Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001043

Physical Location & Seq

Genomic Coordinates Reverse (-)

1952414 .. 1955253

Gene Structure 2840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCAGAACACAAGCAGCTTGCTACTGAACTTTGAGGCAGAGATGGAAGATCAGCAACCAAGTCTAAGCCCGGCAGCGCGTCTGTTTCACTCACCAAAGTTCAGCTGCTATATTGTCATAAGAATGGGGTGCAGCATCAGGATCAATCCTGAAGTAATCAGCGCCGGCTTGAAGGAAACCTTGTATAAGCATCCTCGCTTCTCTAGCAAAATGCAACGACATGGAGGAAATCAAGATGATGATTCAACAACTTGCGAACGTATCAATCGCATCGAAACTCGATGCTTAGGAGGTAAGAGTTACGACGGGGAGAGAGACGTTTATCGGCGTGTCACTTGCATCGAAACTTCTTGCCAAGATGGTGTGGGGTTTGACGGGGAGGGAGACGTTGACCCTTTTCATCACTGTGCTCTTTTGTGTGAGTCGGACGAAAAGGTGGAACCGGTTAGTTTCGACTATGAAGGTTCAAATACTATCTTTAATTTTTCAGTTGATAAAAGTTTGGAAAAAGAAAATAAAGATGGAGTTGTGGATTTTAGTTTGCCACCAATTTATGATTGTTTTTGTGAGGCGTGCAGTGGCAATTGTGATGATCAGATTTGTGATGGAAATTGCTTGGAGGTTGAAGGTAATATTGATGAACATGGTAGCAATACTATTGATAAAGGGTCTGAGCTAGCAGTAGGAAATATTACTATGCACATGCAAGGAATTGATCCAATTATACAAGTCGTTGAAGCTACCGTACCATCAATTGAAGTGGAAGACCTATACCCATATATAGGTATTGACAAAATTGATGTGGGTGAGAGGATTGATGATATGAACTCAAACCATGGTCATATTGGTGATGCCAACGTGGGTTTCAGTCTTGGACTTCCAAGAACTAGGCATGAGCCGGATTCAATCTTGGATGAGAGTACTACAAGTGTGAGTTTTGGAGGCATTACCTACAAAATAAATGTTCACAAATCCGTCGATTTTGTTGGGTTTAATGTTTTCAATTTCCACATTCCCAAGATATTAGTTGATATTGTCAATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

348

Amino Acids

38.63

Weight (kDa)

