Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004253.1

Orthogroup ID

OG0001043

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2471

Gene Structure 2471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004253.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgctcgagtctcattttggtgaagatcttatgatggatactttgtttcagaggtacgcagagctcgtcagcgatcgcttgtcaaaatctagaaccaagtacatcaactcgagctctggtgagagtgtggtggattccatgactcgaagcaagcttgatcggggaggttctcgaatggagggaggtaagagttatggtcgttatagcaacgacatggaggaaatcaagatgatgattcaacaacttgcaaaacgtatcaatcgcatcgaaactcgacacctaggaggtaagagttacgacggggagagagacgtttatcagcgtgtcacttgcatcgaaacctcttgccaagacggtatgggttttgatggggagggagacgttggcccttttcatcactgttctctgttgtgtgagtcggacaaaaaggtggaaccggttagtttcgactatgaaggttcaaatactatctttaatttttcagttgataaaagtttggaaaaagaaaataaagatggagttgtggattttagtttaccaccaatttataattgtttttgtgaggcgtgcagtggcaattgtgatgatcagatttgtgatggaaattgtttagaggttgaaggtaatattgatgaacatggtattgacaaaattgatgtgggtgagaggattgatgatatgaactcaaaccatggtcatattggtgatgccaacgtgggtttcagtattggacttccaagaactaggcatgagcctgattcaatcttggatgagagtactagaagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

262

Amino Acids

29.32

Weight (kDa)

