Rroxscaffold_7G00215840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001043
Physical Location & Seq
Reverse (-)
66392995 .. 66394853
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00215840.1

Sequence Viewer

Length: 303 bp
ATGGAGGGTCGTGGCATCAACAACGACATGGCTGAAATTAAAAGGATGTTTCAGCAACTTGCGGTACGTGTCAATCACATCGAAGCTCGACAACGAGGTTGTAGGAGTTCCGATGGGGAGAGAAACGCTCCATACTCCAGTGGAATATGGCCAAAGCTCAAAGATAGATTGCTCCCCGGCCTTGAGCAAGCGGGGCTCATCCCTTCGATTCAATCACTACCATGTTATCCAAGAGTGTTACCCGAGGTGTACATTGTGACCCTTCCCGAAGATGACTCCAATATCCCTTCACATCGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.28

Weight (kDa)

7.82

Isoelectric Point (pI)

63.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 62, 191
AcoI YGGCCR 1 cut(s) 149
AfaI GTAC 2 cut(s) 66, 251
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 2 cut(s) 86, 157
AluI AGCT 2 cut(s) 86, 157
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 2 cut(s) 149, 178
AsuC2I CCSGG 1 cut(s) 177
AvaI CYCGRG 1 cut(s) 242
BalI TGGCCA 1 cut(s) 151
BanII GRGCYC 1 cut(s) 198
BccI CCATC 1 cut(s) 107
BcnI CCSGG 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 24
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BpmI CTGGAG 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 175, 243
Bse1I ACTGG 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 175, 243
BseGI GGATG 2 cut(s) 51, 198
BseNI ACTGG 1 cut(s) 138
BshFI GGCC 2 cut(s) 151, 180
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 1 cut(s) 177
BsnI GGCC 2 cut(s) 151, 180
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 198
Bsp1407I TGTACA 1 cut(s) 249
BspACI CCGC 2 cut(s) 62, 191
BspANI GGCC 2 cut(s) 151, 180
BsrGI TGTACA 1 cut(s) 249
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 2 cut(s) 175, 243
BstAUI TGTACA 1 cut(s) 249
BstBAI YACGTR 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 189
BstF5I GGATG 2 cut(s) 51, 198
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 175
BsuRI GGCC 2 cut(s) 151, 180
BtsCI GGATG 2 cut(s) 51, 198
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 189
Csp6I GTAC 2 cut(s) 65, 250
CviAII CATG 2 cut(s) 28, 222
CviJI RGCY 6 cut(s) 32, 86, 151, 157, 180, 196
CviKI_1 RGCY 6 cut(s) 32, 86, 151, 157, 180, 196
CviQI GTAC 2 cut(s) 65, 250
EaeI YGGCCR 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 2 cut(s) 31, 225
FaiI YATR 5 cut(s) 29, 133, 148, 223, 301
FatI CATG 2 cut(s) 27, 221
FauI CCCGC 1 cut(s) 184
FokI GGATG 2 cut(s) 58, 185
FriOI GRGCYC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 2 cut(s) 151, 180
HapII CCGG 1 cut(s) 177
Hin1II CATG 2 cut(s) 31, 225
HinfI GANTC 2 cut(s) 208, 275
HpaII CCGG 1 cut(s) 177
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 3 cut(s) 213, 272, 297
HpyCH4IV ACGT 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 2 cut(s) 31, 225
LmnI GCTCC 2 cut(s) 133, 177
LpnPI CCDG 2 cut(s) 151, 190
LweI GCATC 1 cut(s) 24
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 2 cut(s) 237, 256
MboII GAAGA 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 198
MlsI TGGCCA 1 cut(s) 151
MluCI AATT 1 cut(s) 36
MluNI TGGCCA 1 cut(s) 151
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 2 cut(s) 89, 238
Mox20I TGGCCA 1 cut(s) 151
MscI TGGCCA 1 cut(s) 151
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 220
Msp20I TGGCCA 1 cut(s) 151
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 177
NlaIII CATG 2 cut(s) 31, 225
NmuCI GTSAC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 208
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Ppu21I YACGTR 1 cut(s) 68
RsaI GTAC 2 cut(s) 66, 251
RsaNI GTAC 2 cut(s) 65, 250
RseI CAYNNNNRTG 1 cut(s) 220
SaqAI TTAA 1 cut(s) 39
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 1 cut(s) 198
SetI ASST 5 cut(s) 70, 88, 100, 159, 249
SfaNI GCATC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 36
SsiI CCGC 2 cut(s) 62, 191
StyD4I CCNGG 1 cut(s) 175
TaiI ACGT 1 cut(s) 70
TaqI TCGA 3 cut(s) 81, 88, 206
TaqII GACCGA 1 cut(s) 285
TasI AATT 1 cut(s) 36
TatI WGTACW 1 cut(s) 249
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspRI CASTG 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.