Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001043

Physical Location & Seq

Genomic Coordinates Forward (+)

29235107 .. 29236005

Gene Structure 899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCTCAGGTCGGGCGAAGAAGGGGAGGTTCTCGAATGGAGGGTCGTGACATCAACAATGACATGGCTGAAATCAAAAGGATGCTTCAGCAACTTGAGGTACGTATTGATCGCATCGAAGCCCAACGACAGAGTCGTAAGAGTTCCGACGGGGAGAGAGACATTACCACCTATTATCAACGTATTGATCGCATCGAAACTTTCTACCAAGATGGTGACGGTTCCGACGGGGAGATATGCGTTGGCCCAATTCATAATTGTGCTCCGCTGTGTGAGTTGAATGAAGAGGGACATAGTACTTTCAACTGTTCTAGTTGTAAGTCCACTATCTTTAATTTTCCATTTGTTGAGGACGTATTTTTAGAAAAAGAAAAAAATAATTTCATGAGTTTTAATATACCACCGAAGTATGACTGTTATAAAGGTTATGAAGTTTGTGATGGTGGTGTGGAGGACCAAAGGAAAAATGAATTTGTTCCTAGAAATTGTGATGATGAAGACGACAATAAAGCCGCAATCAAGTCAATATTGTGGAAAGATATTGAGCATAAATTTGTTGATTTTGTTGGAGTTAATGCATTCATTATGCATATTCCCAAAGAATTAGTTAATCTTGTCACTCAGATAAAAGATGGTGAGGAAAATTTTGGGATTGCGAAGTTAATGTCGGAGAGAAAATTTATGGGGTCAAGATTAATTATTTATTCCAAATATCTATTTGTTTGGAAAGGAAGGATTCAATTGCAAGTTAAAGATTTTGTCAGGATTTCCTCAATCAATGACTCGAATTCGAGGGCGAATTCTTTCCAACCAGGGGAGTCTGATGCTGGAGCATATGTGGCAATATCAAATGATGCATTTGATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

33.21

Weight (kDa)

