Rroxscaffold_2G00095320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001043
Physical Location & Seq
Forward (+)
16698019 .. 16702474
4456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095320.1

Sequence Viewer

Length: 429 bp
ATGATAAGGCGCCCAGTCAAAAACAAGGGAGAGACTTTGTTCTATACCCATTGGATTATCCACTCCCAGATTACAATACTGTGGGATTTGGGTCTTTTACTGTTGGCTATTCAAGCTTTGGCAAGAGCTTGGTGGATTCCATGTCTCGGGTCGGGCGAAGAAGGGGAGGTTTTCGAATGGAGGATCGTGACATCAACAATGACATGGCAGAAATCAAAAGGATGCTTCAAAGAACTTGCGATACGTATTGATCGCATCGAAGCTCGACGTCGGCGTCGTAAGAGTTCCGACAGGGAGAGAAACATTACCACCTATCATCAACGTGTTGATCGCATCAAAATTTTCTACCAAGATGGTGATGGTTCCGACGGGGAGATATGCGTTGGCCCAATTCATAATTGTGCTCCGCCGTGTGAGTCAAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.6

Weight (kDa)

8.91

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 273
AatII GACGTC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 9
AciI CCGC 1 cut(s) 407
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 339
AcyI GRCGYC 3 cut(s) 10, 268, 274
AfiI CCNNNNNNNGG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 2 cut(s) 113, 229
AluBI AGCT 3 cut(s) 116, 128, 263
AluI AGCT 3 cut(s) 116, 128, 263
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 2 cut(s) 26, 149
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 1 cut(s) 385
ApoI RAATTY 1 cut(s) 339
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 368
AsuII TTCGAA 1 cut(s) 174
AvaI CYCGRG 1 cut(s) 146
BanI GGYRCC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 406
BccI CCATC 2 cut(s) 347, 353
BceAI ACGGC 1 cut(s) 394
BcoDI GTCTC 2 cut(s) 26, 149
BfoI RGCGCY 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 2 cut(s) 11, 364
BmrI ACTGGG 1 cut(s) 8
BmsI GCATC 3 cut(s) 212, 264, 342
BmuI ACTGGG 1 cut(s) 8
Bpu14I TTCGAA 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 245
BsaHI GRCGYC 3 cut(s) 10, 268, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 14
BshFI GGCC 1 cut(s) 387
BshNI GGYRCC 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 406
BsiHKCI CYCGRG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 26, 149
BsnI GGCC 1 cut(s) 387
BsoBI CYCGRG 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 3 cut(s) 183, 250, 328
BspACI CCGC 1 cut(s) 407
BspANI GGCC 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 11, 364
BspPI GGATC 1 cut(s) 191
BspT104I TTCGAA 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 14
BssMI GATC 3 cut(s) 183, 250, 328
BssNI GRCGYC 3 cut(s) 10, 268, 274
Bst4CI ACNGT 2 cut(s) 81, 102
BstACI GRCGYC 3 cut(s) 10, 268, 274
BstBAI YACGTR 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 174
BstF5I GGATG 1 cut(s) 227
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 3 cut(s) 186, 253, 331
BstMAI GTCTC 2 cut(s) 26, 149
BstMBI GATC 3 cut(s) 183, 250, 328
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSNI TACGTA 1 cut(s) 245
BsuRI GGCC 1 cut(s) 387
BtsCI GGATG 1 cut(s) 227
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 386
CseI GACGC 1 cut(s) 263
CviAII CATG 2 cut(s) 141, 204
