Weight (kDa)

9.73

Isoelectric Point (pI)

57.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 268
AciI CCGC 1 cut(s) 262
AcyI GRCGYC 1 cut(s) 488
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 2 cut(s) 136, 380
AhdI GACNNNNNGTC 1 cut(s) 448
AjnI CCWGG 2 cut(s) 149, 510
AluBI AGCT 4 cut(s) 77, 139, 166, 527
AluI AGCT 4 cut(s) 77, 139, 166, 527
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 2 cut(s) 332, 426
AoxI GGCC 2 cut(s) 305, 494
Asp700I GAANNNNTTC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 305, 442
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 367
AvaII GGWCC 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 562
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 2 cut(s) 151, 512
BcnI CCSGG 1 cut(s) 446
BcoDI GTCTC 2 cut(s) 332, 426
BfaI CTAG 3 cut(s) 78, 167, 324
Bme1390I CCNGG 3 cut(s) 151, 446, 512
Bme18I GGWCC 1 cut(s) 442
BmeRI GACNNNNNGTC 1 cut(s) 448
BmgT120I GGNCC 2 cut(s) 305, 442
BmiI GGNNCC 3 cut(s) 48, 444, 569
BmrFI CCNGG 3 cut(s) 151, 446, 512
BmrI ACTGGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 391
BmuI ACTGGG 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 326
Bpu10I CCTNAGC 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 488
BsaJI CCNNGG 3 cut(s) 491, 563, 587
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 2 cut(s) 151, 512
BseDI CCNNGG 3 cut(s) 491, 563, 587
BseGI GGATG 2 cut(s) 33, 406
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 5 cut(s) 377, 414, 457, 497, 552
BshFI GGCC 2 cut(s) 307, 496
BsiHKAI GWGCWC 1 cut(s) 562
BsiSI CCGG 2 cut(s) 440, 446
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 332, 426
BsnI GGCC 2 cut(s) 307, 496
Bsp1286I GDGCHC 1 cut(s) 562
BspACI CCGC 1 cut(s) 262
BspANI GGCC 2 cut(s) 307, 496
BspLI GGNNCC 3 cut(s) 48, 444, 569
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 3 cut(s) 491, 563, 587
BssNI GRCGYC 1 cut(s) 488
BssT1I CCWWGG 1 cut(s) 491
Bst2UI CCWGG 2 cut(s) 151, 512
Bst4CI ACNGT 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 488
BstDEI CTNAG 2 cut(s) 162, 309
BstF5I GGATG 2 cut(s) 33, 406
BstMAI GTCTC 2 cut(s) 332, 426
BstNI CCWGG 2 cut(s) 151, 512
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 3 cut(s) 149, 444, 510
BstV2I GAAGAC 1 cut(s) 326
BsuRI GGCC 2 cut(s) 307, 496
BtsCI GGATG 2 cut(s) 33, 406
Cfr13I GGNCC 2 cut(s) 305, 442
CseI GACGC 1 cut(s) 496
Csp6I GTAC 1 cut(s) 10
CviAII CATG 3 cut(s) 175, 187, 581
CviJI RGCY 9 cut(s) 77, 127, 139, 149, 166, 307, 496, 527, 568
CviKI_1 RGCY 9 cut(s) 77, 127, 139, 149, 166, 307, 496, 527, 568
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 2 cut(s) 162, 309
DriI GACNNNNNGTC 1 cut(s) 448
Eam1105I GACNNNNNGTC 1 cut(s) 448
Eco130I CCWWGG 1 cut(s) 491
Eco147I AGGCCT 1 cut(s) 496
Eco32I GATATC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 442
EcoO109I RGGNCCY 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 149, 510
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 491
ErhI CCWWGG 1 cut(s) 491
FaeI CATG 3 cut(s) 178, 190, 584
FaiI YATR 8 cut(s) 176, 188, 223, 225, 243, 374, 415, 582
FatI CATG 3 cut(s) 174, 186, 580
FauI CCCGC 1 cut(s) 255
FauNDI CATATG 1 cut(s) 223
FblI GTMKAC 1 cut(s) 268
FokI GGATG 2 cut(s) 20, 413
FspBI CTAG 3 cut(s) 78, 167, 324
HaeIII GGCC 2 cut(s) 307, 496
HapII CCGG 2 cut(s) 440, 446
HgaI GACGC 1 cut(s) 496
Hin1I GRCGYC 1 cut(s) 488
Hin1II CATG 3 cut(s) 178, 190, 584
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HindIII AAGCTT 2 cut(s) 137, 525
HinfI GANTC 1 cut(s) 449
HpaII CCGG 2 cut(s) 440, 446
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 2 cut(s) 269, 369
Hpy188I TCNGA 1 cut(s) 521
Hpy188III TCNNGA 1 cut(s) 409
Hpy8I GTNNAC 2 cut(s) 269, 369
Hpy99I CGWCG 1 cut(s) 490
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 178, 386, 404
HpyF3I CTNAG 2 cut(s) 162, 309
Hsp92I GRCGYC 1 cut(s) 488
Hsp92II CATG 3 cut(s) 178, 190, 584
LmnI GCTCC 2 cut(s) 565, 573
LpnPI CCDG 8 cut(s) 95, 136, 163, 327, 453, 459, 497, 524
LweI GCATC 1 cut(s) 391
MaeI CTAG 3 cut(s) 78, 167, 324
MboII GAAGA 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 562
MluCI AATT 3 cut(s) 62, 237, 252
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 2 cut(s) 65, 255
MslI CAYNNNNRTG 1 cut(s) 579
MspI CCGG 2 cut(s) 440, 446
MspR9I CCNGG 3 cut(s) 151, 446, 512
MvaI CCWGG 2 cut(s) 151, 512
NciI CCSGG 1 cut(s) 446
NdeI CATATG 1 cut(s) 223
NlaIII CATG 3 cut(s) 178, 190, 584
NlaIV GGNNCC 3 cut(s) 48, 444, 569
NmeAIII GCCGAG 1 cut(s) 544
NspI RCATGY 1 cut(s) 190
PceI AGGCCT 1 cut(s) 496
PdmI GAANNNNTTC 1 cut(s) 96
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
Psp6I CCWGG 2 cut(s) 149, 510
PspGI CCWGG 2 cut(s) 149, 510
PspN4I GGNNCC 3 cut(s) 48, 444, 569
PspPI GGNCC 2 cut(s) 305, 442
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 579
SaqAI TTAA 2 cut(s) 65, 255
Sau96I GGNCC 2 cut(s) 305, 442
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 3 cut(s) 151, 446, 512
SduI GDGCHC 1 cut(s) 562
SetI ASST 8 cut(s) 27, 79, 141, 168, 201, 329, 465, 529
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 579
Sse9I AATT 3 cut(s) 62, 237, 252
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 1 cut(s) 262
SspMI CTAG 3 cut(s) 78, 167, 324
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 3 cut(s) 149, 444, 510
StyI CCWWGG 1 cut(s) 491
TaaI ACNGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 408, 499
TasI AATT 3 cut(s) 62, 237, 252
Tru1I TTAA 2 cut(s) 65, 255
Tru9I TTAA 2 cut(s) 65, 255
TspDTI ATGAA 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 442
XceI RCATGY 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 3 cut(s) 78, 167, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.