5.16

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07634
prunus_persica	Prupe.1G102800_v2.0.a1 Prupe.8G086900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0246931
rosa_laevigata	RLG00000003129 RLG00000005865 RLG00000005867 RLG00000008042 RLG00000017998 RLG00000019187 RLG00000019483 RLG00000022446 RLG00000023139 RLG00000032380 RLG00000034989 RLG00000037076
rosa_multiflora	Rmu_co8397459.1_g000001 Rmu_sc0000195.1_g000037 Rmu_sc0000516.1_g000018 Rmu_sc0001091.1_g000004 Rmu_sc0001113.1_g000012 Rmu_sc0001673.1_g000033 Rmu_sc0001694.1_g000016 Rmu_sc0001793.1_g000051 Rmu_sc0002676.1_g000007 Rmu_sc0002986.1_g000020 Rmu_sc0004253.1_g000001 Rmu_sc0004478.1_g000012 Rmu_sc0004614.1_g000007 Rmu_sc0005387.1_g000002 Rmu_sc0006592.1_g000013 Rmu_sc0006967.1_g000011 Rmu_sc0011039.1_g000002 Rmu_sc0016880.1_g000004 Rmu_ssc0000182.1_g000020
rosa_roxburghii	Rroxscaffold_1G00024880 Rroxscaffold_1G00053230 Rroxscaffold_1G00068810 Rroxscaffold_1G00068820 Rroxscaffold_2G00094300 Rroxscaffold_2G00095320 Rroxscaffold_2G00095330 Rroxscaffold_2G00108180 Rroxscaffold_2G00130520 Rroxscaffold_2G00131280 Rroxscaffold_3G00229800 Rroxscaffold_4G00279060 Rroxscaffold_4G00312500 Rroxscaffold_4G00312510 Rroxscaffold_7G00215840
rosa_samantha	Rh1BG408300 Rh3AG269100 Rh3CG198400 Rh3CG303300 Rh5AG056400 Rh5DG052900 Rh5DG388100 Rh7BG462700 Rh7CG506000
rosa_wichuraiana	Rw1G013080 Rw2G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
AciI	CCGC	2 cut(s)	266, 513
AcsI	RAATTY	6 cut(s)	470, 551, 643, 677, 787, 799
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	2 cut(s)	102, 298
AfiI	CCNNNNNNNGG	1 cut(s)	814
AgsI	TTSAA	3 cut(s)	280, 304, 740
AjnI	CCWGG	1 cut(s)	811
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	2 cut(s)	9, 153
AoxI	GGCC	1 cut(s)	244
ApoI	RAATTY	6 cut(s)	470, 551, 643, 677, 787, 799
ArsI	GACNNNNNNTTYG	4 cut(s)	28, 60, 650, 682
AseI	ATTAAT	1 cut(s)	695
Asp700I	GAANNNNTTC	2 cut(s)	474, 803
AspS9I	GGNCC	2 cut(s)	245, 454
AsuHPI	GGTGA	2 cut(s)	227, 647
AvaII	GGWCC	1 cut(s)	454
BbsI	GAAGAC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	265
BccI	CCATC	3 cut(s)	206, 434, 626
BciT130I	CCWGG	1 cut(s)	813
BcoDI	GTCTC	2 cut(s)	9, 153
BfaI	CTAG	2 cut(s)	312, 480
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	813
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	2 cut(s)	245, 454
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	813
BmsI	GCATC	5 cut(s)	72, 123, 201, 814, 844
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	849
BpuEI	CTTGAG	1 cut(s)	116
BsaAI	YACGTR	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	812
BsaXI	ACNNNNNCTCC	2 cut(s)	822, 852
Bsc4I	CCNNNNNNNGG	1 cut(s)	814
BseBI	CCWGG	1 cut(s)	813
BseDI	CCNNGG	1 cut(s)	812
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	814
BseMII	CTCAG	2 cut(s)	20, 635
BshFI	GGCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	814
BsmAI	GTCTC	2 cut(s)	9, 153
BsmFI	GGGAC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	578
BsnI	GGCC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	109, 187
BspACI	CCGC	2 cut(s)	266, 513
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	2 cut(s)	19, 634
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	812
BssMI	GATC	2 cut(s)	109, 187
Bst2UI	CCWGG	1 cut(s)	813
Bst4CI	ACNGT	3 cut(s)	221, 308, 416
Bst6I	CTCTTC	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	6, 621
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	2 cut(s)	112, 190
BstMAI	GTCTC	2 cut(s)	9, 153
BstMBI	GATC	2 cut(s)	109, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	839
BstNI	CCWGG	1 cut(s)	813
BstSCI	CCNGG	1 cut(s)	811
BstSNI	TACGTA	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	87
CciI	TCATGA	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	245, 454
Csp6I	GTAC	2 cut(s)	101, 297
CviAII	CATG	2 cut(s)	64, 385
CviJI	RGCY	4 cut(s)	68, 122, 246, 512
CviKI_1	RGCY	4 cut(s)	68, 122, 246, 512
CviQI	GTAC	2 cut(s)	101, 297
DdeI	CTNAG	2 cut(s)	6, 621
DpnI	GATC	2 cut(s)	111, 189
DpnII	GATC	2 cut(s)	109, 187
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco105I	TACGTA	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	71