4.69

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07634
prunus_persica	Prupe.1G102800_v2.0.a1 Prupe.8G086900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0246931
rosa_laevigata	RLG00000003129 RLG00000005865 RLG00000005867 RLG00000008042 RLG00000017998 RLG00000019187 RLG00000019483 RLG00000022446 RLG00000023139 RLG00000032380 RLG00000034989 RLG00000037076
rosa_multiflora	Rmu_co8397459.1_g000001 Rmu_sc0000195.1_g000037 Rmu_sc0000516.1_g000018 Rmu_sc0001091.1_g000004 Rmu_sc0001113.1_g000012 Rmu_sc0001673.1_g000033 Rmu_sc0001694.1_g000016 Rmu_sc0001793.1_g000051 Rmu_sc0002676.1_g000007 Rmu_sc0002986.1_g000020 Rmu_sc0004253.1_g000001 Rmu_sc0004478.1_g000012 Rmu_sc0004614.1_g000007 Rmu_sc0005387.1_g000002 Rmu_sc0006592.1_g000013 Rmu_sc0006967.1_g000011 Rmu_sc0011039.1_g000002 Rmu_sc0016880.1_g000004 Rmu_ssc0000182.1_g000020
rosa_roxburghii	Rroxscaffold_1G00024880 Rroxscaffold_1G00053230 Rroxscaffold_1G00068810 Rroxscaffold_1G00068820 Rroxscaffold_2G00094300 Rroxscaffold_2G00095320 Rroxscaffold_2G00095330 Rroxscaffold_2G00108180 Rroxscaffold_2G00130520 Rroxscaffold_2G00131280 Rroxscaffold_3G00229800 Rroxscaffold_4G00279060 Rroxscaffold_4G00312500 Rroxscaffold_4G00312510 Rroxscaffold_7G00215840
rosa_samantha	Rh1BG408300 Rh3AG269100 Rh3CG198400 Rh3CG303300 Rh5AG056400 Rh5DG052900 Rh5DG388100 Rh7BG462700 Rh7CG506000
rosa_wichuraiana	Rw1G013080 Rw2G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
AfaI	GTAC	3 cut(s)	56, 101, 778
AgeI	ACCGGT	1 cut(s)	436
AgsI	TTSAA	4 cut(s)	239, 462, 620, 762
AjuI	GAANNNNNNNTTGG	2 cut(s)	704, 736
AluBI	AGCT	3 cut(s)	64, 114, 154
AluI	AGCT	3 cut(s)	64, 114, 154
Alw21I	GWGCWC	2 cut(s)	66, 116
Alw26I	GTCTC	3 cut(s)	15, 303, 372
Ama87I	CYCGRG	2 cut(s)	5, 109
AoxI	GGCC	1 cut(s)	385
AsiGI	ACCGGT	1 cut(s)	436
AsiSI	GCGATCGC	1 cut(s)	76
AspA2I	CCTAGG	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	4 cut(s)	32, 131, 674, 716
AvaI	CYCGRG	2 cut(s)	5, 109
AvrII	CCTAGG	1 cut(s)	280
BanII	GRGCYC	2 cut(s)	66, 116
Bbv12I	GWGCWC	2 cut(s)	66, 116
BccI	CCATC	4 cut(s)	28, 362, 509, 593
BciVI	GTATCC	1 cut(s)	31
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	3 cut(s)	15, 303, 372
BfaI	CTAG	4 cut(s)	90, 281, 744, 780
BfuI	GTATCC	1 cut(s)	31
BglII	AGATCT	1 cut(s)	25
BlnI	CCTAGG	1 cut(s)	280
BmcAI	AGTACT	1 cut(s)	778
BmeT110I	CYCGRG	2 cut(s)	5, 109
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	435
BmsI	GCATC	3 cut(s)	273, 342, 697
BsaJI	CCNNGG	2 cut(s)	280, 691
BsaWI	WCCGGW	1 cut(s)	436
Bse118I	RCCGGY	1 cut(s)	436
BseDI	CCNNGG	2 cut(s)	280, 691
BseGI	GGATG	1 cut(s)	775
BsgI	GTGCAG	1 cut(s)	589
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	387
BshTI	ACCGGT	1 cut(s)	436
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	66, 116
BsiHKCI	CYCGRG	2 cut(s)	5, 109
BsiSI	CCGG	1 cut(s)	437
BsmAI	GTCTC	3 cut(s)	15, 303, 372
BsmBI	CGTCTC	2 cut(s)	303, 372
BsnI	GGCC	1 cut(s)	387
BsoBI	CYCGRG	2 cut(s)	5, 109
Bsp1286I	GDGCHC	2 cut(s)	66, 116
Bsp143I	GATC	4 cut(s)	25, 73, 157, 586
Bsp19I	CCATGG	1 cut(s)	691
BspANI	GGCC	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	435
BsrFI	RCCGGY	1 cut(s)	436
BssAI	RCCGGY	1 cut(s)	436
BssECI	CCNNGG	2 cut(s)	280, 691
BssMI	GATC	4 cut(s)	25, 73, 157, 586
BssT1I	CCWWGG	2 cut(s)	280, 691
Bst4CI	ACNGT	2 cut(s)	356, 401
BstC8I	GCNNGC	2 cut(s)	152, 568
BstDSI	CCRYGG	1 cut(s)	691
BstF5I	GGATG	1 cut(s)	775
BstKTI	GATC	4 cut(s)	28, 76, 160, 589
BstMAI	GTCTC	3 cut(s)	15, 303, 372
BstMBI	GATC	4 cut(s)	25, 73, 157, 586
BstMCI	CGRYCG	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	691
BtsCI	GGATG	1 cut(s)	775
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	2 cut(s)	397, 577
Cac8I	GCNNGC	2 cut(s)	152, 568
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	3 cut(s)	55, 100, 777
CspAI	ACCGGT	1 cut(s)	436
CviAII	CATG	5 cut(s)	139, 214, 638, 692, 749
CviJI	RGCY	5 cut(s)	64, 114, 154, 387, 754
CviKI_1	RGCY	5 cut(s)	64, 114, 154, 387, 754
CviQI	GTAC	3 cut(s)	55, 100, 777
