RLG00000023139

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001043
Physical Location & Seq
Reverse (-)
18738932 .. 18741044
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023139

Sequence Viewer

Length: 318 bp
ATGTTGCTAAAGGCGCCTAGGGCTTTTGCTGCACCTAAGGTTTCAACATGGCCTCTAGGAGAGCAGATGTCGAAAACACAAGAGGTGACCAAAAAGGCTCTGGAGTGGGTGAAGGCGCCGGCGGTCACGACACCATTGGAGGTGGATGGCAACTTTGACCTACCCAATGCCAATGGAGTTATTCATATTTCTCCTACTAAGAAGAGGGGTCGTTCTAAGAGCAATAAGAACAAGTATACAACTAAGGGACCTAAGCCTTGGAGGACTAGGATTCCTATGCCTGGTCAGGAAGTTGAACCTGTAGATGAATTAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.63

Weight (kDa)

9.99

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 13, 115
AccI GTMKAC 1 cut(s) 236
AciI CCGC 1 cut(s) 122
AcyI GRCGYC 2 cut(s) 14, 116
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 45, 296
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 29
AspA2I CCTAGG 1 cut(s) 17
AspLEI GCGC 2 cut(s) 16, 118
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 2 cut(s) 97, 121
AvaII GGWCC 1 cut(s) 248
AvrII CCTAGG 1 cut(s) 17
AxyI CCTNAGG 1 cut(s) 36
BanI GGYRCC 2 cut(s) 13, 115
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 282
BfaI CTAG 3 cut(s) 18, 56, 267
BfmI CTRYAG 1 cut(s) 300
BfoI RGCGCY 2 cut(s) 17, 119
BisI GCNGC 1 cut(s) 30
BlnI CCTAGG 1 cut(s) 17
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 3 cut(s) 15, 117, 249
BmrFI CCNGG 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 252
BsaHI GRCGYC 2 cut(s) 14, 116
BsaJI CCNNGG 2 cut(s) 17, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse118I RCCGGY 1 cut(s) 118
Bse21I CCTNAGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 17, 257
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 15
BshFI GGCC 1 cut(s) 52
BshNI GGYRCC 2 cut(s) 13, 115
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 1 cut(s) 52
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 52
BspLI GGNNCC 3 cut(s) 15, 117, 249
BspT107I GGYRCC 2 cut(s) 13, 115
BsrFI RCCGGY 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 17, 257
BssNAI GTATAC 1 cut(s) 237
BssNI GRCGYC 2 cut(s) 14, 116
BssT1I CCWWGG 2 cut(s) 17, 257
Bst1107I GTATAC 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 197
BstACI GRCGYC 2 cut(s) 14, 116
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 5 cut(s) 36, 198, 216, 243, 252
BstEII GGTNACC 1 cut(s) 85
BstF5I GGATG 1 cut(s) 151
BstH2I RGCGCY 2 cut(s) 17, 119
BstHHI GCGC 2 cut(s) 16, 118
BstMWI GCNNNNNNNGC 3 cut(s) 13, 20, 29
BstNI CCWGG 1 cut(s) 282
BstPI GGTNACC 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 16
BstZ17I GTATAC 1 cut(s) 237
Bsu36I CCTNAGG 1 cut(s) 36
BsuRI GGCC 1 cut(s) 52
BtsCI GGATG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 2 cut(s) 16, 118
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 248
CviAII CATG 1 cut(s) 48
CviJI RGCY 5 cut(s) 23, 52, 98, 256, 314
CviKI_1 RGCY 5 cut(s) 23, 52, 98, 256, 314
DdeI CTNAG 5 cut(s) 36, 198, 216, 243, 252
DinI GGCGCC 2 cut(s) 15, 117
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco130I CCWWGG 2 cut(s) 17, 257
