RLG00000019483

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001043
Physical Location & Seq
Forward (+)
52593823 .. 52594414
592 bp
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UTR
Exon/CDS
Intron
RLM00000019483

Sequence Viewer

Length: 480 bp
ATGGTAGCGGTGCATGTGGTTTCAGGGTTGGAGGCGGTGGTTAGTTTTGGCGCAGCAGCAGTGGCTCAGGCTTTTGGAGAGGGTGTTTTGTCGCTGCTACCTCCAGTTCAGGCAGCGGTTGGCAGGCTCCGCAAGGGGGGGATGGTGTCTCCACTGGCTTCCTTGGTGAAGATGCTCGGCTTCTTTGCGGTGGACTTGGAAGCCATTCTAGGCTGGGAATCACAGGTGTTGGAGCCTCTTAAGACGGATGTCAGAAGGAGATCGTGGCTGCCCGCGGCATTTAGGGTATCCGGGATGCAGGAAGGCCCAACTGAGTTGGTACAGGTTGGAAAGAGATCTAAACTTATTTTGATGCATGAGCCCCAACCTTTGGATGTCAACGAGGGTTTCGACCTTCCTAACAATAATGGGTTATCAACATTTCTCCAACCAAGAAAAGAGTCGGCCAAAGGAAAGCAAGAACAAGACAAAGGGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.03

Weight (kDa)

