RLG00000019187

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001043
Physical Location & Seq
Reverse (-)
47961119 .. 47961598
480 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019187

Sequence Viewer

Length: 357 bp
ATGGGTGAGAGGATTGATGATATGAAATCAAACCATGGTCATATTGGTGATGCCAATGTGGATTTCAATCTTGGACTTCCAAGAACTAGGCATGAGCAGGATTCAATCTTGGTTGAGAGTAATACAAGTGTGGATTTTGGAGGAATTACCTACAAAACAAAAGTTCACATATCCGTTGAATTTGTTGGGTTTAATGTTTTCAATTTTCAAATTCCCAAGATATTAGTTGATATTGTCAATCAGATGAAGAATGGTGGTAAATTTTGGTTGGCAAAAACCAAATCTCGCAAGTCAAGATTAGGAAGGACGAATTCTTTCCAACGAGGGAAGTCTGATGCTGGAGCATATGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.18

Weight (kDa)

9.69

Isoelectric Point (pI)

16.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 179, 210, 260, 310
AgsI TTSAA 5 cut(s) 67, 105, 179, 202, 209
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
ApoI RAATTY 4 cut(s) 179, 210, 260, 310
Asp700I GAANNNNTTC 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 17, 59
BfaI CTAG 1 cut(s) 87
BmsI GCATC 2 cut(s) 40, 325
BsaBI GATNNNNATC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 34
Bse8I GATNNNNATC 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 34
BseJI GATNNNNATC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 34
BstDSI CCRYGG 1 cut(s) 34
BtgI CCRYGG 1 cut(s) 34
CviAII CATG 2 cut(s) 35, 92
Eco130I CCWWGG 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 2 cut(s) 38, 95
FaiI YATR 7 cut(s) 23, 36, 42, 93, 170, 346, 348
FatI CATG 2 cut(s) 34, 91
FauNDI CATATG 1 cut(s) 346
FspBI CTAG 1 cut(s) 87
Hin1II CATG 2 cut(s) 38, 95
HinfI GANTC 1 cut(s) 101
HphI GGTGA 2 cut(s) 17, 59
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 2 cut(s) 243, 334
Hpy188III TCNNGA 1 cut(s) 294
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 1 cut(s) 297
Hsp92II CATG 2 cut(s) 38, 95
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 2 cut(s) 83, 324
LweI GCATC 2 cut(s) 40, 325
MaeI CTAG 1 cut(s) 87
MboII GAAGA 1 cut(s) 259
MluCI AATT 6 cut(s) 144, 179, 202, 210, 260, 310
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 3 cut(s) 3, 134, 317
MroXI GAANNNNTTC 1 cut(s) 314
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 45
NcoI CCATGG 1 cut(s) 34
NdeI CATATG 1 cut(s) 346
NlaIII CATG 2 cut(s) 38, 95
PdmI GAANNNNTTC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 192
SetI ASST 1 cut(s) 152
SfaNI GCATC 2 cut(s) 40, 325
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 6 cut(s) 144, 179, 202, 210, 260, 310
SspMI CTAG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 34
TasI AATT 6 cut(s) 144, 179, 202, 210, 260, 310
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TspDTI ATGAA 2 cut(s) 38, 260
TspGWI ACGGA 1 cut(s) 163
XapI RAATTY 4 cut(s) 179, 210, 260, 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.