Rmu_sc0001793.1_g000051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001793.1
OG0001043
Physical Location & Seq
Reverse (-)
221976 .. 226466
4491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001793.1_g000051.1.cds

Sequence Viewer

Length: 1566 bp
atgcttagccatgggttgtcaatcgccgaaccggacaggcaaccacgcggtggatatgagagcaaccgtctcctgcgtcatgaggagcggatcggggcgcgcggcttcttgatcatcaaccctaaccaagatttgcaatcgccgtcctcgatcggcaaagatgagatggtggaaggacgccgagatcttcatccccaactgcctcgccaacctcgtcctgcagagatggtgagctttggcaagagcttggtggatttcatgtctcaggtcgggcgacgaaggggaggttttcgaatggagaatcgtgacatcaacaacgacatggctgaaatccaaaggatgcttcagcaacttgcggtacgtattgatcgcatcgaagctcgacgatggcgtcgtaagagttccaacggggagagagatgttaccatctatcatcaacgtgttgatcgcatcgaaactttctaccaagatggtgacggttccgacggggagatatgcgttggcccaattcataattgtgctccgctgtgtgagtcaaatgaagagggacatagtactttcaactattccggttgtaagtccactatctttaattttccatttgttgaggaagtatttttagaaaaagaaaaaaaaaatttcatgagttttgatataccaccgaagtatgattgttatgaagattctgaagtttgtgatggtggtgtggaggaccataggaaaaatgaatttgttcctagaaattgtgatgatgaagacgacaataaagccgcaatcaagtcaatattgtggaaagatattgagcataaatttgttgattttgttggagttaatccattcattatgcatattcctaaagaattaagctttggcaagagcttggtggatttcatgtctcaagtcgggcgacgaaggggaggttttcgaatggagaatcgtgacatcaacaacgacatggctgaaatccaaaggatgcttcagcaacttgtggtacgtattgatcgcatcgaagctcgacgatggcgtcgtaagagttccgacggggagagagatgttaccatctatcatcaacgtgttgatcgcatcgaaactttctaccaagatggtgatggttccgacggggagatatgcgttggcccaattcataattgtgctccgctgtgtgagtcaaatgaagagggacatagtactttcaactattccggttgtaagtccactatctttaattttccatttgttgaggaagtatttttagaaaaagaaaaaaaaaatttcatgagttttgatataccaccgaagtatgattgttatgaagattctgaagtttgtgatggtggtgtggaggaccataggaaaaatgaatttgttcctagaaattgtgatgatgaagacgacaataaagccgcaatcaagtcaatattgtggaaagatattgagcataaatttgttgattttgttggagttaatccattcattatgcatattcccaaagaattagttaatcttgtcactcagataaaagatggagcatatgtggcaatatcaaatgatgcatttgatatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

521

Amino Acids

60.33

Weight (kDa)

5.21

Isoelectric Point (pI)