EcoRI	GAATTC	2 cut(s)	787, 799
EcoRII	CCWGG	1 cut(s)	811
EcoT22I	ATGCAT	3 cut(s)	580, 591, 859
FaeI	CATG	2 cut(s)	67, 388
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	2 cut(s)	63, 384
FauNDI	CATATG	1 cut(s)	835
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	2 cut(s)	312, 480
GluI	GCNGC	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	849
HaeIII	GGCC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	67, 388
HinfI	GANTC	4 cut(s)	133, 736, 782, 818
HphI	GGTGA	2 cut(s)	227, 647
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	5 cut(s)	148, 226, 624, 670, 823
Hpy188III	TCNNGA	5 cut(s)	33, 47, 385, 690, 763
Hpy8I	GTNNAC	1 cut(s)	324
Hpy99I	CGWCG	2 cut(s)	152, 230
HpyAV	CCTTC	2 cut(s)	15, 726
HpyCH4III	ACNGT	3 cut(s)	221, 308, 416
HpyCH4IV	ACGT	3 cut(s)	103, 181, 354
HpyCH4V	TGCA	4 cut(s)	578, 589, 745, 857
HpyF10VI	GCNNNNNNNGC	1 cut(s)	839
HpyF3I	CTNAG	2 cut(s)	6, 621
HpySE526I	ACGT	3 cut(s)	103, 181, 354
Hsp92II	CATG	2 cut(s)	67, 388
Kzo9I	GATC	2 cut(s)	109, 187
LmnI	GCTCC	2 cut(s)	268, 830
LpnPI	CCDG	4 cut(s)	748, 798, 813, 825
LweI	GCATC	5 cut(s)	72, 123, 201, 814, 844
MaeI	CTAG	2 cut(s)	312, 480
MaeII	ACGT	3 cut(s)	103, 181, 354
MaeIII	GTNAC	3 cut(s)	47, 215, 616
MalI	GATC	2 cut(s)	111, 189
MboI	GATC	2 cut(s)	109, 187
MboII	GAAGA	3 cut(s)	30, 296, 509
MfeI	CAATTG	1 cut(s)	740
MhlI	GDGCHC	1 cut(s)	265
MlyI	GAGTC	3 cut(s)	142, 776, 827
MmeI	TCCRAC	5 cut(s)	171, 249, 547, 648, 832
MnlI	CCTC	9 cut(s)	20, 34, 91, 280, 343, 445, 631, 781, 786
Mph1103I	ATGCAT	3 cut(s)	580, 591, 859
MroXI	GAANNNNTTC	2 cut(s)	474, 803
MseI	TTAA	8 cut(s)	333, 393, 573, 609, 662, 695, 750, 868
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	268
MspR9I	CCNGG	1 cut(s)	813
MunI	CAATTG	1 cut(s)	740
Mva1269I	GAATGC	1 cut(s)	578
MvaI	CCWGG	1 cut(s)	813
MwoI	GCNNNNNNNGC	1 cut(s)	839
NdeI	CATATG	1 cut(s)	835
NdeII	GATC	2 cut(s)	109, 187
NlaIII	CATG	2 cut(s)	67, 388
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	3 cut(s)	47, 215, 616
NsiI	ATGCAT	3 cut(s)	580, 591, 859
PagI	TCATGA	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	133
PctI	GAATGC	1 cut(s)	578
PdmI	GAANNNNTTC	2 cut(s)	474, 803
PfeI	GAWTC	1 cut(s)	736
PflFI	GACNNNGTC	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	514
PleI	GAGTC	3 cut(s)	141, 776, 826
PpsI	GAGTC	3 cut(s)	141, 776, 826
Ppu21I	YACGTR	1 cut(s)	104
PshBI	ATTAAT	1 cut(s)	695
PsiI	TTATAA	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	811
PspGI	CCWGG	1 cut(s)	811
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	245, 454
PsyI	GACNNNGTC	1 cut(s)	132
RsaI	GTAC	2 cut(s)	102, 298
RsaNI	GTAC	2 cut(s)	101, 297
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	8 cut(s)	333, 393, 573, 609, 662, 695, 750, 868
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	2 cut(s)	109, 187
Sau96I	GGNCC	2 cut(s)	245, 454
ScaI	AGTACT	1 cut(s)	298
SchI	GAGTC	3 cut(s)	142, 776, 827
ScrFI	CCNGG	1 cut(s)	813
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	8 cut(s)	12, 31, 102, 106, 173, 184, 357, 427
SfaNI	GCATC	5 cut(s)	72, 123, 201, 814, 844
SinI	GGWCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SnaBI	TACGTA	1 cut(s)	104
SsiI	CCGC	2 cut(s)	266, 513
SspI	AATATT	1 cut(s)	528
SspMI	CTAG	2 cut(s)	312, 480
StyD4I	CCNGG	1 cut(s)	811
TaaI	ACNGT	3 cut(s)	221, 308, 416
TaiI	ACGT	3 cut(s)	106, 184, 357
TaqI	TCGA	5 cut(s)	34, 117, 195, 785, 791
TatI	WGTACW	1 cut(s)	296
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	1 cut(s)	736
Tru1I	TTAA	8 cut(s)	333, 393, 573, 609, 662, 695, 750, 868
Tru9I	TTAA	8 cut(s)	333, 393, 573, 609, 662, 695, 750, 868
TseFI	GTSAC	3 cut(s)	47, 215, 616
Tsp45I	GTSAC	3 cut(s)	47, 215, 616
TspDTI	ATGAA	7 cut(s)	242, 297, 373, 444, 483, 510, 571
Tth111I	GACNNNGTC	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	454
VspI	ATTAAT	1 cut(s)	695
XapI	RAATTY	6 cut(s)	470, 551, 643, 677, 787, 799
XmnI	GAANNNNTTC	2 cut(s)	474, 803
XspI	CTAG	2 cut(s)	312, 480
ZrmI	AGTACT	1 cut(s)	298
Zsp2I	ATGCAT	3 cut(s)	580, 591, 859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.