CviJI RGCY 5 cut(s) 107, 116, 128, 263, 387
CviKI_1 RGCY 5 cut(s) 107, 116, 128, 263, 387
DinI GGCGCC 1 cut(s) 11
DpnI GATC 3 cut(s) 185, 252, 330
DpnII GATC 3 cut(s) 183, 250, 328
DrdI GACNNNNNNGTC 1 cut(s) 273
DseDI GACNNNNNNGTC 1 cut(s) 273
EciI GGCGGA 1 cut(s) 396
Eco105I TACGTA 1 cut(s) 245
Eco88I CYCGRG 1 cut(s) 146
EgeI GGCGCC 1 cut(s) 11
EheI GGCGCC 1 cut(s) 11
FaeI CATG 2 cut(s) 144, 207
FaiI YATR 5 cut(s) 45, 142, 205, 379, 396
FatI CATG 2 cut(s) 140, 203
FokI GGATG 1 cut(s) 234
GlaI GCGC 1 cut(s) 11
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 1 cut(s) 387
HgaI GACGC 1 cut(s) 263
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 3 cut(s) 10, 268, 274
Hin1II CATG 2 cut(s) 144, 207
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 2 cut(s) 136, 416
HphI GGTGA 1 cut(s) 368
Hpy188I TCNGA 2 cut(s) 289, 367
Hpy188III TCNNGA 1 cut(s) 187
Hpy99I CGWCG 4 cut(s) 270, 273, 279, 371
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 2 cut(s) 81, 102
HpyCH4IV ACGT 3 cut(s) 244, 268, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpySE526I ACGT 3 cut(s) 244, 268, 322
Hsp92I GRCGYC 3 cut(s) 10, 268, 274
Hsp92II CATG 2 cut(s) 144, 207
HspAI GCGC 1 cut(s) 10
KasI GGCGCC 1 cut(s) 9
Kzo9I GATC 3 cut(s) 183, 250, 328
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 3 cut(s) 27, 80, 277
LweI GCATC 3 cut(s) 212, 264, 342
MaeII ACGT 3 cut(s) 244, 268, 322
MaeIII GTNAC 1 cut(s) 187
MalI GATC 3 cut(s) 185, 252, 330
MboI GATC 3 cut(s) 183, 250, 328
MboII GAAGA 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 3 cut(s) 339, 390, 397
Mly113I GGCGCC 1 cut(s) 10
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 2 cut(s) 312, 390
MnlI CCTC 2 cut(s) 160, 174
MslI CAYNNNNRTG 2 cut(s) 321, 399
MwoI GCNNNNNNNGC 1 cut(s) 113
NarI GGCGCC 1 cut(s) 10
NdeII GATC 3 cut(s) 183, 250, 328
NlaIII CATG 2 cut(s) 144, 207
NlaIV GGNNCC 2 cut(s) 11, 364
NmuCI GTSAC 1 cut(s) 187
NspV TTCGAA 1 cut(s) 174
PcsI WCGNNNNNNNCGW 3 cut(s) 153, 271, 274
PfeI GAWTC 1 cut(s) 136
PleI GAGTC 1 cut(s) 424
PluTI GGCGCC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 245
PspN4I GGNNCC 2 cut(s) 11, 364
PspPI GGNCC 1 cut(s) 386
PsrI GAACNNNNNNTAC 2 cut(s) 225, 257
RseI CAYNNNNRTG 2 cut(s) 321, 399
Sau3AI GATC 3 cut(s) 183, 250, 328
Sau96I GGNCC 1 cut(s) 386
SchI GAGTC 1 cut(s) 425
SduI GDGCHC 1 cut(s) 406
SetI ASST 8 cut(s) 118, 130, 171, 247, 265, 271, 314, 325
SfaNI GCATC 3 cut(s) 212, 264, 342
SfoI GGCGCC 1 cut(s) 11
SfuI TTCGAA 1 cut(s) 174
SmiMI CAYNNNNRTG 2 cut(s) 321, 399
SnaBI TACGTA 1 cut(s) 245
Sse9I AATT 3 cut(s) 339, 390, 397
SsiI CCGC 1 cut(s) 407
SspDI GGCGCC 1 cut(s) 9
TaaI ACNGT 2 cut(s) 81, 102
TaiI ACGT 3 cut(s) 247, 271, 325
TaqI TCGA 3 cut(s) 174, 258, 265
TasI AATT 3 cut(s) 339, 390, 397
TfiI GAWTC 1 cut(s) 136
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 383
XapI RAATTY 1 cut(s) 339
XcmI CCANNNNNNNNNTGG 1 cut(s) 356
ZraI GACGTC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.