60.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 390, 1023
AccB7I CCANNNNNTGG 1 cut(s) 50
AccBSI CCGCTC 1 cut(s) 88
AccII CGCG 3 cut(s) 48, 100, 102
AciI CCGC 8 cut(s) 48, 88, 102, 356, 524, 771, 1157, 1404
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 6 cut(s) 637, 728, 809, 1270, 1361, 1442
AcuI CTGAAG 4 cut(s) 329, 708, 962, 1341
AcyI GRCGYC 3 cut(s) 178, 391, 1024
AdeI CACNNNGTG 1 cut(s) 50
AfaI GTAC 4 cut(s) 360, 556, 993, 1189
AfiI CCNNNNNNNGG 1 cut(s) 50
AflIII ACRYGT 2 cut(s) 439, 1072
AgsI TTSAA 2 cut(s) 562, 1195
AjuI GAANNNNNNNTTGG 6 cut(s) 327, 359, 852, 884, 960, 992
AluBI AGCT 6 cut(s) 234, 246, 380, 867, 879, 1013
AluI AGCT 6 cut(s) 234, 246, 380, 867, 879, 1013
Alw21I GWGCWC 2 cut(s) 523, 1156
Alw26I GTCTC 3 cut(s) 74, 267, 900
AlwI GGATC 1 cut(s) 98
AoxI GGCC 2 cut(s) 502, 1135
ApoI RAATTY 6 cut(s) 637, 728, 809, 1270, 1361, 1442
Asp700I GAANNNNTTC 2 cut(s) 732, 1365
AspLEI GCGC 2 cut(s) 100, 102
AspS9I GGNCC 4 cut(s) 503, 712, 1136, 1345
AsuHPI GGTGA 3 cut(s) 241, 485, 1118
AsuII TTCGAA 2 cut(s) 292, 925
AvaII GGWCC 2 cut(s) 712, 1345
BbsI GAAGAC 2 cut(s) 762, 1395
Bbv12I GWGCWC 2 cut(s) 523, 1156
BceAI ACGGC 1 cut(s) 127
BclI TGATCA 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 74, 267, 900
BfaI CTAG 2 cut(s) 738, 1371
BfmI CTRYAG 1 cut(s) 219
BglII AGATCT 1 cut(s) 184
BisI GCNGC 3 cut(s) 103, 771, 1404
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 3 cut(s) 104, 772, 1405
BmcAI AGTACT 2 cut(s) 556, 1189
Bme18I GGWCC 2 cut(s) 712, 1345
BmgT120I GGNCC 4 cut(s) 503, 712, 1136, 1345
BmiI GGNNCC 2 cut(s) 481, 1114
BmsI GCATC 7 cut(s) 330, 381, 459, 963, 1014, 1092, 1540
BpiI GAAGAC 2 cut(s) 762, 1395
Bpu1102I GCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 2 cut(s) 292, 925
BpuEI CTTGAG 1 cut(s) 882
BsaAI YACGTR 2 cut(s) 362, 995
BsaBI GATNNNNATC 1 cut(s) 189
BsaHI GRCGYC 3 cut(s) 178, 391, 1024
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 3 cut(s) 31, 569, 1202
BsaXI ACNNNNNCTCC 2 cut(s) 1518, 1548
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse8I GATNNNNATC 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 3 cut(s) 190, 345, 978
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 2 cut(s) 278, 1526
BsePI GCGCGC 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 98
Bsh1236I CGCG 3 cut(s) 48, 100, 102
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 504, 1137
BsiEI CGRYCG 1 cut(s) 153
BsiHKAI GWGCWC 2 cut(s) 523, 1156
BsiSI CCGG 3 cut(s) 32, 570, 1203
BslFI GGGAC 2 cut(s) 561, 1194
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 3 cut(s) 74, 267, 900