4.59

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07634
prunus_persica	Prupe.1G102800_v2.0.a1 Prupe.8G086900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0246931
rosa_laevigata	RLG00000003129 RLG00000005865 RLG00000005867 RLG00000008042 RLG00000017998 RLG00000019187 RLG00000019483 RLG00000022446 RLG00000023139 RLG00000032380 RLG00000034989 RLG00000037076
rosa_multiflora	Rmu_co8397459.1_g000001 Rmu_sc0000195.1_g000037 Rmu_sc0000516.1_g000018 Rmu_sc0001091.1_g000004 Rmu_sc0001113.1_g000012 Rmu_sc0001673.1_g000033 Rmu_sc0001694.1_g000016 Rmu_sc0001793.1_g000051 Rmu_sc0002676.1_g000007 Rmu_sc0002986.1_g000020 Rmu_sc0004253.1_g000001 Rmu_sc0004478.1_g000012 Rmu_sc0004614.1_g000007 Rmu_sc0005387.1_g000002 Rmu_sc0006592.1_g000013 Rmu_sc0006967.1_g000011 Rmu_sc0011039.1_g000002 Rmu_sc0016880.1_g000004 Rmu_ssc0000182.1_g000020
rosa_roxburghii	Rroxscaffold_1G00024880 Rroxscaffold_1G00053230 Rroxscaffold_1G00068810 Rroxscaffold_1G00068820 Rroxscaffold_2G00094300 Rroxscaffold_2G00095320 Rroxscaffold_2G00095330 Rroxscaffold_2G00108180 Rroxscaffold_2G00130520 Rroxscaffold_2G00131280 Rroxscaffold_3G00229800 Rroxscaffold_4G00279060 Rroxscaffold_4G00312500 Rroxscaffold_4G00312510 Rroxscaffold_7G00215840
rosa_samantha	Rh1BG408300 Rh3AG269100 Rh3CG198400 Rh3CG303300 Rh5AG056400 Rh5DG052900 Rh5DG388100 Rh7BG462700 Rh7CG506000
rosa_wichuraiana	Rw1G013080 Rw2G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	79
AclWI	GGATC	2 cut(s)	149, 710
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	2 cut(s)	747, 922
AfiI	CCNNNNNNNGG	1 cut(s)	782
AgeI	ACCGGT	1 cut(s)	442
AgsI	TTSAA	8 cut(s)	172, 246, 468, 626, 737, 758, 906, 1003
AjuI	GAANNNNNNNTTGG	2 cut(s)	848, 880
AluBI	AGCT	4 cut(s)	18, 105, 676, 740
AluI	AGCT	4 cut(s)	18, 105, 676, 740
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	2 cut(s)	309, 378
AlwI	GGATC	2 cut(s)	149, 710
ApeKI	GCWGC	4 cut(s)	15, 74, 105, 132
AsiGI	ACCGGT	1 cut(s)	442
AspLEI	GCGC	2 cut(s)	79, 164
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	3 cut(s)	84, 818, 860
AsuNHI	GCTAGC	1 cut(s)	676
BarI	GAAGNNNNNNTAC	2 cut(s)	729, 761
BbsI	GAAGAC	1 cut(s)	771
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	4 cut(s)	27, 86, 92, 144
BccI	CCATC	5 cut(s)	37, 353, 515, 599, 757
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	309, 378
BfaI	CTAG	3 cut(s)	204, 677, 888
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	4 cut(s)	16, 75, 106, 133
BlsI	GCNGC	4 cut(s)	17, 76, 107, 134
BmcAI	AGTACT	1 cut(s)	922
Bme1390I	CCNGG	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	6 cut(s)	144, 199, 272, 279, 348, 841
BmtI	GCTAGC	1 cut(s)	680
BpiI	GAAGAC	1 cut(s)	771
Bpu10I	CCTNAGC	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	1042
BsaJI	CCNNGG	1 cut(s)	835
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	1 cut(s)	782
Bse118I	RCCGGY	2 cut(s)	164, 442
BseCI	ATCGAT	1 cut(s)	1042
BseDI	CCNNGG	1 cut(s)	835
BseGI	GGATG	2 cut(s)	190, 919
BseLI	CCNNNNNNNGG	1 cut(s)	782
BseMII	CTCAG	1 cut(s)	663
BseXI	GCAGC	4 cut(s)	27, 86, 92, 144
BsgI	GTGCAG	2 cut(s)	151, 595