DpnI	GATC	4 cut(s)	27, 75, 159, 588
DpnII	GATC	4 cut(s)	25, 73, 157, 586
Ecl136II	GAGCTC	2 cut(s)	64, 114
Eco130I	CCWWGG	2 cut(s)	280, 691
Eco24I	GRGCYC	2 cut(s)	66, 116
Eco53kI	GAGCTC	2 cut(s)	64, 114
Eco88I	CYCGRG	2 cut(s)	5, 109
EcoICRI	GAGCTC	2 cut(s)	64, 114
EcoT14I	CCWWGG	2 cut(s)	280, 691
EcoT38I	GRGCYC	2 cut(s)	66, 116
ErhI	CCWWGG	2 cut(s)	280, 691
Esp3I	CGTCTC	2 cut(s)	303, 372
FaeI	CATG	5 cut(s)	142, 217, 641, 695, 752
FatI	CATG	5 cut(s)	138, 213, 637, 691, 748
FbaI	TGATCA	1 cut(s)	586
FokI	GGATG	1 cut(s)	782
FriOI	GRGCYC	2 cut(s)	66, 116
FspBI	CTAG	4 cut(s)	90, 281, 744, 780
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	1 cut(s)	437
Hin1II	CATG	5 cut(s)	142, 217, 641, 695, 752
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	6 cut(s)	8, 134, 142, 235, 416, 758
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	4 cut(s)	32, 131, 674, 716
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188I	TCNGA	3 cut(s)	51, 421, 591
Hpy188III	TCNNGA	3 cut(s)	90, 171, 226
Hpy8I	GTNNAC	1 cut(s)	536
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	449, 614
HpyCH4III	ACNGT	2 cut(s)	356, 401
HpyCH4IV	ACGT	4 cut(s)	253, 312, 381, 714
HpyCH4V	TGCA	3 cut(s)	248, 333, 570
HpySE526I	ACGT	4 cut(s)	253, 312, 381, 714
Hsp92II	CATG	5 cut(s)	142, 217, 641, 695, 752
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	4 cut(s)	25, 73, 157, 586
LpnPI	CCDG	3 cut(s)	102, 450, 768
LweI	GCATC	3 cut(s)	273, 342, 697
MaeI	CTAG	4 cut(s)	90, 281, 744, 780
MaeII	ACGT	4 cut(s)	253, 312, 381, 714
MaeIII	GTNAC	2 cut(s)	293, 325
MalI	GATC	4 cut(s)	27, 75, 159, 588
MboI	GATC	4 cut(s)	25, 73, 157, 586
MboII	GAAGA	1 cut(s)	35
MfeI	CAATTG	1 cut(s)	577
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	66, 116
MluCI	AATT	6 cut(s)	475, 543, 550, 577, 604, 651
MlyI	GAGTC	3 cut(s)	17, 136, 425
MmeI	TCCRAC	1 cut(s)	399
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	2 cut(s)	18, 702
MspI	CCGG	1 cut(s)	437
MunI	CAATTG	1 cut(s)	577
NcoI	CCATGG	1 cut(s)	691
NdeII	GATC	4 cut(s)	25, 73, 157, 586
NlaIII	CATG	5 cut(s)	142, 217, 641, 695, 752
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	325
PaeR7I	CTCGAG	2 cut(s)	5, 109
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	3 cut(s)	134, 235, 758
PinAI	ACCGGT	1 cut(s)	436
Ple19I	CGATCG	1 cut(s)	76
PleI	GAGTC	3 cut(s)	16, 136, 424
PpsI	GAGTC	3 cut(s)	16, 136, 424
PsiI	TTATAA	1 cut(s)	549
Psp124BI	GAGCTC	2 cut(s)	66, 116
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	386
PspXI	VCTCGAGB	2 cut(s)	5, 109
PsuI	RGATCY	1 cut(s)	25
PvuI	CGATCG	1 cut(s)	76
RgaI	GCGATCGC	1 cut(s)	76
RsaI	GTAC	3 cut(s)	56, 101, 778
RsaNI	GTAC	3 cut(s)	55, 100, 777
RseI	CAYNNNNRTG	2 cut(s)	18, 702
SacI	GAGCTC	2 cut(s)	66, 116
SaqAI	TTAA	1 cut(s)	474
Sau3AI	GATC	4 cut(s)	25, 73, 157, 586
Sau96I	GGNCC	1 cut(s)	386
ScaI	AGTACT	1 cut(s)	778
SchI	GAGTC	3 cut(s)	17, 136, 425
SduI	GDGCHC	2 cut(s)	66, 116
SfaAI	GCGATCGC	1 cut(s)	76
SfaNI	GCATC	3 cut(s)	273, 342, 697
Sfr274I	CTCGAG	2 cut(s)	5, 109
SgfI	GCGATCGC	1 cut(s)	76
SlaI	CTCGAG	2 cut(s)	5, 109
SmiMI	CAYNNNNRTG	2 cut(s)	18, 702
SmlI	CTYRAG	2 cut(s)	5, 109
SmoI	CTYRAG	2 cut(s)	5, 109
Sse9I	AATT	6 cut(s)	475, 543, 550, 577, 604, 651
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	4 cut(s)	90, 281, 744, 780
SstI	GAGCTC	2 cut(s)	66, 116
StyI	CCWWGG	2 cut(s)	280, 691
TaaI	ACNGT	2 cut(s)	356, 401
TaiI	ACGT	4 cut(s)	256, 315, 384, 717
TaqI	TCGA	8 cut(s)	6, 110, 145, 172, 267, 274, 336, 447
TasI	AATT	6 cut(s)	475, 543, 550, 577, 604, 651
TatI	WGTACW	2 cut(s)	99, 776
TfiI	GAWTC	3 cut(s)	134, 235, 758
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	2 cut(s)	404, 577
TseFI	GTSAC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	4 cut(s)	383, 468, 648, 695
TspRI	CASTG	2 cut(s)	404, 577
XbaI	TCTAGA	1 cut(s)	89
XcmI	CCANNNNNNNNNTGG	1 cut(s)	698
XhoI	CTCGAG	2 cut(s)	5, 109
XmaJI	CCTAGG	1 cut(s)	280
XspI	CTAG	4 cut(s)	90, 281, 744, 780
ZrmI	AGTACT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.