BsmBI CGTCTC 1 cut(s) 74
BsmFI GGGAC 2 cut(s) 561, 1194
BsnI GGCC 2 cut(s) 504, 1137
Bsp119I TTCGAA 2 cut(s) 292, 925
Bsp1286I GDGCHC 2 cut(s) 523, 1156
Bsp143I GATC 8 cut(s) 90, 111, 150, 184, 367, 445, 1000, 1078
Bsp1720I GCTNAGC 1 cut(s) 5
Bsp19I CCATGG 1 cut(s) 10
BspACI CCGC 8 cut(s) 48, 88, 102, 356, 524, 771, 1157, 1404
BspANI GGCC 2 cut(s) 504, 1137
BspCNI CTCAG 2 cut(s) 277, 1525
BspFNI CGCG 3 cut(s) 48, 100, 102
BspHI TCATGA 3 cut(s) 79, 642, 1275
BspLI GGNNCC 2 cut(s) 481, 1114
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 1 cut(s) 98
BspT104I TTCGAA 2 cut(s) 292, 925
BsrBI CCGCTC 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 10
BssHII GCGCGC 1 cut(s) 98
BssMI GATC 8 cut(s) 90, 111, 150, 184, 367, 445, 1000, 1078
BssNI GRCGYC 3 cut(s) 178, 391, 1024
BssT1I CCWWGG 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 68, 479
Bst6I CTCTTC 2 cut(s) 537, 1170
BstACI GRCGYC 3 cut(s) 178, 391, 1024
BstBAI YACGTR 2 cut(s) 362, 995
BstBI TTCGAA 2 cut(s) 292, 925
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 3 cut(s) 5, 264, 1512
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 3 cut(s) 190, 345, 978
BstFNI CGCG 3 cut(s) 48, 100, 102
BstHHI GCGC 2 cut(s) 100, 102
BstKTI GATC 8 cut(s) 93, 114, 153, 187, 370, 448, 1003, 1081
BstMAI GTCTC 3 cut(s) 74, 267, 900
BstMBI GATC 8 cut(s) 90, 111, 150, 184, 367, 445, 1000, 1078
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 1535
BstSFI CTRYAG 1 cut(s) 219
BstSNI TACGTA 2 cut(s) 362, 995
BstUI CGCG 3 cut(s) 48, 100, 102
BstV2I GAAGAC 2 cut(s) 762, 1395
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 2 cut(s) 504, 1137
BtgI CCRYGG 1 cut(s) 10
BtsCI GGATG 3 cut(s) 190, 345, 978
Cac8I GCNNGC 1 cut(s) 100
CciI TCATGA 3 cut(s) 79, 642, 1275
CfoI GCGC 2 cut(s) 100, 102
Cfr13I GGNCC 4 cut(s) 503, 712, 1136, 1345
CseI GACGC 4 cut(s) 65, 186, 380, 1013
Csp6I GTAC 4 cut(s) 359, 555, 992, 1188
CviAII CATG 8 cut(s) 11, 80, 259, 322, 643, 892, 955, 1276
CviQI GTAC 4 cut(s) 359, 555, 992, 1188
DdeI CTNAG 3 cut(s) 5, 264, 1512
DpnI GATC 8 cut(s) 92, 113, 152, 186, 369, 447, 1002, 1080
DpnII GATC 8 cut(s) 90, 111, 150, 184, 367, 445, 1000, 1078
DraIII CACNNNGTG 1 cut(s) 50
DrdI GACNNNNNNGTC 2 cut(s) 390, 1023
DseDI GACNNNNNNGTC 2 cut(s) 390, 1023
Eam1104I CTCTTC 2 cut(s) 537, 1170
EarI CTCTTC 2 cut(s) 537, 1170
Eco105I TACGTA 2 cut(s) 362, 995
Eco130I CCWWGG 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 712, 1345
Eco57I CTGAAG 4 cut(s) 329, 708, 962, 1341
EcoT14I CCWWGG 1 cut(s) 10
EcoT22I ATGCAT 3 cut(s) 849, 1482, 1555