Bsh1236I	CGCG	1 cut(s)	79
BshTI	ACCGGT	1 cut(s)	442
BshVI	ATCGAT	1 cut(s)	1042
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	4 cut(s)	71, 165, 443, 899
BslI	CCNNNNNNNGG	1 cut(s)	782
BsmAI	GTCTC	2 cut(s)	309, 378
BsmBI	CGTCTC	2 cut(s)	309, 378
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	4 cut(s)	49, 141, 592, 715
Bsp19I	CCATGG	1 cut(s)	835
BspCNI	CTCAG	1 cut(s)	664
BspDI	ATCGAT	1 cut(s)	1042
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	441
BspOI	GCTAGC	1 cut(s)	680
BspPI	GGATC	2 cut(s)	149, 710
BsrFI	RCCGGY	2 cut(s)	164, 442
BssAI	RCCGGY	2 cut(s)	164, 442
BssECI	CCNNGG	1 cut(s)	835
BssMI	GATC	4 cut(s)	49, 141, 592, 715
BssT1I	CCWWGG	1 cut(s)	835
Bst4CI	ACNGT	2 cut(s)	407, 745
BstC8I	GCNNGC	4 cut(s)	20, 166, 574, 678
BstDEI	CTNAG	3 cut(s)	65, 286, 672
BstDSI	CCRYGG	1 cut(s)	835
BstF5I	GGATG	2 cut(s)	190, 919
BstFNI	CGCG	1 cut(s)	79
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	79, 164
BstKTI	GATC	4 cut(s)	52, 144, 595, 718
BstMAI	GTCTC	2 cut(s)	309, 378
BstMBI	GATC	4 cut(s)	49, 141, 592, 715
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	706
BstSCI	CCNGG	1 cut(s)	69
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	4 cut(s)	27, 86, 92, 144
BstV2I	GAAGAC	1 cut(s)	771
Bsu15I	ATCGAT	1 cut(s)	1042
BsuTUI	ATCGAT	1 cut(s)	1042
BtgI	CCRYGG	1 cut(s)	835
BtsCI	GGATG	2 cut(s)	190, 919
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	2 cut(s)	403, 583
Cac8I	GCNNGC	4 cut(s)	20, 166, 574, 678
CfoI	GCGC	2 cut(s)	79, 164
Cfr10I	RCCGGY	2 cut(s)	164, 442
ClaI	ATCGAT	1 cut(s)	1042
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	746, 921
CspAI	ACCGGT	1 cut(s)	442
CspCI	CAANNNNNGTGG	2 cut(s)	741, 776
CviAII	CATG	5 cut(s)	221, 644, 703, 836, 893
CviJI	RGCY	7 cut(s)	18, 69, 105, 168, 676, 740, 898
CviKI_1	RGCY	7 cut(s)	18, 69, 105, 168, 676, 740, 898
CviQI	GTAC	2 cut(s)	746, 921
DdeI	CTNAG	3 cut(s)	65, 286, 672
DpnI	GATC	4 cut(s)	51, 143, 594, 717
DpnII	GATC	4 cut(s)	49, 141, 592, 715
Eco130I	CCWWGG	1 cut(s)	835
Eco57I	CTGAAG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	835
ErhI	CCWWGG	1 cut(s)	835
Esp3I	CGTCTC	2 cut(s)	309, 378
FaeI	CATG	5 cut(s)	224, 647, 706, 839, 896
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	5 cut(s)	220, 643, 702, 835, 892
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	4 cut(s)	16, 75, 106, 133
FokI	GGATG	2 cut(s)	177, 926
Fsp4HI	GCNGC	4 cut(s)	16, 75, 106, 133
FspBI	CTAG	3 cut(s)	204, 677, 888
GlaI	GCGC	2 cut(s)	78, 163
GluI	GCNGC	4 cut(s)	16, 75, 106, 133
HaeII	RGCGCY	1 cut(s)	165
HapII	CCGG	4 cut(s)	71, 165, 443, 899
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	2 cut(s)	79, 164
Hin1II	CATG	5 cut(s)	224, 647, 706, 839, 896
Hin6I	GCGC	2 cut(s)	77, 162
HinP1I	GCGC	2 cut(s)	77, 162
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	3 cut(s)	242, 422, 902
HpaII	CCGG	4 cut(s)	71, 165, 443, 899
HphI	GGTGA	3 cut(s)	84, 818, 860
Hpy166II	GTNNAC	2 cut(s)	391, 967
Hpy188I	TCNGA	3 cut(s)	427, 597, 673
Hpy188III	TCNNGA	3 cut(s)	139, 149, 233
Hpy8I	GTNNAC	2 cut(s)	391, 967
Hpy99I	CGWCG	2 cut(s)	308, 980