8.05

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 370
AccII CGCG 1 cut(s) 275
AciI CCGC 7 cut(s) 8, 35, 116, 130, 188, 273, 275
AcoI YGGCCR 1 cut(s) 444
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 2 cut(s) 136, 370
AflII CTTAAG 1 cut(s) 239
AhdI GACNNNNNGTC 1 cut(s) 472
Alw26I GTCTC 1 cut(s) 153
AoxI GGCC 2 cut(s) 304, 444
ApeKI GCWGC 5 cut(s) 53, 56, 94, 113, 268
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 305, 474
AsuC2I CCSGG 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 178
AvaII GGWCC 1 cut(s) 474
BanII GRGCYC 1 cut(s) 363
BbvI GCAGC 5 cut(s) 65, 68, 81, 125, 255
BccI CCATC 1 cut(s) 136
BciVI GTATCC 1 cut(s) 298
BcnI CCSGG 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 209
BfrI CTTAAG 1 cut(s) 239
BfuI GTATCC 1 cut(s) 298
BglII AGATCT 1 cut(s) 335
BisI GCNGC 6 cut(s) 54, 57, 95, 114, 269, 276
BlsI GCNGC 6 cut(s) 55, 58, 96, 115, 270, 277
Bme1390I CCNGG 1 cut(s) 292
Bme18I GGWCC 1 cut(s) 474
BmeRI GACNNNNNGTC 1 cut(s) 472
BmgT120I GGNCC 2 cut(s) 305, 474
BmiI GGNNCC 3 cut(s) 128, 234, 475
BmrFI CCNGG 1 cut(s) 292
BmsI GCATC 3 cut(s) 162, 285, 342
BoxI GACNNNNGTC 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 292
BsaJI CCNNGG 2 cut(s) 162, 273
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 370
Bse1I ACTGG 2 cut(s) 104, 159
BseDI CCNNGG 2 cut(s) 162, 273
BseGI GGATG 4 cut(s) 147, 253, 300, 379
BseLI CCNNNNNNNGG 2 cut(s) 136, 370
BseMII CTCAG 2 cut(s) 80, 303
BseNI ACTGG 2 cut(s) 104, 159
BseXI GCAGC 5 cut(s) 65, 68, 81, 125, 255
BseYI CCCAGC 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 275
BshFI GGCC 2 cut(s) 306, 446
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 136, 370
BsmAI GTCTC 1 cut(s) 153
BsnI GGCC 2 cut(s) 306, 446
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 260, 335
BspACI CCGC 7 cut(s) 8, 35, 116, 130, 188, 273, 275
BspANI GGCC 2 cut(s) 306, 446
BspCNI CTCAG 2 cut(s) 79, 304
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 3 cut(s) 128, 234, 475
BspTI CTTAAG 1 cut(s) 239
BsrI ACTGG 2 cut(s) 104, 159
BssECI CCNNGG 2 cut(s) 162, 273
BssMI GATC 2 cut(s) 260, 335
BssT1I CCWWGG 1 cut(s) 162
BstAFI CTTAAG 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 125, 273
BstDEI CTNAG 2 cut(s) 66, 312
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 4 cut(s) 147, 253, 300, 379
BstFNI CGCG 1 cut(s) 275
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 2 cut(s) 263, 338
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 2 cut(s) 260, 335
BstMWI GCNNNNNNNGC 2 cut(s) 62, 129
BstNSI RCATGY 1 cut(s) 17
BstPAI GACNNNNGTC 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 290
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 5 cut(s) 65, 68, 81, 125, 255
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 2 cut(s) 306, 446
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 4 cut(s) 147, 253, 300, 379
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 152
Cac8I GCNNGC 2 cut(s) 125, 273
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 305, 474
Cfr42I CCGCGG 1 cut(s) 276
Csp6I GTAC 1 cut(s) 320
CviAII CATG 2 cut(s) 14, 356
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 2 cut(s) 66, 312
DpnI GATC 2 cut(s) 262, 337
DpnII GATC 2 cut(s) 260, 335
DriI GACNNNNNGTC 1 cut(s) 472
EaeI YGGCCR 1 cut(s) 444
Eam1105I GACNNNNNGTC 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 474
EcoO109I RGGNCCY 1 cut(s) 474
EcoT14I CCWWGG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 357
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 17, 359
FaiI YATR 2 cut(s) 15, 357
FatI CATG 2 cut(s) 13, 355
FauI CCCGC 1 cut(s) 280
Fnu4HI GCNGC 6 cut(s) 54, 57, 95, 114, 269, 276
FokI GGATG 4 cut(s) 154, 260, 307, 386
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 6 cut(s) 54, 57, 95, 114, 269, 276
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 52
GluI GCNGC 6 cut(s) 54, 57, 95, 114, 269, 276
GsaI CCCAGC 1 cut(s) 217
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 2 cut(s) 306, 446
HapII CCGG 1 cut(s) 291
HhaI GCGC 1 cut(s) 53
Hin1II CATG 2 cut(s) 17, 359
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 2 cut(s) 218, 440
HpaII CCGG 1 cut(s) 291
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 2 cut(s) 193, 379
Hpy188I TCNGA 1 cut(s) 254
Hpy8I GTNNAC 2 cut(s) 193, 379
HpyAV CCTTC 3 cut(s) 249, 296, 404
HpyCH4V TGCA 3 cut(s) 13, 298, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 129
HpyF3I CTNAG 2 cut(s) 66, 312
Hsp92II CATG 2 cut(s) 17, 359
HspAI GCGC 1 cut(s) 51
KspI CCGCGG 1 cut(s) 276
Kzo9I GATC 2 cut(s) 260, 335
LmnI GCTCC 2 cut(s) 132, 232
Lsp1109I GCAGC 5 cut(s) 65, 68, 81, 125, 255
LweI GCATC 3 cut(s) 162, 285, 342
MaeI CTAG 1 cut(s) 209
MalI GATC 2 cut(s) 262, 337
MboI GATC 2 cut(s) 260, 335
MboII GAAGA 1 cut(s) 181
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 363
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 4 cut(s) 9, 210, 307, 451
MnlI CCTC 5 cut(s) 25, 73, 111, 246, 376
Mph1103I ATGCAT 1 cut(s) 357
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 240
MspA1I CMGCKG 2 cut(s) 116, 275
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 1 cut(s) 292
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 62, 129
NciI CCSGG 1 cut(s) 292
NdeII GATC 2 cut(s) 260, 335
NlaIII CATG 2 cut(s) 17, 359
NlaIV GGNNCC 3 cut(s) 128, 234, 475
NmeAIII GCCGAG 1 cut(s) 156
NsiI ATGCAT 1 cut(s) 357
NspI RCATGY 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 218
PflMI CCANNNNNTGG 1 cut(s) 370
PfoI TCCNGGA 1 cut(s) 290
PkrI GCNGC 6 cut(s) 55, 58, 96, 115, 270, 277
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PpuMI RGGWCCY 1 cut(s) 474
PshAI GACNNNNGTC 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 474
PspFI CCCAGC 1 cut(s) 213
PspN4I GGNNCC 3 cut(s) 128, 234, 475
PspPI GGNCC 2 cut(s) 305, 474
PspPPI RGGWCCY 1 cut(s) 474
PsuI RGATCY 1 cut(s) 335
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
SacII CCGCGG 1 cut(s) 276
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 6 cut(s) 54, 57, 95, 114, 269, 276
Sau3AI GATC 2 cut(s) 260, 335
Sau96I GGNCC 2 cut(s) 305, 474
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 292
SduI GDGCHC 1 cut(s) 363
SetI ASST 5 cut(s) 103, 228, 327, 370, 396
SfaNI GCATC 3 cut(s) 162, 285, 342
Sfr303I CCGCGG 1 cut(s) 276
SgrBI CCGCGG 1 cut(s) 276
SinI GGWCC 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SsiI CCGC 7 cut(s) 8, 35, 116, 130, 188, 273, 275
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 290
StyI CCWWGG 1 cut(s) 162
TaqI TCGA 1 cut(s) 390
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 2 cut(s) 66, 159
TseI GCWGC 5 cut(s) 53, 56, 94, 113, 268
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 2 cut(s) 66, 159
Van91I CCANNNNNTGG 1 cut(s) 370
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 474
XceI RCATGY 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 1 cut(s) 209
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.