ErhI CCWWGG 1 cut(s) 10
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 8 cut(s) 14, 83, 262, 325, 646, 895, 958, 1279
FaqI GGGAC 2 cut(s) 561, 1194
FatI CATG 8 cut(s) 10, 79, 258, 321, 642, 891, 954, 1275
FauNDI CATATG 1 cut(s) 1531
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 103, 771, 1404
FokI GGATG 3 cut(s) 177, 352, 985
Fsp4HI GCNGC 3 cut(s) 103, 771, 1404
FspBI CTAG 2 cut(s) 738, 1371
GlaI GCGC 2 cut(s) 99, 101
GluI GCNGC 3 cut(s) 103, 771, 1404
HaeIII GGCC 2 cut(s) 504, 1137
HapII CCGG 3 cut(s) 32, 570, 1203
HgaI GACGC 4 cut(s) 65, 186, 380, 1013
HhaI GCGC 2 cut(s) 100, 102
Hin1I GRCGYC 3 cut(s) 178, 391, 1024
Hin1II CATG 8 cut(s) 14, 83, 262, 325, 646, 895, 958, 1279
Hin6I GCGC 2 cut(s) 98, 100
HinP1I GCGC 2 cut(s) 98, 100
HindIII AAGCTT 1 cut(s) 865
HinfI GANTC 6 cut(s) 301, 533, 683, 934, 1166, 1316
HpaII CCGG 3 cut(s) 32, 570, 1203
HphI GGTGA 3 cut(s) 241, 485, 1118
Hpy166II GTNNAC 2 cut(s) 582, 1215
Hpy188I TCNGA 6 cut(s) 484, 688, 1039, 1117, 1321, 1515
Hpy188III TCNNGA 6 cut(s) 80, 109, 305, 643, 938, 1276
Hpy8I GTNNAC 2 cut(s) 582, 1215
Hpy99I CGWCG 9 cut(s) 279, 387, 396, 488, 912, 1020, 1029, 1043, 1121
HpyAV CCTTC 3 cut(s) 167, 273, 906
HpyCH4III ACNGT 2 cut(s) 68, 479
HpyCH4IV ACGT 4 cut(s) 361, 439, 994, 1072
HpyCH4V TGCA 5 cut(s) 136, 221, 847, 1480, 1553
HpyF10VI GCNNNNNNNGC 1 cut(s) 1535
HpyF3I CTNAG 3 cut(s) 5, 264, 1512
HpySE526I ACGT 4 cut(s) 361, 439, 994, 1072
Hsp92I GRCGYC 3 cut(s) 178, 391, 1024
Hsp92II CATG 8 cut(s) 14, 83, 262, 325, 646, 895, 958, 1279
HspAI GCGC 2 cut(s) 98, 100
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 8 cut(s) 90, 111, 150, 184, 367, 445, 1000, 1078
LmnI GCTCC 4 cut(s) 85, 526, 1159, 1526
LpnPI CCDG 7 cut(s) 22, 45, 86, 231, 251, 583, 1216
LweI GCATC 7 cut(s) 330, 381, 459, 963, 1014, 1092, 1540
MaeI CTAG 2 cut(s) 738, 1371
MaeII ACGT 4 cut(s) 361, 439, 994, 1072
MaeIII GTNAC 6 cut(s) 305, 421, 473, 938, 1054, 1507
MalI GATC 8 cut(s) 92, 113, 152, 186, 369, 447, 1002, 1080
MbiI CCGCTC 1 cut(s) 88
MboI GATC 8 cut(s) 90, 111, 150, 184, 367, 445, 1000, 1078
MboII GAAGA 7 cut(s) 179, 554, 692, 767, 1187, 1325, 1400
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 2 cut(s) 523, 1156
MlyI GAGTC 2 cut(s) 542, 1175
MmeI TCCRAC 6 cut(s) 429, 507, 805, 1062, 1140, 1438
Mph1103I ATGCAT 3 cut(s) 849, 1482, 1555
MroXI GAANNNNTTC 2 cut(s) 732, 1365
MseI TTAA 7 cut(s) 591, 831, 863, 1224, 1464, 1500, 1564
MslI CAYNNNNRTG 4 cut(s) 438, 516, 1071, 1149
MspA1I CMGCKG 2 cut(s) 526, 1159
MspI CCGG 3 cut(s) 32, 570, 1203
MvnI CGCG 3 cut(s) 48, 100, 102