HpyAV	CCTTC	3 cut(s)	166, 455, 620
HpyCH4III	ACNGT	2 cut(s)	407, 745
HpyCH4IV	ACGT	4 cut(s)	259, 318, 387, 858
HpyCH4V	TGCA	7 cut(s)	4, 132, 214, 339, 576, 700, 706
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	3 cut(s)	65, 286, 672
HpySE526I	ACGT	4 cut(s)	259, 318, 387, 858
Hsp92II	CATG	5 cut(s)	224, 647, 706, 839, 896
HspAI	GCGC	2 cut(s)	77, 162
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	4 cut(s)	49, 141, 592, 715
LpnPI	CCDG	6 cut(s)	84, 124, 162, 178, 456, 912
Lsp1109I	GCAGC	4 cut(s)	27, 86, 92, 144
LweI	GCATC	6 cut(s)	144, 199, 272, 279, 348, 841
MaeI	CTAG	3 cut(s)	204, 677, 888
MaeII	ACGT	4 cut(s)	259, 318, 387, 858
MaeIII	GTNAC	2 cut(s)	299, 331
MalI	GATC	4 cut(s)	51, 143, 594, 717
MboI	GATC	4 cut(s)	49, 141, 592, 715
MboII	GAAGA	2 cut(s)	59, 776
MfeI	CAATTG	2 cut(s)	583, 753
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	9 cut(s)	481, 549, 583, 610, 711, 720, 753, 795, 1003
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	9 cut(s)	28, 204, 218, 284, 373, 562, 613, 804, 935
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	2 cut(s)	480, 993
MslI	CAYNNNNRTG	3 cut(s)	122, 405, 846
MspA1I	CMGCKG	1 cut(s)	105
MspI	CCGG	4 cut(s)	71, 165, 443, 899
MspR9I	CCNGG	1 cut(s)	71
MunI	CAATTG	2 cut(s)	583, 753
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	204
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	835
NdeII	GATC	4 cut(s)	49, 141, 592, 715
NgoMIV	GCCGGC	1 cut(s)	164
NheI	GCTAGC	1 cut(s)	676
NlaIII	CATG	5 cut(s)	224, 647, 706, 839, 896
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	331
NspI	RCATGY	1 cut(s)	706
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	242, 902
PinAI	ACCGGT	1 cut(s)	442
PkrI	GCNGC	4 cut(s)	17, 76, 107, 134
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	441
PvuII	CAGCTG	1 cut(s)	105
RsaI	GTAC	2 cut(s)	747, 922
RsaNI	GTAC	2 cut(s)	746, 921
RseI	CAYNNNNRTG	3 cut(s)	122, 405, 846
SaqAI	TTAA	2 cut(s)	480, 993
SatI	GCNGC	4 cut(s)	16, 75, 106, 133
Sau3AI	GATC	4 cut(s)	49, 141, 592, 715
ScaI	AGTACT	1 cut(s)	922
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	6 cut(s)	144, 199, 272, 279, 348, 841
SmiMI	CAYNNNNRTG	3 cut(s)	122, 405, 846
Sse9I	AATT	9 cut(s)	481, 549, 583, 610, 711, 720, 753, 795, 1003
SspI	AATATT	2 cut(s)	634, 691
SspMI	CTAG	3 cut(s)	204, 677, 888
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	835
TaaI	ACNGT	2 cut(s)	407, 745
TaiI	ACGT	4 cut(s)	262, 321, 390, 861
TaqI	TCGA	6 cut(s)	273, 280, 342, 453, 978, 1042
TasI	AATT	9 cut(s)	481, 549, 583, 610, 711, 720, 753, 795, 1003
TatI	WGTACW	1 cut(s)	920
TfiI	GAWTC	2 cut(s)	242, 902
Tru1I	TTAA	2 cut(s)	480, 993
Tru9I	TTAA	2 cut(s)	480, 993
TscAI	CASTG	2 cut(s)	410, 583
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	4 cut(s)	15, 74, 105, 132
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	4 cut(s)	389, 474, 654, 839
TspGWI	ACGGA	1 cut(s)	964
TspRI	CASTG	2 cut(s)	410, 583
XceI	RCATGY	1 cut(s)	706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	842
XspI	CTAG	3 cut(s)	204, 677, 888
ZrmI	AGTACT	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.