Eco47I GGWCC 1 cut(s) 248
Eco81I CCTNAGG 1 cut(s) 36
Eco91I GGTNACC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 248
EcoO65I GGTNACC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 17, 257
EgeI GGCGCC 2 cut(s) 15, 117
EheI GGCGCC 2 cut(s) 15, 117
ErhI CCWWGG 2 cut(s) 17, 257
FaeI CATG 1 cut(s) 51
FaiI YATR 4 cut(s) 49, 186, 237, 278
FaqI GGGAC 1 cut(s) 261
FatI CATG 1 cut(s) 47
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 3 cut(s) 18, 56, 267
GlaI GCGC 2 cut(s) 15, 117
GluI GCNGC 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 122
HaeII RGCGCY 2 cut(s) 17, 119
HaeIII GGCC 1 cut(s) 52
HapII CCGG 1 cut(s) 119
HhaI GCGC 2 cut(s) 16, 118
Hin1I GRCGYC 2 cut(s) 14, 116
Hin1II CATG 1 cut(s) 51
Hin6I GCGC 2 cut(s) 14, 116
HinP1I GCGC 2 cut(s) 14, 116
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 119
HphI GGTGA 2 cut(s) 97, 121
Hpy166II GTNNAC 1 cut(s) 237
Hpy188III TCNNGA 3 cut(s) 101, 127, 287
Hpy8I GTNNAC 1 cut(s) 237
HpyAV CCTTC 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 20, 29
HpyF3I CTNAG 5 cut(s) 36, 198, 216, 243, 252
Hsp92I GRCGYC 2 cut(s) 14, 116
Hsp92II CATG 1 cut(s) 51
HspAI GCGC 2 cut(s) 14, 116
KasI GGCGCC 2 cut(s) 13, 115
KroI GCCGGC 1 cut(s) 118
KroNI GCCGGC 1 cut(s) 120
LpnPI CCDG 6 cut(s) 86, 132, 267, 272, 294, 312
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 3 cut(s) 18, 56, 267
MaeIII GTNAC 2 cut(s) 85, 124
MboII GAAGA 1 cut(s) 214
MluCI AATT 1 cut(s) 308
Mly113I GGCGCC 2 cut(s) 14, 116
MnlI CCTC 5 cut(s) 63, 76, 133, 198, 255
MreI CGCCGGCG 1 cut(s) 118
MroNI GCCGGC 1 cut(s) 118
MseI TTAA 1 cut(s) 316
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 13, 20, 29
NaeI GCCGGC 1 cut(s) 120
NarI GGCGCC 2 cut(s) 14, 116
NgoMIV GCCGGC 1 cut(s) 118
NlaIII CATG 1 cut(s) 51
NlaIV GGNNCC 3 cut(s) 15, 117, 249
NmuCI GTSAC 2 cut(s) 85, 124
PdiI GCCGGC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 1 cut(s) 31
PluTI GGCGCC 2 cut(s) 17, 119
PpuMI RGGWCCY 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 280
PspEI GGTNACC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 3 cut(s) 15, 117, 249
PspPI GGNCC 1 cut(s) 248
PspPPI RGGWCCY 1 cut(s) 248
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 282
SetI ASST 8 cut(s) 37, 42, 87, 144, 162, 253, 301, 316
SfcI CTRYAG 1 cut(s) 300
SfoI GGCGCC 2 cut(s) 15, 117
SgrAI CRCCGGYG 1 cut(s) 118
SinI GGWCC 1 cut(s) 248
Sse9I AATT 1 cut(s) 308
SsiI CCGC 1 cut(s) 122
SspDI GGCGCC 2 cut(s) 13, 115
SspMI CTAG 3 cut(s) 18, 56, 267
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 2 cut(s) 17, 257
TaqI TCGA 1 cut(s) 71
TasI AATT 1 cut(s) 308
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TseFI GTSAC 2 cut(s) 85, 124
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 2 cut(s) 85, 124
TspDTI ATGAA 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmaJI CCTAGG 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 236
XspI CTAG 3 cut(s) 18, 56, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.