MwoI GCNNNNNNNGC 1 cut(s) 1535
NcoI CCATGG 1 cut(s) 10
NdeI CATATG 1 cut(s) 1531
NdeII GATC 8 cut(s) 90, 111, 150, 184, 367, 445, 1000, 1078
NlaIII CATG 8 cut(s) 14, 83, 262, 325, 646, 895, 958, 1279
NlaIV GGNNCC 2 cut(s) 481, 1114
NmeAIII GCCGAG 1 cut(s) 206
NmuCI GTSAC 4 cut(s) 305, 473, 938, 1507
NsiI ATGCAT 3 cut(s) 849, 1482, 1555
NspV TTCGAA 2 cut(s) 292, 925
PagI TCATGA 3 cut(s) 79, 642, 1275
PauI GCGCGC 1 cut(s) 98
PcsI WCGNNNNNNNCGW 6 cut(s) 146, 211, 388, 391, 1021, 1024
PdmI GAANNNNTTC 2 cut(s) 732, 1365
PfeI GAWTC 4 cut(s) 301, 683, 934, 1316
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 3 cut(s) 104, 772, 1405
Ple19I CGATCG 1 cut(s) 153
PleI GAGTC 2 cut(s) 541, 1174
PpsI GAGTC 2 cut(s) 541, 1174
Ppu21I YACGTR 2 cut(s) 362, 995
PspN4I GGNNCC 2 cut(s) 481, 1114
PspPI GGNCC 4 cut(s) 503, 712, 1136, 1345
PstI CTGCAG 1 cut(s) 223
PsuI RGATCY 1 cut(s) 184
PteI GCGCGC 1 cut(s) 98
PvuI CGATCG 1 cut(s) 153
RsaI GTAC 4 cut(s) 360, 556, 993, 1189
RsaNI GTAC 4 cut(s) 359, 555, 992, 1188
RseI CAYNNNNRTG 4 cut(s) 438, 516, 1071, 1149
SaqAI TTAA 7 cut(s) 591, 831, 863, 1224, 1464, 1500, 1564
SatI GCNGC 3 cut(s) 103, 771, 1404
Sau3AI GATC 8 cut(s) 90, 111, 150, 184, 367, 445, 1000, 1078
Sau96I GGNCC 4 cut(s) 503, 712, 1136, 1345
ScaI AGTACT 2 cut(s) 556, 1189
SchI GAGTC 2 cut(s) 542, 1175
SduI GDGCHC 2 cut(s) 523, 1156
SfaNI GCATC 7 cut(s) 330, 381, 459, 963, 1014, 1092, 1540
SfcI CTRYAG 1 cut(s) 219
SfuI TTCGAA 2 cut(s) 292, 925
SinI GGWCC 2 cut(s) 712, 1345
SmiMI CAYNNNNRTG 4 cut(s) 438, 516, 1071, 1149
SmlI CTYRAG 1 cut(s) 897
SmoI CTYRAG 1 cut(s) 897
SnaBI TACGTA 2 cut(s) 362, 995
SsiI CCGC 8 cut(s) 48, 88, 102, 356, 524, 771, 1157, 1404
SspI AATATT 2 cut(s) 786, 1419
SspMI CTAG 2 cut(s) 738, 1371
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 68, 479
TaiI ACGT 4 cut(s) 364, 442, 997, 1075
TaqI TCGA 9 cut(s) 149, 292, 375, 382, 453, 925, 1008, 1015, 1086
TatI WGTACW 2 cut(s) 554, 1187
TauI GCSGC 3 cut(s) 105, 773, 1406
TfiI GAWTC 4 cut(s) 301, 683, 934, 1316
Tru1I TTAA 7 cut(s) 591, 831, 863, 1224, 1464, 1500, 1564
Tru9I TTAA 7 cut(s) 591, 831, 863, 1224, 1464, 1500, 1564
TseFI GTSAC 4 cut(s) 305, 473, 938, 1507
Tsp45I GTSAC 4 cut(s) 305, 473, 938, 1507
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 2 cut(s) 712, 1345
XapI RAATTY 6 cut(s) 637, 728, 809, 1270, 1361, 1442
XcmI CCANNNNNNNNNTGG 1 cut(s) 1106
XmnI GAANNNNTTC 2 cut(s) 732, 1365
XspI CTAG 2 cut(s) 738, 1371
ZrmI AGTACT 2 cut(s) 556, 1189
Zsp2I ATGCAT 3 cut(s) 849, 1482, 1555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.